Wall clock time and date at job start Tue Mar 31 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.64308 * 2 1 4 4 C 1.54331 * 110.72214 * 236.86343 * 2 1 3 5 5 N 1.47314 * 107.11913 * 219.57202 * 4 2 1 6 6 C 1.34777 * 125.61357 * 178.81787 * 5 4 2 7 7 O 1.21358 * 120.00073 * 179.86242 * 6 5 4 8 8 C 1.49444 * 120.00101 * 359.85705 * 6 5 4 9 9 O 1.21355 * 120.00302 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00050 * 180.02562 * 8 6 5 11 11 C 1.46504 * 120.00152 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47232 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46875 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46904 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00387 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00149 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99921 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00352 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 90.00032 * 18 16 14 20 20 H 1.48496 * 109.47311 * 210.00419 * 18 16 14 21 21 H 1.48506 * 109.46981 * 330.00506 * 18 16 14 22 22 C 1.47425 * 108.73829 * 358.69410 * 5 4 2 23 23 C 1.54909 * 104.82922 * 24.28564 * 22 5 4 24 24 H 1.09000 * 111.03827 * 81.08103 * 23 22 5 25 25 C 1.53005 * 111.00386 * 204.91296 * 23 22 5 26 26 H 1.09002 * 109.47153 * 299.29519 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29710 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29691 * 1 2 3 29 29 H 1.09000 * 109.87776 * 338.85770 * 4 2 1 30 30 H 1.08992 * 109.88225 * 100.02330 * 4 2 1 31 31 H 0.97001 * 120.00330 * 359.97438 * 10 8 6 32 32 H 1.09000 * 109.47202 * 299.99666 * 11 10 8 33 33 H 1.09002 * 109.47090 * 59.99559 * 11 10 8 34 34 H 1.08994 * 109.46938 * 299.99789 * 12 11 10 35 35 H 1.08997 * 109.46885 * 60.00434 * 12 11 10 36 36 H 1.09000 * 109.47301 * 299.99935 * 13 12 11 37 37 H 1.08993 * 109.47481 * 59.99839 * 13 12 11 38 38 H 0.96992 * 120.00248 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.36887 * 265.44763 * 22 5 4 40 40 H 1.09001 * 110.46082 * 143.16716 * 22 5 4 41 41 H 1.09003 * 109.47026 * 172.19677 * 25 23 22 42 42 H 1.08996 * 109.47284 * 292.19997 * 25 23 22 43 43 H 1.09002 * 109.46505 * 52.19789 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2087 5 7 3.2445 -1.5519 -0.7365 6 6 3.9915 -2.3870 -1.4856 7 8 4.9375 -2.9640 -0.9907 8 6 3.6548 -2.6025 -2.9256 9 8 2.7091 -2.0252 -3.4206 10 7 4.4015 -3.4380 -3.6745 11 6 4.0718 -3.6488 -5.0863 12 6 5.0677 -4.6345 -5.7009 13 6 4.7237 -4.8541 -7.1754 14 6 5.7042 -5.8254 -7.7807 15 1 6.4935 -6.2445 -7.1742 16 6 5.5930 -6.1799 -9.1085 17 7 4.6316 -5.6700 -9.8470 18 14 6.8079 -7.3844 -9.8585 19 1 6.2929 -8.7685 -9.7029 20 1 6.9803 -7.0796 -11.3016 21 1 8.1166 -7.2626 -9.1672 22 6 3.4633 -1.2486 0.6895 23 6 2.0790 -0.7934 1.2150 24 1 1.4449 -1.6508 1.4406 25 6 2.2278 0.1120 2.4394 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8836 29 1 1.3130 -1.4731 -1.5801 30 1 2.3741 -0.0989 -1.9979 31 1 5.1577 -3.8992 -3.2790 32 1 3.0629 -4.0533 -5.1673 33 1 4.1262 -2.6988 -5.6179 34 1 6.0764 -4.2297 -5.6200 35 1 5.0136 -5.5845 -5.1694 36 1 3.7148 -5.2587 -7.2568 37 1 4.7780 -3.9040 -7.7067 38 1 4.5536 -5.9191 -10.7811 39 1 4.1932 -0.4465 0.7991 40 1 3.7969 -2.1394 1.2217 41 1 1.2556 0.5280 2.7040 42 1 2.6143 -0.4694 3.2764 43 1 2.9195 0.9225 2.2098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326456844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:18 Heat of formation + Delta-G solvation = -113.025792 kcal Electronic energy + Delta-G solvation = -21770.405650 eV Core-core repulsion = 18427.837274 eV Total energy + Delta-G solvation = -3342.568376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93609 -40.17068 -38.98641 -37.14782 -35.31749 -34.36693 -33.05385 -32.25606 -29.18552 -28.08956 -27.34944 -25.74055 -24.02437 -22.53013 -22.38918 -21.11252 -20.83441 -18.92565 -18.48460 -18.08481 -17.49430 -16.85746 -16.62994 -16.38786 -16.06396 -15.37796 -15.18286 -15.05211 -14.68583 -14.31329 -14.18139 -13.87825 -13.78891 -13.64406 -13.50045 -13.10354 -12.92233 -12.76710 -12.64412 -12.52577 -12.48664 -12.41378 -11.79607 -11.72082 -11.67109 -11.55473 -11.29880 -11.23849 -10.65810 -10.55607 -10.34751 -9.91159 -8.20295 -6.31236 0.25079 1.16155 1.41555 1.42467 1.53622 2.03293 2.36600 2.43447 3.13505 3.19892 3.49239 3.53616 3.79003 4.06200 4.16023 4.21055 4.29703 4.49295 4.50449 4.53690 4.63263 4.67669 4.77080 4.83295 4.84709 4.89626 4.98948 5.01762 5.12322 5.13365 5.21102 5.21564 5.22345 5.44251 5.49526 5.50516 5.69298 5.83348 5.92484 6.14046 6.22773 6.56706 6.84990 6.85813 7.38059 8.91652 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045583 B = 0.002498 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.122008 B =11204.057263 C =11722.408172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.099 0.901 4 C 0.106 3.894 5 N -0.590 5.590 6 C 0.520 3.480 7 O -0.546 6.546 8 C 0.502 3.498 9 O -0.539 6.539 10 N -0.687 5.687 11 C 0.129 3.871 12 C -0.106 4.106 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.100 3.900 23 C -0.093 4.093 24 H 0.087 0.913 25 C -0.136 4.136 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.066 0.934 36 H -0.004 1.004 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 13.071 25.669 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.016 4.016 5 N -0.323 5.323 6 C 0.303 3.697 7 O -0.425 6.425 8 C 0.282 3.718 9 O -0.416 6.416 10 N -0.340 5.340 11 C 0.006 3.994 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.021 4.021 23 C -0.112 4.112 24 H 0.106 0.894 25 C -0.193 4.193 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.885 13.126 25.348 29.364 hybrid contribution 0.813 -0.937 -0.952 1.564 sum -6.073 12.189 24.396 27.940 Atomic orbital electron populations 1.21740 0.92511 1.02313 1.03090 1.22389 0.97411 0.99495 0.92144 0.88252 1.22492 0.86485 0.94795 0.97812 1.48458 1.29754 1.41799 1.12277 1.19754 0.82903 0.80220 0.86851 1.90747 1.29141 1.49000 1.73566 1.20191 0.83405 0.80699 0.87476 1.90735 1.28851 1.48302 1.73742 1.45881 1.32355 1.44281 1.11447 1.21475 0.99458 0.99824 0.78626 1.21640 0.98082 0.97961 0.96685 1.18928 0.95687 0.95464 0.91156 1.21673 1.14132 1.26366 0.95851 0.91810 1.25994 0.97610 0.98401 0.97993 1.70097 1.33893 1.45431 1.07910 0.85431 0.79291 0.78843 0.77382 1.19826 1.20898 1.18675 1.22711 0.99341 1.01563 0.78439 1.22453 0.93889 0.99322 0.95558 0.89449 1.21681 1.03165 0.98896 0.95571 0.90293 0.92826 0.92099 0.91213 0.91230 0.74467 0.91714 0.91718 0.91510 0.91493 0.98519 0.98497 0.92763 0.89769 0.90448 0.90679 0.91671 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.14 71.98 0.66 -0.67 16 2 C -0.10 -1.11 3.01 -9.61 -0.03 -1.14 16 3 H 0.10 0.95 8.04 -2.39 -0.02 0.93 16 4 C 0.11 2.07 5.10 86.68 0.44 2.51 16 5 N -0.59 -13.40 3.33 -812.62 -2.71 -16.11 16 6 C 0.52 14.90 7.91 87.27 0.69 15.59 16 7 O -0.55 -17.49 16.73 -3.27 -0.05 -17.54 16 8 C 0.50 15.70 7.86 87.27 0.69 16.39 16 9 O -0.54 -18.54 14.13 -3.26 -0.05 -18.59 16 10 N -0.69 -21.18 5.55 -464.40 -2.58 -23.75 16 11 C 0.13 4.52 5.67 86.38 0.49 5.01 16 12 C -0.11 -4.14 5.27 30.59 0.16 -3.98 16 13 C 0.03 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 18 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 C 0.10 1.63 6.37 86.86 0.55 2.19 16 23 C -0.09 -1.00 3.09 -9.40 -0.03 -1.03 16 24 H 0.09 0.97 8.05 -2.39 -0.02 0.95 16 25 C -0.14 -0.85 9.31 71.98 0.67 -0.18 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.07 1.54 7.23 -2.39 -0.02 1.52 16 30 H 0.07 1.50 7.71 -2.39 -0.02 1.48 16 31 H 0.42 11.71 7.94 -92.71 -0.74 10.98 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.08 1.22 7.98 -2.39 -0.02 1.20 16 40 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 41 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 43 H 0.06 0.37 8.07 -2.39 -0.02 0.36 16 Total: -1.00 -68.52 354.81 2.31 -66.21 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.25 Total: 13.84 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.14 Total: 6.26 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -5.00 Total: -96.33 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.52 2.31 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326456844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.811 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds