Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47256 * 2 1 4 4 O 1.42895 * 109.46924 * 240.00248 * 2 1 3 5 5 C 1.42897 * 114.00251 * 90.00021 * 4 2 1 6 6 C 1.53005 * 109.47605 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50044 * 243.75253 * 6 5 4 8 8 C 1.52990 * 117.50195 * 175.08671 * 6 5 4 9 9 C 1.50697 * 109.46876 * 120.00434 * 2 1 3 10 10 O 1.21276 * 120.00265 * 120.00548 * 9 2 1 11 11 N 1.34777 * 119.99959 * 299.99307 * 9 2 1 12 12 C 1.47429 * 125.64754 * 0.05126 * 11 9 2 13 13 C 1.54910 * 104.83088 * 204.09112 * 12 11 9 14 14 C 1.55161 * 101.58284 * 322.98842 * 13 12 11 15 15 H 1.09008 * 110.87257 * 277.07320 * 14 13 12 16 16 N 1.46499 * 110.72256 * 153.86606 * 14 13 12 17 17 C 1.36939 * 119.99933 * 91.75438 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 120.00466 * 21 19 17 24 24 H 1.48506 * 109.47018 * 240.00565 * 21 19 17 25 25 C 1.47018 * 125.64894 * 180.02562 * 11 9 2 26 26 H 1.09000 * 109.47298 * 59.99801 * 1 2 3 27 27 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46873 * 299.99991 * 1 2 3 29 29 H 1.09002 * 109.47331 * 299.99656 * 5 4 2 30 30 H 1.09001 * 109.47215 * 59.99510 * 5 4 2 31 31 H 1.09004 * 115.54659 * 29.41670 * 6 5 4 32 32 H 1.08994 * 117.49808 * 359.97438 * 7 6 5 33 33 H 1.08999 * 117.50028 * 145.02014 * 7 6 5 34 34 H 1.09005 * 117.49887 * 214.97888 * 8 6 5 35 35 H 1.09003 * 117.50324 * 359.97438 * 8 6 5 36 36 H 1.08998 * 110.36380 * 322.92563 * 12 11 9 37 37 H 1.08997 * 110.37099 * 85.25249 * 12 11 9 38 38 H 1.08994 * 111.00573 * 204.91801 * 13 12 11 39 39 H 1.09004 * 111.00601 * 81.06057 * 13 12 11 40 40 H 0.97001 * 119.99790 * 271.47411 * 16 14 13 41 41 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88522 * 59.56274 * 25 11 9 43 43 H 1.09007 * 110.01054 * 298.46964 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7091 -0.6405 -3.4789 7 6 4.1072 -0.3216 -4.0122 8 6 2.8699 0.0768 -4.8206 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1191 11 7 1.7068 -0.2500 2.4545 12 6 0.8703 0.9314 2.7337 13 6 1.2941 1.3915 4.1508 14 6 1.5390 0.0329 4.8592 15 1 0.6029 -0.3878 5.2267 16 7 2.5016 0.1847 5.9530 17 6 2.0601 0.4511 7.2216 18 1 1.0025 0.5536 7.4149 19 6 2.9718 0.5892 8.2592 20 7 4.2608 0.4646 8.0235 21 14 2.3696 0.9532 9.9895 22 1 0.8875 1.0458 9.9886 23 1 2.7964 -0.1378 10.9020 24 1 2.9461 2.2407 10.4536 25 6 2.1267 -0.8430 3.7326 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2538 0.6547 -2.5589 30 1 2.9319 0.9514 -2.0450 31 1 2.3877 -1.6818 -3.5003 32 1 4.6642 0.4750 -3.5193 33 1 4.7054 -1.1531 -4.3849 34 1 2.6547 -0.4927 -5.7248 35 1 2.6127 1.1354 -4.8595 36 1 1.0684 1.7172 2.0047 37 1 -0.1853 0.6600 2.7228 38 1 0.4924 1.9468 4.6374 39 1 2.2092 1.9826 4.1124 40 1 3.4515 0.0925 5.7794 41 1 4.8979 0.5614 8.7485 42 1 3.2147 -0.8507 3.7981 43 1 1.7433 -1.8601 3.8158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265420620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -37.452808 kcal Electronic energy + Delta-G solvation = -22150.281343 eV Core-core repulsion = 18810.990058 eV Total energy + Delta-G solvation = -3339.291285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14176 -38.58331 -37.35965 -36.50774 -34.23103 -32.20909 -30.97780 -29.56427 -27.69510 -27.32449 -24.75506 -23.36436 -22.69524 -22.33877 -21.06985 -20.16736 -19.26931 -17.52193 -17.40280 -16.60866 -16.12708 -15.83370 -15.60054 -14.91868 -14.58621 -14.37337 -13.82378 -13.53909 -13.49975 -13.31374 -13.08123 -12.59204 -12.49748 -12.29492 -11.98669 -11.86067 -11.64594 -11.58384 -11.28663 -11.16377 -10.87059 -10.77137 -10.72630 -10.57430 -10.34816 -10.08827 -9.91467 -9.79202 -9.37165 -9.00350 -8.41927 -7.07477 -5.84648 -3.15540 2.69308 2.78191 3.38985 3.40728 3.44757 3.47112 3.72672 4.41227 4.52109 4.52770 4.57110 4.70520 4.74580 4.85548 4.98547 5.01219 5.13822 5.20383 5.28427 5.30400 5.33689 5.39609 5.49492 5.54093 5.55207 5.58547 5.73778 5.78529 5.89977 5.90887 5.93011 6.11562 6.23881 6.33953 6.52082 6.57357 6.85961 6.94967 7.63063 7.69201 8.31667 8.33961 9.44159 9.98304 10.32855 11.37553 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039941 B = 0.002823 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.872293 B = 9916.809738 C =10207.982207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.176 4.176 8 C -0.175 4.175 9 C 0.526 3.474 10 O -0.524 6.524 11 N -0.611 5.611 12 C 0.095 3.905 13 C -0.156 4.156 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.715 5.715 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.101 3.899 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 3.095 -22.145 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.312 3.688 10 O -0.399 6.399 11 N -0.347 5.347 12 C -0.028 4.028 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.355 5.355 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.022 4.022 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.430 2.342 -22.105 23.438 hybrid contribution 0.014 0.561 0.899 1.059 sum -7.416 2.902 -21.206 22.652 Atomic orbital electron populations 1.22376 0.93672 1.03986 1.03435 1.21791 0.95044 0.96113 0.85474 0.89785 1.88031 1.86534 1.33933 1.18710 1.22107 0.99154 0.91997 0.85318 1.22102 1.00546 1.01106 0.93231 1.23088 0.90856 1.03657 1.03741 1.22990 1.02681 1.01044 0.94469 1.19933 0.80830 0.84921 0.83066 1.90719 1.37373 1.25973 1.85863 1.48392 1.51264 1.29833 1.05216 1.22526 0.94512 0.87054 0.98691 1.23589 1.02169 1.01058 0.92877 1.21189 0.93961 0.91539 0.87286 0.91428 1.42386 1.04733 1.84647 1.03781 1.19268 0.92500 1.41123 0.84724 0.90863 1.24791 0.95299 1.02378 0.98257 1.69681 1.00174 1.56156 1.31666 0.86094 0.77755 0.77522 0.84628 1.20469 1.21781 1.21808 1.22366 1.00668 0.97384 0.81828 0.91445 0.91113 0.90118 0.92742 0.93057 0.86694 0.88598 0.88508 0.88403 0.88694 0.91401 0.91267 0.90428 0.90606 0.77919 0.93373 0.91095 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.34 37.16 0.35 -1.33 16 2 C 0.08 0.95 2.49 -27.88 -0.07 0.88 16 3 H 0.08 0.85 7.49 -51.93 -0.39 0.47 16 4 O -0.35 -4.84 9.52 -55.14 -0.52 -5.36 16 5 C 0.09 0.90 6.03 37.16 0.22 1.12 16 6 C -0.15 -1.41 6.05 -90.62 -0.55 -1.96 16 7 C -0.18 -1.46 10.18 -26.69 -0.27 -1.73 16 8 C -0.17 -1.22 10.25 -26.70 -0.27 -1.49 16 9 C 0.53 8.67 7.29 -10.99 -0.08 8.59 16 10 O -0.52 -11.01 16.83 -14.35 -0.24 -11.25 16 11 N -0.61 -9.47 3.32 -170.52 -0.57 -10.03 16 12 C 0.10 1.17 5.13 -2.53 -0.01 1.16 16 13 C -0.16 -2.41 6.77 -24.58 -0.17 -2.58 16 14 C 0.17 3.23 3.62 -66.09 -0.24 2.99 16 15 H 0.07 1.25 8.09 -51.92 -0.42 0.83 16 16 N -0.72 -17.26 5.22 -51.64 -0.27 -17.53 16 17 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.10 1.80 6.62 -3.06 -0.02 1.78 16 26 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.67 4.99 -51.93 -0.26 0.41 16 29 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 30 H 0.05 0.47 7.82 -51.93 -0.41 0.07 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 7.36 -51.93 -0.38 0.29 16 37 H 0.07 0.72 7.07 -51.93 -0.37 0.35 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -32.69 351.20 -9.06 -41.75 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.10 Total: 6.87 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.36 Total: 0.35 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.77 Total: -16.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.69 -9.06 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265420620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.301 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds