Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47473 * 2 1 4 4 C 1.53004 * 109.46765 * 119.99236 * 2 1 3 5 5 C 1.53005 * 109.47043 * 184.99827 * 4 2 1 6 6 N 1.46494 * 109.47092 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00001 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99865 * 179.97438 * 7 6 5 10 10 H 1.09001 * 110.66523 * 56.78762 * 9 7 6 11 11 C 1.55003 * 110.75122 * 293.36544 * 9 7 6 12 12 C 1.55819 * 102.78763 * 241.67777 * 11 9 7 13 13 H 1.09001 * 115.92880 * 158.43245 * 12 11 9 14 14 C 1.55814 * 105.32893 * 287.30746 * 12 11 9 15 15 C 1.55004 * 102.78966 * 72.69150 * 14 12 11 16 16 C 1.55822 * 110.74635 * 179.97438 * 9 7 6 17 17 H 1.09001 * 115.38817 * 319.48796 * 16 9 7 18 18 O 1.46527 * 101.24555 * 32.41876 * 12 11 9 19 19 N 1.46499 * 109.47175 * 239.99050 * 2 1 3 20 20 C 1.36932 * 119.99549 * 85.00450 * 19 2 1 21 21 H 1.08003 * 120.00354 * 0.02562 * 20 19 2 22 22 C 1.38817 * 120.00011 * 179.97438 * 20 19 2 23 23 N 1.31619 * 120.00154 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 H 1.08996 * 109.47648 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47273 * 300.00822 * 1 2 3 30 30 H 1.09009 * 109.47027 * 60.00060 * 1 2 3 31 31 H 1.08996 * 109.47627 * 305.00012 * 4 2 1 32 32 H 1.09000 * 109.46936 * 65.00137 * 4 2 1 33 33 H 1.09005 * 109.46824 * 299.99980 * 5 4 2 34 34 H 1.08995 * 109.47148 * 59.99876 * 5 4 2 35 35 H 0.97004 * 120.00442 * 0.02562 * 6 5 4 36 36 H 1.09004 * 110.74568 * 0.02562 * 11 9 7 37 37 H 1.08997 * 110.74940 * 123.35176 * 11 9 7 38 38 H 1.09000 * 110.75118 * 314.36907 * 14 12 11 39 39 H 1.08996 * 110.75202 * 191.01912 * 14 12 11 40 40 H 1.08996 * 110.74899 * 241.68308 * 15 14 12 41 41 H 1.08999 * 110.90834 * 118.39352 * 15 14 12 42 42 H 0.96993 * 120.00302 * 265.00414 * 19 2 1 43 43 H 0.96998 * 119.99442 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3139 6 7 4.0530 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7999 2.0243 9 6 5.8761 -2.0500 4.0061 10 1 5.5500 -3.0900 4.0099 11 6 5.4095 -1.3192 5.2909 12 6 6.7544 -0.9019 5.9581 13 1 6.6983 -0.0770 6.6683 14 6 7.3650 -2.2227 6.5152 15 6 7.8317 -2.9536 5.2304 16 6 7.4287 -1.9584 4.1012 17 1 7.9627 -2.0796 3.1587 18 8 7.5973 -0.6711 4.7820 19 7 2.0183 -0.6908 -1.1960 20 6 2.1491 -0.0078 -2.3756 21 1 1.8927 1.0402 -2.4242 22 6 2.6124 -0.6621 -3.5089 23 7 2.7386 -0.0055 -4.6426 24 14 3.0565 -2.4746 -3.4247 25 1 4.4891 -2.6168 -3.0603 26 1 2.8175 -3.1048 -4.7480 27 1 2.2161 -3.1432 -2.3991 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6053 -0.2616 2.1371 32 1 1.7515 -1.7714 1.2058 33 1 3.9993 -1.0729 0.4262 34 1 3.8532 0.4370 1.3574 35 1 3.4258 -1.7362 3.1105 36 1 4.8133 -0.4415 5.0410 37 1 4.8506 -1.9950 5.9382 38 1 6.6085 -2.8073 7.0387 39 1 8.2116 -2.0114 7.1684 40 1 7.3077 -3.9022 5.1138 41 1 8.9106 -3.1088 5.2413 42 1 2.2489 -1.6319 -1.1524 43 1 3.0626 -0.4627 -5.4343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328412984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = -65.543037 kcal Electronic energy + Delta-G solvation = -22523.372137 eV Core-core repulsion = 19182.862768 eV Total energy + Delta-G solvation = -3340.509369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31634 -38.99951 -36.72762 -34.46391 -32.72576 -32.20698 -31.30250 -29.97955 -29.67115 -28.22430 -24.25179 -23.29252 -22.38999 -21.73672 -20.86687 -20.25438 -19.63013 -17.76998 -17.40342 -16.77379 -16.12424 -15.55541 -15.27702 -15.15585 -14.53697 -14.29286 -14.00837 -13.53379 -13.42050 -13.01542 -12.88810 -12.52132 -12.22188 -12.15323 -11.96217 -11.93648 -11.81302 -11.41246 -11.33254 -11.18937 -11.03634 -10.82159 -10.76854 -10.64734 -10.39740 -10.19623 -10.03810 -9.59219 -9.54983 -8.94896 -8.86851 -7.25076 -5.73725 -3.09261 2.70667 3.15933 3.39137 3.42863 3.47943 3.58048 4.14115 4.23115 4.37945 4.51962 4.62122 4.73984 4.76193 4.84069 4.92683 5.09753 5.14240 5.17084 5.21844 5.42578 5.47628 5.48713 5.60112 5.63755 5.64970 5.65391 5.73742 5.81995 5.96046 6.07744 6.24205 6.27216 6.30168 6.37465 6.48987 6.60637 6.78440 6.97756 7.57538 8.02223 8.32622 8.45283 9.23432 9.95971 10.15089 11.44830 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.003623 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.647204 B = 7725.594981 C = 8368.172904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.135 4.135 5 C 0.120 3.880 6 N -0.731 5.731 7 C 0.517 3.483 8 O -0.527 6.527 9 C -0.142 4.142 10 H 0.107 0.893 11 C -0.137 4.137 12 C 0.058 3.942 13 H 0.131 0.869 14 C -0.149 4.149 15 C -0.150 4.150 16 C 0.089 3.911 17 H 0.138 0.862 18 O -0.362 6.362 19 N -0.748 5.748 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -7.187 26.294 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.382 5.382 7 C 0.302 3.698 8 O -0.402 6.402 9 C -0.164 4.164 10 H 0.125 0.875 11 C -0.175 4.175 12 C 0.000 4.000 13 H 0.148 0.852 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.031 3.969 17 H 0.155 0.845 18 O -0.281 6.281 19 N -0.391 5.391 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.918 -6.391 25.465 26.711 hybrid contribution -0.268 -1.784 0.189 1.814 sum 4.649 -8.176 25.653 27.323 Atomic orbital electron populations 1.22395 0.98646 1.00817 1.00520 1.20125 0.92031 0.95902 0.84988 0.92370 1.22104 0.94013 1.01628 0.99640 1.21449 0.94252 0.97570 0.86985 1.46115 1.07225 1.57328 1.27559 1.20285 0.82465 0.80570 0.86506 1.90753 1.55258 1.44935 1.49297 1.23103 0.98344 1.00938 0.93984 0.87496 1.23247 0.98300 1.00882 0.95079 1.24702 0.89302 0.96993 0.88958 0.85159 1.23265 1.01197 0.96440 0.97723 1.23283 1.02278 0.98645 0.94617 1.24506 0.92496 0.83104 0.96817 0.84467 1.90176 1.68184 1.34515 1.35214 1.42820 1.79785 1.09291 1.07245 1.19063 1.36878 0.95515 0.85707 0.89171 1.24656 1.01420 0.97383 0.95594 1.69697 1.52655 1.35544 1.00300 0.86589 0.78554 0.86908 0.76698 1.21011 1.21787 1.20474 0.93669 0.94240 0.92226 0.91469 0.91800 0.90375 0.91416 0.77148 0.90168 0.89665 0.90517 0.90739 0.90451 0.90396 0.80737 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.15 0.35 -2.39 16 2 C 0.18 3.30 2.89 -67.93 -0.20 3.10 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 C -0.14 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.12 1.90 5.56 -4.04 -0.02 1.88 16 6 N -0.73 -9.20 5.56 -60.29 -0.33 -9.53 16 7 C 0.52 7.37 6.98 -10.98 -0.08 7.30 16 8 O -0.53 -10.25 15.92 5.56 0.09 -10.16 16 9 C -0.14 -1.40 2.89 -89.21 -0.26 -1.66 16 10 H 0.11 0.78 7.81 -51.93 -0.41 0.38 16 11 C -0.14 -1.06 6.16 -24.17 -0.15 -1.21 16 12 C 0.06 0.49 5.71 -23.73 -0.14 0.35 16 13 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.15 -0.97 6.52 -24.17 -0.16 -1.13 16 15 C -0.15 -1.12 6.52 -24.17 -0.16 -1.28 16 16 C 0.09 0.97 4.59 -23.72 -0.11 0.86 16 17 H 0.14 1.65 7.80 -51.93 -0.41 1.25 16 18 O -0.36 -4.69 11.65 -35.23 -0.41 -5.10 16 19 N -0.75 -17.39 4.38 -53.43 -0.23 -17.62 16 20 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 21 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 24 Si 0.88 22.53 27.73 -169.99 -4.71 17.81 16 25 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 3.54 8.47 -40.82 -0.35 3.20 16 36 H 0.08 0.70 7.76 -51.93 -0.40 0.29 16 37 H 0.08 0.43 7.80 -51.93 -0.41 0.02 16 38 H 0.08 0.37 7.80 -51.93 -0.41 -0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.46 7.81 -51.93 -0.41 0.05 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 43 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -35.54 344.43 -8.16 -43.70 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.22 Total: 7.85 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.29 Total: -3.14 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.21 Total: -56.16 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.32 Total: -15.26 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.54 -8.16 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328412984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.843 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds