Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 10 10 C 1.34777 * 119.99688 * 274.99602 * 9 2 1 11 11 O 1.21351 * 120.00182 * 0.02562 * 10 9 2 12 12 C 1.49445 * 120.00065 * 180.02562 * 10 9 2 13 13 O 1.21360 * 119.99739 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00380 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00306 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47228 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47037 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00353 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99662 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99468 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00330 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47252 * 89.99973 * 21 19 17 23 23 H 1.48505 * 109.47492 * 210.00169 * 21 19 17 24 24 H 1.48496 * 109.47191 * 330.00471 * 21 19 17 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 29 29 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 33 33 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 35 35 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 36 36 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 37 37 H 0.96993 * 119.99992 * 94.99462 * 9 2 1 38 38 H 0.97002 * 120.00022 * 359.97438 * 14 12 10 39 39 H 1.09004 * 109.46689 * 300.00017 * 15 14 12 40 40 H 1.09007 * 109.47161 * 59.99554 * 15 14 12 41 41 H 1.08995 * 109.47130 * 300.00097 * 16 15 14 42 42 H 1.09006 * 109.46779 * 60.00354 * 16 15 14 43 43 H 0.97004 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 6 4.9763 -2.5528 -2.3575 8 6 5.5702 -1.2401 -2.8722 9 7 2.0184 -0.6907 1.1962 10 6 2.1471 -0.0184 2.3571 11 8 1.8582 1.1589 2.4118 12 6 2.6458 -0.7228 3.5772 13 8 2.9353 -1.9001 3.5224 14 7 2.7741 -0.0507 4.7383 15 6 3.2635 -0.7410 5.9342 16 6 3.3148 0.2420 7.1055 17 6 3.8176 -0.4684 8.3358 18 1 4.0753 -1.5161 8.2871 19 6 3.9488 0.2193 9.5236 20 7 4.3881 -0.4006 10.5972 21 14 3.5038 2.0315 9.6078 22 1 2.0710 2.1731 9.9713 23 1 4.3433 2.7002 10.6341 24 1 3.7434 2.6620 8.2848 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 3.3865 -1.3537 -3.4084 33 1 5.2066 -2.8410 -1.3318 34 1 4.8814 -3.3747 -3.0671 35 1 5.8660 -1.1984 -3.9205 36 1 6.1909 -0.6648 -2.1852 37 1 2.2490 -1.6319 1.1525 38 1 2.5431 0.8904 4.7820 39 1 2.5918 -1.5639 6.1790 40 1 4.2631 -1.1322 5.7444 41 1 3.9866 1.0645 6.8603 42 1 2.3153 0.6333 7.2954 43 1 4.4800 0.0831 11.4330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329596662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -72.680104 kcal Electronic energy + Delta-G solvation = -21567.310874 eV Core-core repulsion = 18226.492018 eV Total energy + Delta-G solvation = -3340.818855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57809 -38.73658 -37.98857 -36.35598 -35.17164 -32.85785 -32.26010 -30.30748 -30.04451 -26.06939 -24.82559 -23.56885 -22.68718 -21.12796 -20.88321 -20.72519 -20.29524 -18.25035 -17.12469 -16.76352 -16.04157 -15.86015 -15.64625 -14.99822 -14.71470 -14.41685 -14.18826 -14.07470 -13.88198 -13.61116 -13.29337 -12.87873 -12.62100 -12.48513 -12.09889 -11.87025 -11.72110 -11.61709 -11.52264 -11.41543 -11.25030 -11.15426 -10.50036 -10.44542 -10.30356 -10.20407 -9.96202 -9.45992 -9.38159 -9.29389 -8.77214 -8.61535 -6.12759 -4.13462 1.56043 2.49307 3.26355 3.34358 3.36309 3.37242 3.45234 3.82008 4.12422 4.37489 4.50664 4.55045 4.62168 4.68531 4.76639 4.85868 5.01140 5.16173 5.20366 5.30831 5.33609 5.38412 5.44115 5.59667 5.60921 5.66595 5.79012 5.81939 5.93513 5.96856 6.01225 6.10098 6.19329 6.46947 6.51575 6.96532 7.11410 7.18236 7.58346 7.62346 7.87628 8.22004 8.41497 8.90548 9.47215 11.00013 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.002845 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.419185 B = 9838.536869 C =10419.432919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.153 4.153 7 C -0.181 4.181 8 C -0.183 4.183 9 N -0.699 5.699 10 C 0.509 3.491 11 O -0.522 6.522 12 C 0.497 3.503 13 O -0.530 6.530 14 N -0.691 5.691 15 C 0.127 3.873 16 C -0.024 4.024 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.412 0.588 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 0.144 -27.900 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.131 4.131 6 C -0.171 4.171 7 C -0.218 4.218 8 C -0.220 4.220 9 N -0.353 5.353 10 C 0.290 3.710 11 O -0.398 6.398 12 C 0.277 3.723 13 O -0.407 6.407 14 N -0.342 5.342 15 C 0.006 3.994 16 C -0.061 4.061 17 C -0.562 4.562 18 H 0.095 0.905 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.248 0.752 38 H 0.244 0.756 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.454 0.178 -27.676 28.033 hybrid contribution -0.184 0.888 0.212 0.932 sum -4.639 1.066 -27.464 27.873 Atomic orbital electron populations 1.22190 0.94826 1.02478 1.02839 1.21115 0.94315 0.97721 0.83424 0.89010 1.21890 0.95794 1.01434 0.96972 1.21228 0.95041 1.00545 0.96244 1.22337 0.93138 1.01662 0.99980 1.23061 1.04393 0.91720 1.02647 1.22969 0.95997 1.01170 1.01905 1.45884 1.65710 1.14917 1.08820 1.20419 0.78700 0.87008 0.84886 1.90746 1.48633 1.15473 1.84905 1.20018 0.80383 0.87191 0.84737 1.90746 1.49639 1.15308 1.85028 1.46210 1.63439 1.15003 1.09564 1.21711 0.99168 0.96360 0.82206 1.19823 0.97347 0.95473 0.93496 1.20878 1.44654 0.98590 0.92119 0.90540 1.24990 0.94397 0.98342 0.95482 1.69905 1.46097 1.36793 1.00768 0.86762 0.78708 0.85471 0.78239 1.20157 1.21230 1.18945 0.92192 0.91808 0.91380 0.90910 0.90038 0.91375 0.91340 0.87865 0.88575 0.88980 0.88970 0.88770 0.75202 0.75591 0.91280 0.91273 0.95722 0.96161 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.17 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.12 -0.76 4.71 -26.73 -0.13 -0.89 16 5 C -0.09 -0.67 5.38 -26.74 -0.14 -0.81 16 6 C -0.15 -1.03 5.74 -90.63 -0.52 -1.55 16 7 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 8 C -0.18 -1.27 10.25 -26.73 -0.27 -1.55 16 9 N -0.70 -7.43 4.52 -54.24 -0.25 -7.67 16 10 C 0.51 7.16 7.85 -11.59 -0.09 7.07 16 11 O -0.52 -8.27 16.14 5.50 0.09 -8.18 16 12 C 0.50 8.16 7.89 -11.59 -0.09 8.07 16 13 O -0.53 -9.68 16.48 5.49 0.09 -9.59 16 14 N -0.69 -11.88 5.55 -60.73 -0.34 -12.22 16 15 C 0.13 2.55 5.61 -4.04 -0.02 2.52 16 16 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 17 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 21 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.57 7.49 -51.93 -0.39 0.19 16 32 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 4.03 8.07 -40.82 -0.33 3.70 16 38 H 0.41 6.53 7.94 -40.82 -0.32 6.21 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 42 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -31.45 361.65 -8.03 -39.49 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.28 Total: 4.95 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.91 Total: -2.28 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.19 Total: -46.31 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.45 -8.03 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329596662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.193 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds