Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47145 * 2 1 4 4 O 1.42903 * 109.46382 * 119.99938 * 2 1 3 5 5 C 1.42895 * 114.00116 * 269.99565 * 4 2 1 6 6 C 1.53002 * 109.47443 * 180.02562 * 5 4 2 7 7 C 1.53003 * 117.49693 * 243.75084 * 6 5 4 8 8 C 1.52999 * 117.49865 * 175.09109 * 6 5 4 9 9 C 1.50701 * 109.47294 * 239.99668 * 2 1 3 10 10 O 1.21279 * 120.00260 * 252.27393 * 9 2 1 11 11 N 1.34775 * 119.99665 * 72.27517 * 9 2 1 12 12 C 1.47426 * 125.65126 * 5.30405 * 11 9 2 13 13 C 1.54909 * 104.83130 * 204.09231 * 12 11 9 14 14 C 1.55154 * 101.58222 * 322.98997 * 13 12 11 15 15 H 1.08998 * 110.72241 * 276.96411 * 14 13 12 16 16 N 1.46500 * 110.71766 * 153.86845 * 14 13 12 17 17 C 1.36933 * 119.99937 * 86.45540 * 16 14 13 18 18 H 1.07996 * 120.00533 * 0.02562 * 17 16 14 19 19 C 1.38821 * 119.99799 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47124 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47282 * 119.99827 * 21 19 17 24 24 H 1.48502 * 109.47295 * 239.99912 * 21 19 17 25 25 C 1.47018 * 125.64653 * 184.99834 * 11 9 2 26 26 H 1.08992 * 109.47103 * 295.17443 * 1 2 3 27 27 H 1.08995 * 109.47132 * 175.16633 * 1 2 3 28 28 H 1.09001 * 109.46349 * 55.17168 * 1 2 3 29 29 H 1.08998 * 109.47313 * 300.00862 * 5 4 2 30 30 H 1.09003 * 109.47264 * 60.00755 * 5 4 2 31 31 H 1.09002 * 115.54753 * 29.41768 * 6 5 4 32 32 H 1.08996 * 117.49933 * 359.97438 * 7 6 5 33 33 H 1.08997 * 117.49804 * 145.01951 * 7 6 5 34 34 H 1.09003 * 117.49206 * 214.97509 * 8 6 5 35 35 H 1.09000 * 117.50222 * 359.97328 * 8 6 5 36 36 H 1.08999 * 110.36454 * 322.93284 * 12 11 9 37 37 H 1.09000 * 110.36393 * 85.25171 * 12 11 9 38 38 H 1.08998 * 111.00386 * 81.06386 * 13 12 11 39 39 H 1.09000 * 111.00138 * 204.91371 * 13 12 11 40 40 H 0.97005 * 119.99918 * 266.45488 * 16 14 13 41 41 H 0.96996 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88348 * 298.39664 * 25 11 9 43 43 H 1.08997 * 109.88839 * 59.55668 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.2000 0.1829 2.2941 6 6 2.7088 -0.6406 3.4790 7 6 1.8120 -0.7281 4.7155 8 6 3.0887 0.1155 4.7536 9 6 2.0324 -0.7105 -1.2304 10 8 2.5361 -1.8094 -1.1330 11 7 1.9220 -0.1245 -2.4391 12 6 1.4355 1.2445 -2.6891 13 6 0.9194 1.2214 -4.1495 14 6 1.9539 0.2869 -4.8308 15 1 2.8497 0.8417 -5.1098 16 7 1.3672 -0.3694 -6.0017 17 6 1.3898 0.2555 -7.2199 18 1 1.8406 1.2320 -7.3177 19 6 0.8344 -0.3667 -8.3296 20 7 0.2864 -1.5575 -8.2109 21 14 0.8646 0.4860 -9.9913 22 1 1.5332 1.8053 -9.8585 23 1 1.6118 -0.3514 -10.9639 24 1 -0.5265 0.6816 -10.4727 25 6 2.2728 -0.7426 -3.7261 26 1 -0.3633 0.4371 0.9300 27 1 -0.3633 -1.0240 -0.0866 28 1 -0.3632 0.5870 -0.8436 29 1 2.9319 0.9512 2.0451 30 1 1.2537 0.6546 2.5589 31 1 3.2981 -1.5207 3.2213 32 1 0.8597 -0.1987 4.6851 33 1 1.8116 -1.6656 5.2716 34 1 3.9277 -0.2674 5.3348 35 1 2.9766 1.1997 4.7480 36 1 0.6242 1.4898 -2.0038 37 1 2.2502 1.9613 -2.5859 38 1 -0.0837 0.7983 -4.2027 39 1 0.9450 2.2186 -4.5887 40 1 0.9626 -1.2467 -5.9141 41 1 -0.1021 -1.9922 -8.9862 42 1 3.3344 -0.9892 -3.7419 43 1 1.6786 -1.6435 -3.8790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265420621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -59.315212 kcal Electronic energy + Delta-G solvation = -22134.126987 eV Core-core repulsion = 18793.887676 eV Total energy + Delta-G solvation = -3340.239310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34771 -39.53616 -38.57807 -37.41050 -35.96198 -33.60933 -32.37844 -30.96613 -29.26315 -28.06701 -26.11413 -24.96686 -23.60905 -23.22566 -21.74777 -21.59062 -20.41141 -19.33254 -18.52351 -17.84238 -17.39456 -16.81148 -16.51835 -16.20327 -15.84501 -15.65480 -15.28674 -15.11632 -14.74758 -14.30407 -14.15343 -13.81636 -13.69856 -13.34208 -13.20030 -13.04245 -12.90285 -12.71151 -12.60581 -12.37966 -12.32531 -12.06953 -11.97632 -11.74674 -11.67079 -11.43279 -11.31591 -10.94925 -10.84315 -10.43211 -9.73628 -9.04684 -7.94659 -5.25167 1.47672 1.49446 1.50694 1.60029 1.62297 2.55766 2.64912 2.97393 3.34396 3.42018 3.74029 3.80148 3.85235 3.91796 3.95196 3.98597 4.01832 4.16117 4.25743 4.32846 4.40472 4.46113 4.51383 4.55245 4.68429 4.72748 4.77383 4.78610 4.85176 4.98155 5.01818 5.14929 5.18324 5.23389 5.25202 5.28081 5.45249 5.54943 6.11191 6.25850 6.47680 7.05424 7.32046 8.03812 8.27358 9.29183 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052839 B = 0.002732 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.786380 B =10247.683577 C =10370.156934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.084 3.916 3 H 0.119 0.881 4 O -0.389 6.389 5 C 0.087 3.913 6 C -0.179 4.179 7 C -0.176 4.176 8 C -0.158 4.158 9 C 0.518 3.482 10 O -0.582 6.582 11 N -0.609 5.609 12 C 0.097 3.903 13 C -0.144 4.144 14 C 0.166 3.834 15 H 0.071 0.929 16 N -0.732 5.732 17 C -0.235 4.235 18 H 0.086 0.914 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.260 1.260 23 H -0.299 1.299 24 H -0.295 1.295 25 C 0.110 3.890 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 11.607 24.629 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.308 6.308 5 C 0.012 3.988 6 C -0.197 4.197 7 C -0.213 4.213 8 C -0.195 4.195 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.344 5.344 12 C -0.024 4.024 13 C -0.184 4.184 14 C 0.056 3.944 15 H 0.089 0.911 16 N -0.372 5.372 17 C -0.367 4.367 18 H 0.104 0.896 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.226 1.226 24 H -0.222 1.222 25 C -0.015 4.015 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.966 10.938 24.638 27.029 hybrid contribution -0.177 -0.641 -1.357 1.511 sum 1.789 10.298 23.282 25.520 Atomic orbital electron populations 1.22259 0.91756 1.03155 1.05169 1.21882 0.96175 0.96572 0.83021 0.86321 1.88025 1.86851 1.36047 1.19870 1.22326 1.00459 0.91823 0.84227 1.22127 1.05552 1.02740 0.89315 1.23181 0.95631 1.02584 0.99918 1.23090 0.99124 0.99584 0.97697 1.20918 0.78288 0.85750 0.84326 1.90683 1.45996 1.23034 1.86389 1.48470 1.64231 1.16980 1.04705 1.22766 1.00540 0.81745 0.97330 1.23358 0.99427 1.01522 0.94113 1.21388 0.95660 0.91992 0.85354 0.91113 1.42571 1.69241 1.20636 1.04758 1.19675 1.30103 1.00563 0.86351 0.89628 1.25624 1.01947 0.97655 1.01849 1.69844 1.45707 1.16565 1.30196 0.85045 0.76762 0.78082 0.79672 1.18401 1.22612 1.22243 1.21995 0.99549 0.96684 0.83222 0.88416 0.93461 0.89105 0.91575 0.90755 0.89070 0.87541 0.88572 0.87815 0.87005 0.87518 0.88384 0.92282 0.88823 0.79704 0.94117 0.92244 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.37 71.98 0.67 -2.26 16 2 C 0.08 1.86 2.42 29.85 0.07 1.93 16 3 H 0.12 1.72 7.52 -2.39 -0.02 1.70 16 4 O -0.39 -10.08 9.55 -130.24 -1.24 -11.32 16 5 C 0.09 1.46 6.03 71.98 0.43 1.90 16 6 C -0.18 -3.05 6.05 -10.79 -0.07 -3.12 16 7 C -0.18 -2.27 10.18 30.62 0.31 -1.96 16 8 C -0.16 -1.78 10.25 30.62 0.31 -1.46 16 9 C 0.52 16.74 7.15 87.66 0.63 17.36 16 10 O -0.58 -25.16 16.88 15.72 0.27 -24.89 16 11 N -0.61 -18.13 3.33 -811.79 -2.70 -20.83 16 12 C 0.10 2.04 6.50 86.85 0.56 2.61 16 13 C -0.14 -4.12 6.77 31.99 0.22 -3.90 16 14 C 0.17 6.12 3.58 46.18 0.17 6.28 16 15 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 16 N -0.73 -35.85 5.25 -317.32 -1.67 -37.51 16 17 C -0.24 -12.48 9.98 84.04 0.84 -11.64 16 18 H 0.09 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 20 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 21 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 25 C 0.11 3.99 6.63 86.73 0.58 4.57 16 26 H 0.10 1.18 7.79 -2.39 -0.02 1.16 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.33 5.98 -2.39 -0.01 1.32 16 29 H 0.07 0.91 8.08 -2.39 -0.02 0.90 16 30 H 0.07 0.89 7.52 -2.39 -0.02 0.87 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 1.12 8.03 -2.39 -0.02 1.10 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 1.56 5.49 -2.39 -0.01 1.55 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 40 H 0.37 20.17 7.51 -92.70 -0.70 19.47 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.04 1.80 7.69 -2.39 -0.02 1.79 16 Total: -1.00 -74.53 352.49 2.46 -72.07 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.30 Total: 28.16 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.19 Total: 6.35 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.08 Total: -117.44 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.98 Total: -36.21 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.53 2.46 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265420621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.757 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds