Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47292 * 2 1 4 4 C 1.53002 * 109.47325 * 119.99936 * 2 1 3 5 5 C 1.53000 * 117.49592 * 299.99845 * 4 2 1 6 6 C 1.52999 * 60.03465 * 107.47831 * 5 4 2 7 7 N 1.46504 * 109.47057 * 239.99470 * 2 1 3 8 8 C 1.46499 * 120.00007 * 300.00284 * 7 2 1 9 9 C 1.34775 * 119.99789 * 119.99843 * 7 2 1 10 10 O 1.21355 * 120.00104 * 356.42025 * 9 7 2 11 11 C 1.49452 * 120.00216 * 176.41947 * 9 7 2 12 12 O 1.21347 * 119.99496 * 5.91547 * 11 9 7 13 13 N 1.34773 * 120.00379 * 185.92028 * 11 9 7 14 14 C 1.46501 * 119.99944 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.46626 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.46909 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47172 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99862 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99928 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00030 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47265 * 89.99662 * 21 19 17 23 23 H 1.48501 * 109.46872 * 210.00148 * 21 19 17 24 24 H 1.48501 * 109.46676 * 329.99548 * 21 19 17 25 25 H 1.09001 * 109.46889 * 300.00180 * 1 2 3 26 26 H 1.09000 * 109.47335 * 60.00225 * 1 2 3 27 27 H 1.09008 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.09001 * 115.56490 * 154.30920 * 4 2 1 29 29 H 1.09000 * 117.49877 * 214.97677 * 5 4 2 30 30 H 1.09001 * 117.50178 * 359.97438 * 5 4 2 31 31 H 1.09001 * 117.50377 * 107.49831 * 6 5 4 32 32 H 1.09001 * 117.49913 * 252.52662 * 6 5 4 33 33 H 1.09003 * 109.47229 * 95.97809 * 8 7 2 34 34 H 1.09006 * 109.46569 * 215.97485 * 8 7 2 35 35 H 1.08995 * 109.47178 * 335.97021 * 8 7 2 36 36 H 0.97003 * 119.99545 * 359.97438 * 13 11 9 37 37 H 1.08993 * 109.46764 * 299.99603 * 14 13 11 38 38 H 1.08998 * 109.47254 * 60.00156 * 14 13 11 39 39 H 1.09000 * 109.47285 * 299.99774 * 15 14 13 40 40 H 1.08993 * 109.47735 * 60.00134 * 15 14 13 41 41 H 1.09000 * 109.46929 * 299.99950 * 16 15 14 42 42 H 1.09002 * 109.46840 * 59.99787 * 16 15 14 43 43 H 0.96997 * 120.00026 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6358 -0.1494 2.6096 6 6 1.0098 -1.4539 2.1124 7 7 2.0183 -0.6907 -1.1961 8 6 1.6643 -2.0933 -1.4279 9 6 2.7931 -0.0358 -2.0834 10 8 3.0328 1.1433 -1.9254 11 6 3.3572 -0.7616 -3.2618 12 8 3.0321 -1.9103 -3.4792 13 7 4.2269 -0.1404 -4.0828 14 6 4.7794 -0.8518 -5.2382 15 6 5.7320 0.0730 -5.9986 16 6 6.3086 -0.6697 -7.2057 17 6 7.2474 0.2410 -7.9543 18 1 7.4156 1.2488 -7.6044 19 6 7.8914 -0.2125 -9.0859 20 7 8.7103 0.5824 -9.7395 21 14 7.6009 -1.9559 -9.6907 22 1 6.4577 -1.9670 -10.6384 23 1 8.8199 -2.4504 -10.3796 24 1 7.2942 -2.8361 -8.5347 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.0323 -1.1644 1.1644 29 1 2.3620 -0.2164 3.4196 30 1 1.0068 0.7408 2.6146 31 1 1.3242 -2.3792 2.5953 32 1 -0.0309 -1.4219 1.7898 33 1 0.7982 -2.1452 -2.0876 34 1 2.5057 -2.6084 -1.8916 35 1 1.4260 -2.5698 -0.4770 36 1 4.4865 0.7780 -3.9090 37 1 5.3229 -1.7325 -4.8966 38 1 3.9678 -1.1587 -5.8979 39 1 5.1881 0.9537 -6.3402 40 1 6.5436 0.3804 -5.3392 41 1 6.8524 -1.5505 -6.8645 42 1 5.4967 -0.9767 -7.8650 43 1 9.1637 0.2632 -10.5354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326279945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -43.904399 kcal Electronic energy + Delta-G solvation = -21863.156509 eV Core-core repulsion = 18523.585462 eV Total energy + Delta-G solvation = -3339.571047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98587 -39.18777 -38.01562 -36.12609 -35.09658 -33.32131 -31.48539 -30.86667 -27.75083 -27.17883 -25.74033 -23.95025 -22.79918 -22.27407 -20.83971 -20.02876 -19.28055 -17.79106 -17.32438 -16.72268 -16.54608 -16.28390 -15.70895 -15.27448 -14.70037 -14.61252 -14.14749 -13.88693 -13.71647 -13.39644 -13.15814 -12.76274 -12.61329 -12.50108 -12.27548 -12.08852 -11.96551 -11.83434 -11.50669 -11.32072 -11.11744 -10.92384 -10.89702 -10.38047 -10.15118 -9.94886 -9.77155 -9.33280 -9.24170 -9.15468 -8.91094 -8.56731 -6.07010 -4.06041 1.37529 2.19698 3.14304 3.30036 3.32766 3.37729 3.41041 3.47602 4.22481 4.33310 4.43069 4.47063 4.54418 4.64954 4.88343 4.92643 5.10120 5.22224 5.26639 5.34025 5.40433 5.43135 5.44291 5.55795 5.56551 5.69388 5.70174 5.77675 5.80867 5.92445 6.12375 6.23887 6.38361 6.56366 6.73461 6.83248 7.19241 7.26229 7.32841 7.66413 7.74336 7.99630 8.49408 8.97114 9.54761 11.06218 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043371 B = 0.002601 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.432254 B =10760.871295 C =11046.194604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 H 0.107 0.893 4 C -0.166 4.166 5 C -0.170 4.170 6 C -0.183 4.183 7 N -0.581 5.581 8 C 0.065 3.935 9 C 0.507 3.493 10 O -0.523 6.523 11 C 0.502 3.498 12 O -0.521 6.521 13 N -0.691 5.691 14 C 0.112 3.888 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.470 -4.367 23.726 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.060 3.940 3 H 0.125 0.875 4 C -0.185 4.185 5 C -0.208 4.208 6 C -0.220 4.220 7 N -0.315 5.315 8 C -0.077 4.077 9 C 0.290 3.710 10 O -0.399 6.399 11 C 0.282 3.718 12 O -0.399 6.399 13 N -0.343 5.343 14 C -0.010 4.010 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.442 -4.557 23.466 29.592 hybrid contribution 0.058 -0.512 -0.349 0.622 sum -17.384 -5.069 23.117 29.365 Atomic orbital electron populations 1.22244 0.94445 1.02742 1.02691 1.20665 0.94102 0.97386 0.81864 0.87482 1.22657 1.00083 1.04414 0.91343 1.22957 1.03709 0.97654 0.96457 1.23205 0.98910 0.96219 1.03653 1.47743 1.48693 1.13541 1.21483 1.22368 1.03657 0.80123 1.01545 1.20345 0.79622 0.87019 0.84060 1.90751 1.58858 1.15172 1.75074 1.19998 0.80846 0.86789 0.84129 1.90654 1.59721 1.16957 1.72518 1.46044 1.43353 1.17892 1.26976 1.21841 0.97510 0.96168 0.85504 1.21743 0.97238 0.98266 0.98088 1.19503 0.96106 0.96458 0.92744 1.21089 1.24846 1.00363 1.09765 0.90938 1.25034 0.94669 0.97462 0.96345 1.69911 1.29255 1.36157 1.18780 0.86770 0.77746 0.85422 0.79311 1.20248 1.21370 1.18907 0.91093 0.91914 0.91573 0.87380 0.88561 0.88498 0.88812 0.87929 0.92332 0.87423 0.91459 0.75180 0.91115 0.91117 0.91817 0.91811 0.96256 0.96682 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 7.79 37.16 0.29 -0.83 16 2 C 0.16 1.43 3.03 -67.93 -0.21 1.23 16 3 H 0.11 1.11 6.90 -51.93 -0.36 0.75 16 4 C -0.17 -1.23 5.00 -90.58 -0.45 -1.68 16 5 C -0.17 -1.01 9.89 -26.73 -0.26 -1.27 16 6 C -0.18 -1.04 9.43 -26.69 -0.25 -1.29 16 7 N -0.58 -6.21 2.76 -174.44 -0.48 -6.69 16 8 C 0.06 0.61 8.57 59.85 0.51 1.12 16 9 C 0.51 6.75 7.73 -11.58 -0.09 6.67 16 10 O -0.52 -7.91 15.82 5.49 0.09 -7.83 16 11 C 0.50 7.21 7.77 -11.59 -0.09 7.12 16 12 O -0.52 -8.08 13.14 5.50 0.07 -8.00 16 13 N -0.69 -9.92 5.55 -60.73 -0.34 -10.26 16 14 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 15 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 16 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 21 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 25 H 0.07 0.38 7.07 -51.93 -0.37 0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.40 6.50 -51.92 -0.34 0.07 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.51 7.61 -51.93 -0.40 0.12 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.51 5.85 -51.93 -0.30 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 1.20 5.36 -51.93 -0.28 0.92 16 35 H 0.07 0.49 7.17 -51.93 -0.37 0.12 16 36 H 0.41 5.51 7.96 -40.82 -0.32 5.19 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -31.64 347.56 -7.47 -39.11 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.90 Total: 1.45 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.26 Total: -2.97 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.05 Total: -43.87 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.16 Total: -15.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.64 -7.47 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326279945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.790 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds