Wall clock time and date at job start Tue Mar 31 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.88732 * 2 1 4 4 C 1.55129 * 110.90919 * 124.09773 * 2 1 3 5 5 N 1.47422 * 104.72635 * 155.27456 * 4 2 1 6 6 C 1.34773 * 125.65011 * 155.82003 * 5 4 2 7 7 O 1.21348 * 120.00449 * 179.69612 * 6 5 4 8 8 C 1.49456 * 119.99966 * 359.68923 * 6 5 4 9 9 O 1.21348 * 119.99582 * 0.02562 * 8 6 5 10 10 N 1.34773 * 119.99965 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50709 * 109.47079 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46949 * 59.99946 * 18 16 14 20 20 H 1.48496 * 109.47648 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47026 * 300.00228 * 18 16 14 22 22 C 1.47026 * 108.70383 * 335.55302 * 5 4 2 23 23 C 1.54324 * 107.26889 * 1.28823 * 22 5 4 24 24 H 1.08998 * 110.72038 * 140.73160 * 23 22 5 25 25 C 1.52999 * 110.71979 * 263.83070 * 23 22 5 26 26 H 1.08996 * 109.46824 * 183.87787 * 1 2 3 27 27 H 1.08994 * 109.47153 * 303.87768 * 1 2 3 28 28 H 1.08999 * 109.46896 * 63.87969 * 1 2 3 29 29 H 1.09006 * 110.49733 * 36.43027 * 4 2 1 30 30 H 1.09002 * 110.34362 * 274.04061 * 4 2 1 31 31 H 0.97005 * 120.00161 * 359.72226 * 10 8 6 32 32 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 33 33 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 34 34 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 35 35 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 36 36 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 37 37 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 38 38 H 0.96994 * 120.00439 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88342 * 120.70039 * 22 5 4 40 40 H 1.08999 * 109.88254 * 241.87087 * 22 5 4 41 41 H 1.09001 * 109.47556 * 58.54250 * 25 23 22 42 42 H 1.09001 * 109.47125 * 178.54954 * 25 23 22 43 43 H 1.09008 * 109.46784 * 298.54391 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2434 0.7728 6 6 4.4476 -1.5623 1.5934 7 8 5.5133 -1.9109 1.1292 8 6 4.2669 -1.4864 3.0750 9 8 3.2012 -1.1381 3.5391 10 7 5.2876 -1.8048 3.8955 11 6 5.1102 -1.7310 5.3479 12 6 6.4085 -2.1474 6.0421 13 6 6.2235 -2.0697 7.5588 14 6 7.5025 -2.4793 8.2426 15 1 8.3615 -2.7660 7.6541 16 6 7.5763 -2.4871 9.6193 17 7 6.5304 -2.1376 10.3359 18 14 9.1614 -2.9955 10.4669 19 1 10.2581 -2.0833 10.0540 20 1 8.9819 -2.9200 11.9390 21 1 9.5043 -4.3881 10.0813 22 6 3.4675 -1.2739 -0.6966 23 6 2.0862 -0.8074 -1.2026 24 1 2.1921 -0.1716 -2.0816 25 6 1.1887 -2.0078 -1.5100 26 1 -0.3633 -1.0253 0.0695 27 1 -0.3633 0.5728 0.8531 28 1 -0.3633 0.4524 -0.9227 29 1 1.4524 -1.6787 1.3981 30 1 2.1516 -0.1810 2.0860 31 1 6.1383 -2.0871 3.5245 32 1 4.8581 -0.7092 5.6316 33 1 4.3054 -2.4010 5.6502 34 1 6.6606 -3.1692 5.7583 35 1 7.2133 -1.4773 5.7398 36 1 5.9716 -1.0478 7.8423 37 1 5.4187 -2.7395 7.8615 38 1 6.5822 -2.1434 11.3045 39 1 4.2426 -0.5993 -1.0602 40 1 3.6651 -2.2890 -1.0410 41 1 1.0717 -2.6137 -0.6115 42 1 0.2116 -1.6556 -1.8406 43 1 1.6435 -2.6093 -2.2972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326456845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:21 Heat of formation + Delta-G solvation = -88.390367 kcal Electronic energy + Delta-G solvation = -21880.833873 eV Core-core repulsion = 18539.333770 eV Total energy + Delta-G solvation = -3341.500104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91300 -39.24317 -37.97718 -35.66149 -33.75556 -33.21786 -31.24996 -31.23545 -27.87846 -26.90257 -26.64653 -24.56700 -23.02265 -21.71570 -20.77392 -19.73008 -19.60117 -17.68254 -17.17484 -16.54867 -16.33820 -15.82523 -15.24833 -15.01515 -14.61002 -14.46417 -14.27905 -14.01710 -13.65112 -13.28860 -13.12648 -13.00151 -12.35634 -12.33241 -12.30181 -11.97730 -11.88732 -11.78968 -11.53743 -11.21953 -10.91676 -10.89004 -10.77616 -10.74818 -10.62568 -9.89797 -9.70084 -9.32910 -9.13927 -9.05382 -8.88906 -8.37695 -6.02627 -4.05728 1.44801 2.25760 3.23500 3.32597 3.37076 3.39260 3.49444 4.02957 4.15792 4.39271 4.43842 4.50300 4.73367 4.92770 5.01871 5.07673 5.24619 5.33230 5.35731 5.38368 5.45053 5.50724 5.59498 5.59894 5.66553 5.69306 5.76864 5.82273 5.93715 6.00556 6.08084 6.30598 6.54243 6.71681 6.95219 7.00556 7.31942 7.61393 7.72232 7.73322 7.95639 8.07481 8.36914 9.00558 9.58589 11.08653 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043849 B = 0.002538 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.397402 B =11027.651571 C =11497.727075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.593 5.593 6 C 0.520 3.480 7 O -0.523 6.523 8 C 0.503 3.497 9 O -0.522 6.522 10 N -0.691 5.691 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.109 3.891 23 C -0.102 4.102 24 H 0.091 0.909 25 C -0.146 4.146 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 3.447 -24.509 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.327 5.327 6 C 0.303 3.697 7 O -0.399 6.399 8 C 0.283 3.717 9 O -0.399 6.399 10 N -0.343 5.343 11 C -0.007 4.007 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.013 4.013 23 C -0.121 4.121 24 H 0.109 0.891 25 C -0.203 4.203 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.233 3.502 -24.152 27.299 hybrid contribution 1.286 -0.421 0.384 1.407 sum -10.947 3.080 -23.768 26.348 Atomic orbital electron populations 1.21737 0.93512 1.02538 1.02149 1.22515 0.96603 0.99247 0.94065 0.89587 1.22822 0.81685 0.99269 0.98354 1.48228 1.12716 1.65018 1.06752 1.20046 0.83311 0.78631 0.87687 1.90759 1.25570 1.46229 1.77385 1.19905 0.85041 0.79637 0.87097 1.90704 1.25847 1.46245 1.77151 1.46069 1.15047 1.65234 1.07964 1.21839 1.00664 1.02287 0.75947 1.21928 0.93920 1.00559 0.99674 1.19025 0.97475 0.97669 0.87102 1.21167 0.98157 1.45438 0.91392 0.92624 1.25023 0.96436 0.95339 0.97638 1.69951 1.29320 1.48129 1.05952 0.86629 0.83710 0.79158 0.78330 1.20217 1.21275 1.20221 1.22148 0.97817 1.02118 0.79254 1.22279 0.93819 0.97610 0.98354 0.89107 1.21877 0.99530 0.97110 1.01785 0.91885 0.92080 0.92126 0.90811 0.87849 0.75337 0.91105 0.91107 0.92434 0.92431 0.96205 0.96203 0.92854 0.90938 0.90862 0.92267 0.91766 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.28 37.16 0.31 -0.47 16 2 C -0.11 -0.73 3.52 -88.35 -0.31 -1.04 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.10 1.00 5.22 -2.41 -0.01 0.99 16 5 N -0.59 -6.88 3.32 -170.88 -0.57 -7.45 16 6 C 0.52 7.48 7.91 -11.58 -0.09 7.39 16 7 O -0.52 -8.48 16.80 5.50 0.09 -8.39 16 8 C 0.50 7.81 7.86 -11.58 -0.09 7.71 16 9 O -0.52 -8.80 13.77 5.50 0.08 -8.72 16 10 N -0.69 -10.67 5.55 -60.73 -0.34 -11.01 16 11 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 12 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.11 0.97 6.45 -3.06 -0.02 0.95 16 23 C -0.10 -0.64 3.47 -88.78 -0.31 -0.95 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 C -0.15 -0.81 7.86 37.16 0.29 -0.52 16 26 H 0.06 0.34 6.71 -51.93 -0.35 -0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.73 7.54 -51.93 -0.39 0.33 16 30 H 0.10 1.21 6.14 -51.93 -0.32 0.89 16 31 H 0.41 5.86 7.95 -40.82 -0.32 5.53 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 41 H 0.06 0.39 7.30 -51.93 -0.38 0.01 16 42 H 0.06 0.29 7.10 -51.93 -0.37 -0.08 16 43 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.73 348.98 -7.86 -39.60 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.15 Total: -0.37 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.95 Total: 0.57 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.17 Total: -44.47 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.17 Total: -17.11 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.73 -7.86 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326456845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.792 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds