Wall clock time and date at job start Tue Mar 31 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47151 * 2 1 4 4 C 1.53003 * 109.47331 * 239.99715 * 2 1 3 5 5 C 1.53006 * 117.49838 * 128.62236 * 4 2 1 6 6 C 1.53001 * 117.49826 * 59.99991 * 4 2 1 7 7 N 1.46502 * 109.47100 * 119.99996 * 2 1 3 8 8 C 1.46490 * 120.00369 * 59.99803 * 7 2 1 9 9 C 1.34777 * 119.99558 * 240.00017 * 7 2 1 10 10 O 1.21351 * 120.00148 * 5.35422 * 9 7 2 11 11 C 1.49447 * 120.00040 * 185.35277 * 9 7 2 12 12 O 1.21356 * 120.00012 * 5.97245 * 11 9 7 13 13 N 1.34776 * 120.00393 * 185.97379 * 11 9 7 14 14 C 1.46501 * 120.00096 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47268 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47422 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47573 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99680 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00558 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99786 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46938 * 89.99740 * 21 19 17 23 23 H 1.48492 * 109.47222 * 209.99698 * 21 19 17 24 24 H 1.48503 * 109.47200 * 330.00115 * 21 19 17 25 25 H 1.09000 * 109.47143 * 60.00127 * 1 2 3 26 26 H 1.08993 * 109.47394 * 300.00182 * 1 2 3 27 27 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08993 * 115.55033 * 274.33021 * 4 2 1 29 29 H 1.09003 * 117.49868 * 359.97438 * 5 4 2 30 30 H 1.08998 * 117.49838 * 145.02391 * 5 4 2 31 31 H 1.08993 * 117.49980 * 214.98251 * 6 4 2 32 32 H 1.09003 * 117.49832 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.47281 * 95.25629 * 8 7 2 34 34 H 1.08997 * 109.47446 * 215.25704 * 8 7 2 35 35 H 1.09003 * 109.46957 * 335.25866 * 8 7 2 36 36 H 0.96994 * 119.99940 * 359.97438 * 13 11 9 37 37 H 1.09006 * 109.46667 * 299.99981 * 14 13 11 38 38 H 1.08999 * 109.47426 * 59.99598 * 14 13 11 39 39 H 1.09011 * 109.46746 * 299.99830 * 15 14 13 40 40 H 1.08999 * 109.47521 * 59.99294 * 15 14 13 41 41 H 1.09004 * 109.47200 * 299.99347 * 16 15 14 42 42 H 1.08999 * 109.47432 * 59.99138 * 16 15 14 43 43 H 0.96999 * 119.99983 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0742 0.0051 -2.1117 6 6 1.6358 -0.1496 -2.6096 7 7 2.0183 -0.6906 1.1962 8 6 1.6644 -2.0931 1.4281 9 6 2.7931 -0.0355 2.0833 10 8 3.0064 1.1508 1.9428 11 6 3.3896 -0.7701 3.2400 12 8 3.2672 -1.9747 3.3222 13 7 4.0636 -0.0949 4.1920 14 6 4.6488 -0.8152 5.3256 15 6 5.3522 0.1781 6.2527 16 6 5.9639 -0.5741 7.4362 17 6 6.6573 0.4041 8.3491 18 1 6.6616 1.4571 8.1088 19 6 7.2870 -0.0452 9.4904 20 7 7.2822 -1.3274 9.7827 21 14 8.1471 1.1674 10.6215 22 1 7.1873 1.6578 11.6431 23 1 9.2859 0.4936 11.2954 24 1 8.6517 2.3148 9.8252 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.1267 -1.8045 -1.1641 29 1 3.3909 0.9971 -1.7893 30 1 3.8416 -0.6002 -2.5941 31 1 1.4569 -0.8567 -3.4196 32 1 1.0068 0.7406 -2.6146 33 1 2.4616 -2.7356 1.0541 34 1 1.5323 -2.2626 2.4967 35 1 0.7360 -2.3246 0.9060 36 1 4.1618 0.8678 4.1263 37 1 3.8604 -1.3292 5.8755 38 1 5.3709 -1.5446 4.9590 39 1 6.1406 0.6925 5.7030 40 1 4.6297 0.9073 6.6193 41 1 5.1759 -1.0888 7.9861 42 1 6.6864 -1.3031 7.0693 43 1 7.7249 -1.6434 10.5858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326279947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:47 Heat of formation + Delta-G solvation = -53.502749 kcal Electronic energy + Delta-G solvation = -21809.415866 eV Core-core repulsion = 18469.428603 eV Total energy + Delta-G solvation = -3339.987263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89796 -38.99907 -37.82402 -36.05451 -35.11299 -33.31852 -31.24237 -31.08976 -27.42184 -27.05894 -25.40391 -23.83696 -22.63473 -22.39064 -20.80686 -20.18609 -19.52685 -17.72203 -17.42476 -16.39860 -16.28237 -16.04952 -15.33772 -15.07715 -14.74850 -14.51257 -14.39460 -13.85259 -13.77545 -13.34738 -12.99322 -12.71070 -12.55083 -12.37167 -12.29594 -11.87413 -11.79615 -11.77526 -11.46267 -11.18741 -10.91440 -10.81524 -10.75520 -10.60167 -10.41256 -9.90205 -9.66424 -9.28164 -9.12196 -9.07613 -8.86994 -8.38211 -6.03005 -4.05937 1.43602 2.25838 3.20579 3.30952 3.34657 3.37393 3.40662 3.56509 4.19826 4.41910 4.45885 4.52565 4.60760 4.79436 4.89436 4.97380 5.07820 5.25292 5.31384 5.33005 5.44904 5.53136 5.54018 5.59911 5.69309 5.72969 5.76094 5.76366 5.90998 6.08093 6.16256 6.31611 6.54150 6.70848 6.87473 6.95199 7.33577 7.61415 7.72200 7.73123 7.95419 8.07325 8.36767 9.00560 9.58414 11.08293 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040973 B = 0.002513 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.218461 B =11138.707709 C =11366.250387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.163 3.837 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.176 4.176 6 C -0.170 4.170 7 N -0.583 5.583 8 C 0.077 3.923 9 C 0.509 3.491 10 O -0.524 6.524 11 C 0.500 3.500 12 O -0.521 6.521 13 N -0.692 5.692 14 C 0.114 3.886 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 0.591 -23.354 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.121 0.879 4 C -0.186 4.186 5 C -0.213 4.213 6 C -0.208 4.208 7 N -0.316 5.316 8 C -0.066 4.066 9 C 0.291 3.709 10 O -0.400 6.400 11 C 0.280 3.720 12 O -0.398 6.398 13 N -0.343 5.343 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.882 0.221 -23.207 27.043 hybrid contribution 0.603 0.875 0.620 1.231 sum -13.279 1.096 -22.586 26.223 Atomic orbital electron populations 1.22109 0.94090 1.02766 1.02686 1.20730 0.94276 0.97139 0.81843 0.87870 1.22614 1.04834 0.99866 0.91324 1.23055 0.92527 1.02242 1.03499 1.22940 0.98321 1.03198 0.96328 1.47700 1.48836 1.13551 1.21523 1.22135 1.00297 0.79811 1.04316 1.20391 0.79554 0.87044 0.83874 1.90735 1.59557 1.14716 1.74977 1.19969 0.80677 0.87628 0.83714 1.90724 1.58442 1.13757 1.76878 1.46084 1.52650 1.12463 1.23146 1.21832 0.97575 0.95940 0.85411 1.21925 0.98953 0.97796 0.97394 1.19029 0.95782 0.95566 0.90935 1.21202 1.34109 0.93878 1.06879 0.92579 1.25028 0.96387 0.95166 0.97897 1.69962 1.44028 1.13274 1.26057 0.86569 0.79243 0.81177 0.80869 1.20645 1.21210 1.19864 0.91045 0.91953 0.91845 0.87286 0.88481 0.88695 0.88561 0.88528 0.91950 0.88728 0.91497 0.75386 0.91118 0.91130 0.92444 0.92453 0.96213 0.96202 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.02 37.16 0.34 -0.78 16 2 C 0.16 1.48 2.86 -67.93 -0.19 1.29 16 3 H 0.10 1.10 6.67 -51.93 -0.35 0.75 16 4 C -0.17 -1.30 5.22 -90.61 -0.47 -1.77 16 5 C -0.18 -1.35 10.18 -26.73 -0.27 -1.62 16 6 C -0.17 -1.05 9.73 -26.73 -0.26 -1.31 16 7 N -0.58 -6.45 2.76 -174.45 -0.48 -6.93 16 8 C 0.08 0.73 8.15 59.84 0.49 1.22 16 9 C 0.51 7.03 7.73 -11.59 -0.09 6.94 16 10 O -0.52 -8.10 15.83 5.50 0.09 -8.02 16 11 C 0.50 7.56 7.70 -11.59 -0.09 7.47 16 12 O -0.52 -8.56 13.38 5.49 0.07 -8.49 16 13 N -0.69 -10.50 5.55 -60.73 -0.34 -10.83 16 14 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 15 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 16 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.07 0.40 7.29 -51.93 -0.38 0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.40 6.67 -51.93 -0.35 0.05 16 28 H 0.11 0.84 7.49 -51.93 -0.39 0.45 16 29 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.53 7.61 -51.93 -0.40 0.13 16 33 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 35 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 36 H 0.41 5.75 7.96 -40.82 -0.32 5.42 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.30 354.30 -7.88 -39.18 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.01 Total: 1.24 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.27 Total: -2.03 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.08 Total: -43.72 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.16 Total: -16.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.30 -7.88 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326279947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.319 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds