Wall clock time and date at job start Tue Mar 31 2020 05:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46879 * 2 1 4 4 C 1.52996 * 109.47462 * 119.99870 * 2 1 3 5 5 C 1.50704 * 109.47436 * 294.68663 * 4 2 1 6 6 O 1.21278 * 119.99715 * 355.01316 * 5 4 2 7 7 N 1.34774 * 119.99985 * 175.01768 * 5 4 2 8 8 C 1.47151 * 120.98553 * 359.71389 * 7 5 4 9 9 C 1.53709 * 108.16229 * 129.43091 * 8 7 5 10 10 O 1.42971 * 109.14682 * 52.54209 * 9 8 7 11 11 C 1.42962 * 114.16338 * 297.29169 * 10 9 8 12 12 C 1.47151 * 120.98043 * 180.02562 * 7 5 4 13 13 N 1.46900 * 109.47459 * 240.00414 * 2 1 3 14 14 C 1.47473 * 111.00067 * 163.75551 * 13 2 1 15 15 C 1.53519 * 87.93166 * 221.29519 * 14 13 2 16 16 C 1.50697 * 114.17033 * 139.67291 * 15 14 13 17 17 H 1.07998 * 119.99992 * 266.16257 * 16 15 14 18 18 C 1.37876 * 120.00204 * 86.15923 * 16 15 14 19 19 N 1.31519 * 120.00125 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00246 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46775 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47156 * 119.99916 * 20 18 16 23 23 H 1.48497 * 109.47334 * 240.00563 * 20 18 16 24 24 C 1.47485 * 110.99748 * 67.78197 * 13 2 1 25 25 H 1.08998 * 109.47015 * 299.99427 * 1 2 3 26 26 H 1.08992 * 109.47136 * 60.00078 * 1 2 3 27 27 H 1.09003 * 109.46879 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46842 * 54.68706 * 4 2 1 29 29 H 1.08996 * 109.47541 * 174.68137 * 4 2 1 30 30 H 1.08993 * 109.68587 * 249.21763 * 8 7 5 31 31 H 1.09004 * 109.67584 * 9.77080 * 8 7 5 32 32 H 1.09001 * 109.66030 * 292.57589 * 9 8 7 33 33 H 1.09004 * 109.48731 * 172.39811 * 9 8 7 34 34 H 1.09006 * 109.51068 * 302.65192 * 11 10 9 35 35 H 1.09002 * 109.55334 * 182.52915 * 11 10 9 36 36 H 1.08999 * 109.68178 * 350.23554 * 12 7 5 37 37 H 1.08999 * 109.68320 * 110.78728 * 12 7 5 38 38 H 1.08995 * 113.48149 * 336.05813 * 14 13 2 39 39 H 1.08997 * 113.47882 * 106.53351 * 14 13 2 40 40 H 1.08997 * 114.17235 * 272.37736 * 15 14 13 41 41 H 0.97000 * 120.00234 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.47476 * 253.47212 * 24 13 2 43 43 H 1.08991 * 113.47939 * 23.88388 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6481 0.0611 2.4762 6 8 1.1024 1.1379 2.3601 7 7 1.9041 -0.4359 3.7025 8 6 2.5596 -1.7429 3.8686 9 6 3.7391 -1.5675 4.8385 10 8 3.2737 -0.9350 6.0332 11 6 2.7555 0.3824 5.8341 12 6 1.5303 0.3093 4.9151 13 7 2.0198 -0.6924 -1.1995 14 6 3.4421 -0.3876 -1.4419 15 6 3.1065 -0.2778 -2.9359 16 6 3.8064 0.8534 -3.6440 17 1 3.3162 1.8100 -3.7495 18 6 5.0725 0.6674 -4.1572 19 7 5.6697 -0.4973 -4.0283 20 14 5.9397 2.0694 -5.0356 21 1 5.0604 3.2661 -5.0461 22 1 7.2041 2.3911 -4.3264 23 1 6.2441 1.6660 -6.4319 24 6 1.7051 0.0757 -2.4186 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6011 -1.7177 1.2981 29 1 3.1259 -0.8044 1.2029 30 1 1.8486 -2.4610 4.2767 31 1 2.9253 -2.0952 2.9040 32 1 4.5068 -0.9486 4.3741 33 1 4.1572 -2.5441 5.0828 34 1 3.5197 1.0085 5.3734 35 1 2.4653 0.8093 6.7942 36 1 1.2139 1.3165 4.6440 37 1 0.7175 -0.2061 5.4267 38 1 3.7660 0.5543 -0.9993 39 1 4.1100 -1.2163 -1.2067 40 1 3.1577 -1.2235 -3.4755 41 1 6.5603 -0.6284 -4.3896 42 1 0.9007 -0.3604 -3.0110 43 1 1.5644 1.1410 -2.2364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256335540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:17 Heat of formation + Delta-G solvation = -42.759695 kcal Electronic energy + Delta-G solvation = -22859.135452 eV Core-core repulsion = 19519.614043 eV Total energy + Delta-G solvation = -3339.521409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57327 -39.22874 -38.29458 -34.95910 -33.86543 -32.27846 -31.66293 -28.88421 -27.31976 -27.25173 -24.74524 -24.22909 -23.91777 -22.39326 -20.33825 -19.03195 -18.67716 -17.51457 -16.70670 -16.47365 -16.02264 -15.95221 -15.38702 -15.23942 -14.81702 -14.53238 -14.11687 -13.89645 -13.74730 -13.21975 -13.07773 -12.81267 -12.15288 -12.04834 -11.95899 -11.72227 -11.44279 -11.28480 -11.24167 -11.03956 -11.01443 -10.74444 -10.54997 -10.48597 -10.21696 -9.85161 -9.62286 -9.12254 -8.90903 -8.78874 -8.43897 -7.97937 -6.06111 -4.09937 2.57925 2.67352 3.27577 3.35979 3.40274 3.47118 4.32936 4.39947 4.42746 4.66745 4.73164 4.85001 4.91541 4.99675 5.08736 5.17108 5.25035 5.27140 5.30937 5.40549 5.48133 5.58317 5.68278 5.87104 5.90753 6.05572 6.19277 6.21683 6.30357 6.45566 6.50950 6.61539 6.70870 6.72880 6.80284 7.10451 7.14258 7.21672 7.73495 7.91406 8.05436 8.12848 8.38158 8.93661 9.55135 11.03540 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.003700 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.461135 B = 7565.147406 C = 8095.293075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.052 0.948 4 C -0.127 4.127 5 C 0.522 3.478 6 O -0.533 6.533 7 N -0.623 5.623 8 C 0.072 3.928 9 C 0.046 3.954 10 O -0.381 6.381 11 C 0.048 3.952 12 C 0.077 3.923 13 N -0.482 5.482 14 C 0.003 3.997 15 C 0.041 3.959 16 C -0.515 4.515 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.000 4.000 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -2.895 18.389 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.070 0.930 4 C -0.167 4.167 5 C 0.311 3.689 6 O -0.410 6.410 7 N -0.359 5.359 8 C -0.052 4.052 9 C -0.032 4.032 10 O -0.300 6.300 11 C -0.030 4.030 12 C -0.046 4.046 13 N -0.205 5.205 14 C -0.126 4.126 15 C 0.022 3.978 16 C -0.553 4.553 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.090 -3.176 18.561 19.791 hybrid contribution 0.857 1.610 -0.569 1.911 sum -5.234 -1.566 17.992 18.803 Atomic orbital electron populations 1.21832 0.94638 1.01443 1.02089 1.21861 0.95909 0.96268 0.90705 0.92984 1.21629 1.03119 1.00222 0.91736 1.20938 0.77634 0.86167 0.84177 1.90666 1.42175 1.22066 1.86053 1.48203 1.61304 1.20635 1.05797 1.22556 0.95708 0.85082 1.01808 1.23090 0.94979 0.99122 0.85977 1.87956 1.81184 1.29622 1.31188 1.23001 0.94989 0.84633 1.00355 1.22252 0.97513 0.99250 0.85600 1.68906 1.08064 1.43117 1.00415 1.24031 0.88523 0.98480 1.01589 1.20098 0.88750 0.97895 0.91027 1.21096 1.00506 0.97463 1.36239 0.92391 1.25007 0.97481 0.95533 0.95552 1.69976 1.14331 1.22576 1.45590 0.86575 0.79582 0.82616 0.79481 1.19703 1.21023 1.20889 1.23936 1.01192 0.95896 0.91861 0.91740 0.92768 0.92910 0.88549 0.88713 0.90344 0.88122 0.92283 0.87430 0.92521 0.87674 0.88079 0.90856 0.93022 0.91874 0.91782 0.92968 0.92094 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.97 37.16 0.33 -1.96 16 2 C 0.06 1.09 1.38 -67.71 -0.09 1.00 16 3 H 0.05 1.04 7.29 -51.93 -0.38 0.66 16 4 C -0.13 -1.82 3.73 -27.88 -0.10 -1.92 16 5 C 0.52 7.47 7.34 -10.98 -0.08 7.39 16 6 O -0.53 -9.32 13.65 5.56 0.08 -9.25 16 7 N -0.62 -7.06 3.01 -172.00 -0.52 -7.58 16 8 C 0.07 0.61 6.53 -3.32 -0.02 0.59 16 9 C 0.05 0.37 7.00 37.53 0.26 0.63 16 10 O -0.38 -3.72 10.74 -35.23 -0.38 -4.10 16 11 C 0.05 0.41 6.99 37.33 0.26 0.67 16 12 C 0.08 0.76 6.64 -3.51 -0.02 0.73 16 13 N -0.48 -9.58 6.13 -236.59 -1.45 -11.03 16 14 C 0.00 0.06 6.61 -7.54 -0.05 0.01 16 15 C 0.04 1.03 3.77 -91.24 -0.34 0.69 16 16 C -0.51 -14.06 8.82 -34.44 -0.30 -14.36 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -25.36 13.26 55.43 0.74 -24.62 16 20 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C 0.00 0.00 6.26 -7.54 -0.05 -0.05 16 25 H 0.06 1.05 6.16 -51.93 -0.32 0.73 16 26 H 0.05 0.88 7.44 -51.93 -0.39 0.50 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.22 7.76 -51.93 -0.40 0.82 16 29 H 0.09 1.34 7.38 -51.93 -0.38 0.95 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.80 6.08 -51.93 -0.32 0.48 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.10 7.08 -51.93 -0.37 0.73 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 1.20 7.62 -51.93 -0.40 0.80 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.17 7.76 -51.93 -0.40 0.77 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -31.01 339.24 -8.88 -39.89 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.12 Total: 0.35 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.31 Total: -4.84 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -1.23 Total: -43.23 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.30 Total: -13.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.01 -8.88 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256335540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.873 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds