Wall clock time and date at job start Tue Mar 31 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.88644 * 2 1 4 4 C 1.54908 * 111.00486 * 123.87428 * 2 1 3 5 5 N 1.47426 * 104.83177 * 155.12321 * 4 2 1 6 6 C 1.34780 * 125.64645 * 155.60647 * 5 4 2 7 7 O 1.21345 * 120.00306 * 0.02562 * 6 5 4 8 8 C 1.49452 * 119.99821 * 179.97438 * 6 5 4 9 9 O 1.21358 * 120.00100 * 0.02562 * 8 6 5 10 10 N 1.34771 * 120.00064 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00042 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47147 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47146 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00097 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99902 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47171 * 60.00308 * 18 16 14 20 20 H 1.48508 * 109.47124 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47258 * 300.00004 * 18 16 14 22 22 C 1.47024 * 108.70449 * 335.87274 * 5 4 2 23 23 C 1.54327 * 107.26851 * 1.05970 * 22 5 4 24 24 H 1.09005 * 110.71834 * 263.82776 * 23 22 5 25 25 C 1.52998 * 110.87070 * 140.62996 * 23 22 5 26 26 H 1.09005 * 109.47247 * 297.57555 * 1 2 3 27 27 H 1.08997 * 109.47277 * 57.58062 * 1 2 3 28 28 H 1.08998 * 109.47062 * 177.58054 * 1 2 3 29 29 H 1.09004 * 110.37002 * 36.28551 * 4 2 1 30 30 H 1.09000 * 110.37209 * 273.96299 * 4 2 1 31 31 H 0.97000 * 120.00176 * 0.02562 * 10 8 6 32 32 H 1.09008 * 109.47118 * 299.99827 * 11 10 8 33 33 H 1.09000 * 109.47531 * 60.00312 * 11 10 8 34 34 H 1.08997 * 109.47309 * 299.99640 * 12 11 10 35 35 H 1.08997 * 109.47120 * 60.00150 * 12 11 10 36 36 H 1.08997 * 109.46967 * 300.00150 * 13 12 11 37 37 H 1.09002 * 109.46698 * 59.99737 * 13 12 11 38 38 H 0.97005 * 119.99599 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.88062 * 120.47920 * 22 5 4 40 40 H 1.09000 * 109.88248 * 241.64107 * 22 5 4 41 41 H 1.09000 * 109.46749 * 306.38569 * 25 23 22 42 42 H 1.08994 * 109.47432 * 66.38558 * 25 23 22 43 43 H 1.09000 * 109.47119 * 186.38810 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8060 1.2007 5 7 3.4275 -1.2419 0.7743 6 6 4.4496 -1.5541 1.5954 7 8 4.3038 -1.4875 2.7982 8 6 5.7623 -1.9836 1.0244 9 8 5.9080 -2.0507 -0.1785 10 7 6.7843 -2.2964 1.8454 11 6 8.0712 -2.7168 1.2857 12 6 9.0505 -3.0113 2.4238 13 6 10.3944 -3.4511 1.8393 14 6 11.3592 -3.7406 2.9602 15 1 11.0451 -3.6231 3.9868 16 6 12.6427 -4.1553 2.6751 17 7 13.0254 -4.2979 1.4249 18 14 13.8388 -4.5135 4.0645 19 1 13.2932 -5.5977 4.9203 20 1 15.1435 -4.9392 3.4972 21 1 14.0308 -3.2878 4.8808 22 6 3.4683 -1.2732 -0.6951 23 6 2.0869 -0.8078 -1.2018 24 1 1.4481 -1.6635 -1.4206 25 6 2.2316 0.0864 -2.4348 26 1 -0.3634 0.4757 0.9110 27 1 -0.3633 0.5509 -0.8675 28 1 -0.3633 -1.0267 -0.0434 29 1 1.4522 -1.6701 1.4028 30 1 2.1553 -0.1712 2.0840 31 1 6.6678 -2.2431 2.8069 32 1 7.9303 -3.6163 0.6862 33 1 8.4720 -1.9209 0.6580 34 1 9.1916 -2.1123 3.0236 35 1 8.6497 -3.8075 3.0511 36 1 10.2531 -4.3503 1.2397 37 1 10.7954 -2.6552 1.2116 38 1 13.9284 -4.5900 1.2244 39 1 4.2433 -0.5985 -1.0588 40 1 3.6666 -2.2884 -1.0388 41 1 2.9172 0.9040 -2.2121 42 1 2.6236 -0.5005 -3.2654 43 1 1.2570 0.4929 -2.7052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326456846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:23 Heat of formation + Delta-G solvation = -92.267907 kcal Electronic energy + Delta-G solvation = -21770.116117 eV Core-core repulsion = 18428.447871 eV Total energy + Delta-G solvation = -3341.668246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86091 -39.15572 -37.93093 -35.64231 -33.73699 -33.20964 -31.69418 -31.23442 -27.84920 -26.80468 -26.68220 -24.27585 -22.72107 -21.60463 -20.76368 -20.51243 -19.58453 -17.78534 -17.04668 -16.43465 -16.35227 -15.71439 -15.31162 -14.84155 -14.57071 -14.46120 -14.22716 -14.08078 -13.69302 -13.30278 -13.02859 -12.98432 -12.64396 -12.30554 -12.29863 -11.98471 -11.88657 -11.78758 -11.53567 -11.18927 -11.13155 -10.89004 -10.76146 -10.73956 -10.62739 -9.89491 -9.71957 -9.33727 -9.13756 -9.06045 -8.88311 -8.37519 -6.02475 -4.05519 1.45100 2.25301 3.23888 3.32713 3.37140 3.39328 3.48292 4.03191 4.15038 4.32566 4.43763 4.50658 4.87002 4.89018 4.98078 5.06617 5.17863 5.28104 5.33362 5.34636 5.44528 5.52698 5.60311 5.62026 5.64150 5.69785 5.75739 5.80690 5.88636 6.01599 6.08530 6.29336 6.54642 6.71623 6.95520 6.99521 7.32289 7.61596 7.71901 7.73546 7.95810 8.08237 8.37139 9.00741 9.58732 11.08758 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045591 B = 0.002498 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.003298 B =11204.534170 C =11722.517593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.087 0.913 4 C 0.108 3.892 5 N -0.595 5.595 6 C 0.521 3.479 7 O -0.523 6.523 8 C 0.502 3.498 9 O -0.522 6.522 10 N -0.692 5.692 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.111 3.889 23 C -0.104 4.104 24 H 0.086 0.914 25 C -0.141 4.141 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.912 8.824 -5.464 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.105 0.895 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.304 3.696 7 O -0.399 6.399 8 C 0.282 3.718 9 O -0.398 6.398 10 N -0.344 5.344 11 C -0.007 4.007 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.012 4.012 23 C -0.123 4.123 24 H 0.104 0.896 25 C -0.199 4.199 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.619 8.719 -5.740 27.665 hybrid contribution 0.740 -0.250 1.149 1.389 sum -24.880 8.469 -4.591 26.680 Atomic orbital electron populations 1.21687 0.93435 1.02343 1.02277 1.22468 0.96392 0.99494 0.93905 0.89455 1.22430 0.82226 0.98678 0.98105 1.48223 1.11609 1.65050 1.08022 1.20072 0.84713 0.78708 0.86078 1.90757 1.82880 1.52210 1.14097 1.19902 0.85094 0.79734 0.87088 1.90744 1.82909 1.52018 1.14174 1.46058 1.12163 1.65216 1.10954 1.21834 0.80690 1.00173 0.98015 1.21929 0.97010 1.00927 0.96213 1.19026 0.89036 0.96776 0.96438 1.21164 0.96559 1.45492 0.92926 0.92621 1.25028 0.98359 0.95542 0.95534 1.69957 1.18767 1.47048 1.17558 0.86628 0.80198 0.78750 0.82235 1.20219 1.21279 1.20224 1.22312 0.97378 1.03114 0.78377 1.22398 0.95896 0.98832 0.95218 0.89550 1.21740 1.02045 0.99375 0.96708 0.92156 0.91925 0.92226 0.90830 0.89989 0.75357 0.91132 0.91129 0.92434 0.92436 0.96209 0.96210 0.92863 0.90030 0.90270 0.92232 0.91994 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.30 37.15 0.35 -0.30 16 2 C -0.10 -0.67 3.08 -88.48 -0.27 -0.94 16 3 H 0.09 0.57 8.05 -51.93 -0.42 0.16 16 4 C 0.11 0.95 6.38 -2.53 -0.02 0.94 16 5 N -0.59 -6.94 3.33 -171.02 -0.57 -7.51 16 6 C 0.52 7.52 7.91 -11.58 -0.09 7.43 16 7 O -0.52 -8.47 16.73 5.50 0.09 -8.37 16 8 C 0.50 7.85 7.86 -11.59 -0.09 7.76 16 9 O -0.52 -8.90 14.12 5.49 0.08 -8.82 16 10 N -0.69 -10.75 5.55 -60.72 -0.34 -11.09 16 11 C 0.11 2.00 5.67 -4.04 -0.02 1.98 16 12 C -0.12 -2.41 5.27 -26.73 -0.14 -2.56 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.11 1.11 5.09 -3.06 -0.02 1.09 16 23 C -0.10 -0.71 3.01 -88.79 -0.27 -0.98 16 24 H 0.09 0.53 8.02 -51.93 -0.42 0.11 16 25 C -0.14 -0.81 9.17 37.16 0.34 -0.47 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.27 8.11 -51.93 -0.42 -0.16 16 29 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 30 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 31 H 0.41 5.88 7.94 -40.82 -0.32 5.56 16 32 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 0.90 7.22 -51.93 -0.37 0.52 16 40 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 41 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -31.85 354.79 -7.83 -39.69 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.38 Total: -0.79 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.78 Total: 1.02 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.17 Total: -44.62 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.85 -7.83 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326456846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.583 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds