Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47145 * 2 1 4 4 O 1.42903 * 109.46382 * 119.99938 * 2 1 3 5 5 C 1.42895 * 114.00116 * 269.99565 * 4 2 1 6 6 C 1.53002 * 109.47443 * 180.02562 * 5 4 2 7 7 C 1.53003 * 117.49693 * 243.75084 * 6 5 4 8 8 C 1.52999 * 117.49865 * 175.09109 * 6 5 4 9 9 C 1.50701 * 109.47294 * 239.99668 * 2 1 3 10 10 O 1.21279 * 120.00260 * 252.27393 * 9 2 1 11 11 N 1.34775 * 119.99665 * 72.27517 * 9 2 1 12 12 C 1.47426 * 125.65126 * 5.30405 * 11 9 2 13 13 C 1.54909 * 104.83130 * 204.09231 * 12 11 9 14 14 C 1.55154 * 101.58222 * 322.98997 * 13 12 11 15 15 H 1.08998 * 110.72241 * 276.96411 * 14 13 12 16 16 N 1.46500 * 110.71766 * 153.86845 * 14 13 12 17 17 C 1.36933 * 119.99937 * 86.45540 * 16 14 13 18 18 H 1.07996 * 120.00533 * 0.02562 * 17 16 14 19 19 C 1.38821 * 119.99799 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47124 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47282 * 119.99827 * 21 19 17 24 24 H 1.48502 * 109.47295 * 239.99912 * 21 19 17 25 25 C 1.47018 * 125.64653 * 184.99834 * 11 9 2 26 26 H 1.08992 * 109.47103 * 295.17443 * 1 2 3 27 27 H 1.08995 * 109.47132 * 175.16633 * 1 2 3 28 28 H 1.09001 * 109.46349 * 55.17168 * 1 2 3 29 29 H 1.08998 * 109.47313 * 300.00862 * 5 4 2 30 30 H 1.09003 * 109.47264 * 60.00755 * 5 4 2 31 31 H 1.09002 * 115.54753 * 29.41768 * 6 5 4 32 32 H 1.08996 * 117.49933 * 359.97438 * 7 6 5 33 33 H 1.08997 * 117.49804 * 145.01951 * 7 6 5 34 34 H 1.09003 * 117.49206 * 214.97509 * 8 6 5 35 35 H 1.09000 * 117.50222 * 359.97328 * 8 6 5 36 36 H 1.08999 * 110.36454 * 322.93284 * 12 11 9 37 37 H 1.09000 * 110.36393 * 85.25171 * 12 11 9 38 38 H 1.08998 * 111.00386 * 81.06386 * 13 12 11 39 39 H 1.09000 * 111.00138 * 204.91371 * 13 12 11 40 40 H 0.97005 * 119.99918 * 266.45488 * 16 14 13 41 41 H 0.96996 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88348 * 298.39664 * 25 11 9 43 43 H 1.08997 * 109.88839 * 59.55668 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.2000 0.1829 2.2941 6 6 2.7088 -0.6406 3.4790 7 6 1.8120 -0.7281 4.7155 8 6 3.0887 0.1155 4.7536 9 6 2.0324 -0.7105 -1.2304 10 8 2.5361 -1.8094 -1.1330 11 7 1.9220 -0.1245 -2.4391 12 6 1.4355 1.2445 -2.6891 13 6 0.9194 1.2214 -4.1495 14 6 1.9539 0.2869 -4.8308 15 1 2.8497 0.8417 -5.1098 16 7 1.3672 -0.3694 -6.0017 17 6 1.3898 0.2555 -7.2199 18 1 1.8406 1.2320 -7.3177 19 6 0.8344 -0.3667 -8.3296 20 7 0.2864 -1.5575 -8.2109 21 14 0.8646 0.4860 -9.9913 22 1 1.5332 1.8053 -9.8585 23 1 1.6118 -0.3514 -10.9639 24 1 -0.5265 0.6816 -10.4727 25 6 2.2728 -0.7426 -3.7261 26 1 -0.3633 0.4371 0.9300 27 1 -0.3633 -1.0240 -0.0866 28 1 -0.3632 0.5870 -0.8436 29 1 2.9319 0.9512 2.0451 30 1 1.2537 0.6546 2.5589 31 1 3.2981 -1.5207 3.2213 32 1 0.8597 -0.1987 4.6851 33 1 1.8116 -1.6656 5.2716 34 1 3.9277 -0.2674 5.3348 35 1 2.9766 1.1997 4.7480 36 1 0.6242 1.4898 -2.0038 37 1 2.2502 1.9613 -2.5859 38 1 -0.0837 0.7983 -4.2027 39 1 0.9450 2.2186 -4.5887 40 1 0.9626 -1.2467 -5.9141 41 1 -0.1021 -1.9922 -8.9862 42 1 3.3344 -0.9892 -3.7419 43 1 1.6786 -1.6435 -3.8790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265420621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -38.420916 kcal Electronic energy + Delta-G solvation = -22133.220942 eV Core-core repulsion = 18793.887676 eV Total energy + Delta-G solvation = -3339.333266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12663 -38.60245 -37.38068 -36.51394 -34.19646 -32.14825 -31.03499 -29.55047 -27.75132 -27.35291 -24.68550 -23.31979 -22.73998 -22.43920 -21.07356 -20.09374 -19.22430 -17.53289 -17.43835 -16.72736 -16.17573 -15.64959 -15.51575 -14.92227 -14.58762 -14.50170 -14.11909 -13.61014 -13.33564 -13.22327 -12.89054 -12.68749 -12.59994 -12.26502 -11.93687 -11.83533 -11.77986 -11.58695 -11.22676 -11.17169 -10.87924 -10.79685 -10.72878 -10.63084 -10.35925 -10.07817 -9.89957 -9.78737 -9.39764 -8.99683 -8.42281 -7.06849 -5.84272 -3.15105 2.70845 2.73078 3.39033 3.39730 3.44773 3.47202 3.70033 4.40189 4.51582 4.52586 4.54133 4.68752 4.74464 4.86283 4.95870 4.99579 5.14412 5.18784 5.27486 5.28437 5.32310 5.41146 5.49941 5.53456 5.54766 5.57983 5.73306 5.74963 5.88988 5.90145 6.00462 6.11578 6.23124 6.33960 6.52354 6.56506 6.87438 6.94154 7.63478 7.68577 8.31143 8.33590 9.44536 9.98778 10.33399 11.37955 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052839 B = 0.002732 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.786380 B =10247.683577 C =10370.156934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 H 0.082 0.918 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.527 3.473 10 O -0.524 6.524 11 N -0.612 5.612 12 C 0.092 3.908 13 C -0.154 4.154 14 C 0.172 3.828 15 H 0.064 0.936 16 N -0.716 5.716 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.103 3.897 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 8.031 22.872 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.099 0.901 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.313 3.687 10 O -0.399 6.399 11 N -0.348 5.348 12 C -0.031 4.031 13 C -0.195 4.195 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.357 5.357 17 C -0.375 4.375 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.020 4.020 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.102 7.277 22.835 24.058 hybrid contribution -0.290 0.485 -0.916 1.076 sum 1.812 7.762 21.919 23.323 Atomic orbital electron populations 1.22257 0.93408 1.04141 1.03047 1.21815 0.95216 0.95938 0.85393 0.90068 1.88047 1.86518 1.33974 1.18693 1.22108 0.98967 0.92049 0.85490 1.22127 1.04093 1.02526 0.88282 1.23083 0.94897 1.02147 1.01279 1.22989 0.99372 0.98817 0.99970 1.19923 0.79427 0.86216 0.83087 1.90715 1.43360 1.20363 1.85483 1.48399 1.64723 1.15858 1.05777 1.22547 0.98391 0.83207 0.99001 1.23559 1.01632 1.02101 0.92208 1.21179 0.94665 0.91511 0.86633 0.91797 1.42373 1.68787 1.20900 1.03614 1.19248 1.32156 1.00518 0.85598 0.90890 1.24789 1.01008 0.96775 0.98164 1.69675 1.43605 1.14705 1.29694 0.86097 0.77214 0.78509 0.84191 1.20483 1.21791 1.21813 1.22293 1.00497 0.97589 0.81632 0.91323 0.90963 0.90450 0.92788 0.93005 0.86589 0.88669 0.88555 0.88365 0.88672 0.91097 0.91551 0.90519 0.90479 0.77925 0.93379 0.91526 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.37 37.16 0.35 -1.42 16 2 C 0.08 0.96 2.42 -27.88 -0.07 0.89 16 3 H 0.08 0.78 7.52 -51.93 -0.39 0.39 16 4 O -0.35 -4.81 9.55 -54.83 -0.52 -5.33 16 5 C 0.09 0.87 6.03 37.16 0.22 1.09 16 6 C -0.15 -1.38 6.05 -90.62 -0.55 -1.93 16 7 C -0.18 -1.31 10.18 -26.69 -0.27 -1.58 16 8 C -0.17 -1.18 10.25 -26.69 -0.27 -1.46 16 9 C 0.53 8.67 7.15 -10.99 -0.08 8.59 16 10 O -0.52 -10.94 16.88 -14.05 -0.24 -11.17 16 11 N -0.61 -9.50 3.33 -170.52 -0.57 -10.06 16 12 C 0.09 1.14 6.50 -2.53 -0.02 1.12 16 13 C -0.15 -2.39 6.77 -24.58 -0.17 -2.56 16 14 C 0.17 3.23 3.58 -66.09 -0.24 2.99 16 15 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 16 N -0.72 -17.28 5.25 -51.65 -0.27 -17.55 16 17 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.10 1.84 6.63 -3.06 -0.02 1.82 16 26 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.73 5.98 -51.93 -0.31 0.42 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.05 0.41 7.52 -51.93 -0.39 0.02 16 31 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.71 5.49 -51.93 -0.28 0.42 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 10.07 7.51 -40.82 -0.31 9.77 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -32.58 352.49 -9.04 -41.61 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.10 Total: 6.74 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.35 Total: 0.51 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.76 Total: -16.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.58 -9.04 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265420621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds