Wall clock time and date at job start Tue Mar 31 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.88732 * 2 1 4 4 C 1.55129 * 110.90919 * 124.09773 * 2 1 3 5 5 N 1.47422 * 104.72635 * 155.27456 * 4 2 1 6 6 C 1.34773 * 125.65011 * 155.82003 * 5 4 2 7 7 O 1.21348 * 120.00449 * 179.69612 * 6 5 4 8 8 C 1.49456 * 119.99966 * 359.68923 * 6 5 4 9 9 O 1.21348 * 119.99582 * 0.02562 * 8 6 5 10 10 N 1.34773 * 119.99965 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50709 * 109.47079 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46949 * 59.99946 * 18 16 14 20 20 H 1.48496 * 109.47648 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47026 * 300.00228 * 18 16 14 22 22 C 1.47026 * 108.70383 * 335.55302 * 5 4 2 23 23 C 1.54324 * 107.26889 * 1.28823 * 22 5 4 24 24 H 1.08998 * 110.72038 * 140.73160 * 23 22 5 25 25 C 1.52999 * 110.71979 * 263.83070 * 23 22 5 26 26 H 1.08996 * 109.46824 * 183.87787 * 1 2 3 27 27 H 1.08994 * 109.47153 * 303.87768 * 1 2 3 28 28 H 1.08999 * 109.46896 * 63.87969 * 1 2 3 29 29 H 1.09006 * 110.49733 * 36.43027 * 4 2 1 30 30 H 1.09002 * 110.34362 * 274.04061 * 4 2 1 31 31 H 0.97005 * 120.00161 * 359.72226 * 10 8 6 32 32 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 33 33 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 34 34 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 35 35 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 36 36 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 37 37 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 38 38 H 0.96994 * 120.00439 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88342 * 120.70039 * 22 5 4 40 40 H 1.08999 * 109.88254 * 241.87087 * 22 5 4 41 41 H 1.09001 * 109.47556 * 58.54250 * 25 23 22 42 42 H 1.09001 * 109.47125 * 178.54954 * 25 23 22 43 43 H 1.09008 * 109.46784 * 298.54391 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2434 0.7728 6 6 4.4476 -1.5623 1.5934 7 8 5.5133 -1.9109 1.1292 8 6 4.2669 -1.4864 3.0750 9 8 3.2012 -1.1381 3.5391 10 7 5.2876 -1.8048 3.8955 11 6 5.1102 -1.7310 5.3479 12 6 6.4085 -2.1474 6.0421 13 6 6.2235 -2.0697 7.5588 14 6 7.5025 -2.4793 8.2426 15 1 8.3615 -2.7660 7.6541 16 6 7.5763 -2.4871 9.6193 17 7 6.5304 -2.1376 10.3359 18 14 9.1614 -2.9955 10.4669 19 1 10.2581 -2.0833 10.0540 20 1 8.9819 -2.9200 11.9390 21 1 9.5043 -4.3881 10.0813 22 6 3.4675 -1.2739 -0.6966 23 6 2.0862 -0.8074 -1.2026 24 1 2.1921 -0.1716 -2.0816 25 6 1.1887 -2.0078 -1.5100 26 1 -0.3633 -1.0253 0.0695 27 1 -0.3633 0.5728 0.8531 28 1 -0.3633 0.4524 -0.9227 29 1 1.4524 -1.6787 1.3981 30 1 2.1516 -0.1810 2.0860 31 1 6.1383 -2.0871 3.5245 32 1 4.8581 -0.7092 5.6316 33 1 4.3054 -2.4010 5.6502 34 1 6.6606 -3.1692 5.7583 35 1 7.2133 -1.4773 5.7398 36 1 5.9716 -1.0478 7.8423 37 1 5.4187 -2.7395 7.8615 38 1 6.5822 -2.1434 11.3045 39 1 4.2426 -0.5993 -1.0602 40 1 3.6651 -2.2890 -1.0410 41 1 1.0717 -2.6137 -0.6115 42 1 0.2116 -1.6556 -1.8406 43 1 1.6435 -2.6093 -2.2972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326456845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:20 Heat of formation + Delta-G solvation = -109.102609 kcal Electronic energy + Delta-G solvation = -21881.732023 eV Core-core repulsion = 18539.333770 eV Total energy + Delta-G solvation = -3342.398254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97634 -40.24461 -39.05089 -37.15679 -35.32453 -34.40173 -33.05384 -31.83214 -29.17221 -28.17216 -27.31294 -25.92587 -24.36415 -22.76806 -22.39350 -20.89114 -20.31100 -18.84943 -18.42402 -18.16448 -17.57832 -16.98270 -16.58384 -16.38597 -16.05103 -15.51818 -15.32808 -15.04007 -14.58185 -14.31287 -14.25774 -13.88512 -13.77996 -13.68731 -13.52263 -12.98891 -12.81962 -12.73635 -12.65238 -12.53328 -12.48249 -12.43916 -11.79988 -11.71098 -11.56053 -11.44961 -11.35272 -11.24367 -10.61289 -10.54880 -10.34448 -9.89764 -8.19975 -6.31080 0.25438 1.16797 1.41629 1.44259 1.52168 2.03681 2.38063 2.44361 3.13778 3.21257 3.45633 3.56499 3.86934 4.06317 4.14559 4.16237 4.26460 4.50562 4.53505 4.57977 4.61660 4.66714 4.79756 4.85894 4.89825 4.89979 4.97562 4.98821 5.12473 5.14144 5.16392 5.24096 5.30317 5.37979 5.50429 5.53545 5.69562 5.83493 5.94112 6.14842 6.22959 6.57915 6.85083 6.85874 7.38261 8.91795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043849 B = 0.002538 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.397402 B =11027.651571 C =11497.727075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.096 3.904 5 N -0.587 5.587 6 C 0.519 3.481 7 O -0.547 6.547 8 C 0.503 3.497 9 O -0.538 6.538 10 N -0.687 5.687 11 C 0.129 3.871 12 C -0.106 4.106 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.101 3.899 23 C -0.091 4.091 24 H 0.115 0.885 25 C -0.145 4.145 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 3.457 -26.444 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.320 5.320 6 C 0.302 3.698 7 O -0.425 6.425 8 C 0.284 3.716 9 O -0.416 6.416 10 N -0.339 5.339 11 C 0.006 3.994 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.020 4.020 23 C -0.109 4.109 24 H 0.133 0.867 25 C -0.202 4.202 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.129 3.517 -26.129 29.021 hybrid contribution 1.167 -0.403 0.955 1.560 sum -10.962 3.114 -25.174 27.634 Atomic orbital electron populations 1.21732 0.92130 1.02817 1.02949 1.22500 0.97597 0.98855 0.92691 0.89303 1.22933 0.81001 0.99438 0.99240 1.48386 1.12535 1.63151 1.07926 1.19737 0.83757 0.79185 0.87153 1.90744 1.26473 1.47868 1.77439 1.20187 0.84598 0.79005 0.87857 1.90703 1.26428 1.46827 1.77656 1.45889 1.15599 1.65372 1.07054 1.21480 0.99168 1.01702 0.77050 1.21641 0.95294 1.01462 0.95981 1.18923 0.95924 0.95490 0.90853 1.21649 0.99225 1.45198 0.92091 0.91816 1.25982 1.00060 0.95289 0.98583 1.70088 1.31651 1.49323 1.06280 0.85495 0.79310 0.79205 0.77003 1.19147 1.21003 1.19168 1.22431 0.99828 1.02422 0.77368 1.22302 0.91997 0.98032 0.98607 0.86740 1.21880 1.00228 0.96677 1.01388 0.91723 0.92437 0.90349 0.90764 0.89811 0.74472 0.91658 0.91697 0.91522 0.91507 0.98502 0.98508 0.92748 0.90691 0.90842 0.93623 0.90206 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.28 71.98 0.60 -0.62 16 2 C -0.10 -1.17 3.52 -9.32 -0.03 -1.20 16 3 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.10 1.84 5.22 86.93 0.45 2.30 16 5 N -0.59 -13.27 3.32 -812.92 -2.70 -15.98 16 6 C 0.52 14.83 7.91 87.27 0.69 15.52 16 7 O -0.55 -17.55 16.80 -3.24 -0.05 -17.60 16 8 C 0.50 15.64 7.86 87.27 0.69 16.32 16 9 O -0.54 -18.34 13.77 -3.24 -0.04 -18.39 16 10 N -0.69 -21.07 5.55 -464.40 -2.58 -23.65 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 C -0.11 -4.14 5.27 30.59 0.16 -3.98 16 13 C 0.03 1.33 4.97 29.85 0.15 1.48 16 14 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 17 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 18 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.10 1.65 6.45 86.73 0.56 2.21 16 23 C -0.09 -0.90 3.47 -9.60 -0.03 -0.94 16 24 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 25 C -0.14 -1.25 7.86 71.98 0.57 -0.68 16 26 H 0.06 0.56 6.71 -2.39 -0.02 0.55 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 1.43 7.54 -2.38 -0.02 1.41 16 30 H 0.08 1.98 6.14 -2.39 -0.01 1.96 16 31 H 0.42 11.68 7.95 -92.70 -0.74 10.95 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.23 7.84 -2.39 -0.02 1.21 16 41 H 0.04 0.53 7.30 -2.39 -0.02 0.51 16 42 H 0.08 0.47 7.10 -2.39 -0.02 0.45 16 43 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -68.37 348.98 2.17 -66.20 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.26 Total: 14.28 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.98 Total: 5.52 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -4.99 Total: -96.09 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -35.99 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.37 2.17 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326456845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.902 kcal (2) G-P(sol) polarization free energy of solvation -68.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds