Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46923 * 2 1 4 4 C 1.46498 * 119.99972 * 89.99835 * 3 2 1 5 5 C 1.53001 * 109.47406 * 93.50402 * 4 3 2 6 6 C 1.34775 * 120.00009 * 269.99565 * 3 2 1 7 7 O 1.21351 * 119.99469 * 5.33900 * 6 3 2 8 8 C 1.49450 * 120.00074 * 185.34127 * 6 3 2 9 9 O 1.21346 * 119.99807 * 6.60637 * 8 6 3 10 10 N 1.34776 * 119.99917 * 186.61311 * 8 6 3 11 11 C 1.46928 * 120.63161 * 357.29581 * 10 8 6 12 12 C 1.53618 * 108.54201 * 126.37045 * 11 10 8 13 13 C 1.53046 * 109.24171 * 54.86149 * 12 11 10 14 14 C 1.53047 * 109.53423 * 298.50904 * 13 12 11 15 15 H 1.08997 * 109.49310 * 301.41200 * 14 13 12 16 16 C 1.50694 * 109.52072 * 181.33558 * 14 13 12 17 17 H 1.08000 * 120.00199 * 0.13997 * 16 14 13 18 18 C 1.37882 * 119.99835 * 180.14739 * 16 14 13 19 19 N 1.31511 * 119.99985 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99987 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47134 * 119.99715 * 20 18 16 23 23 H 1.48499 * 109.46995 * 239.99657 * 20 18 16 24 24 C 1.46922 * 120.62991 * 177.58151 * 10 8 6 25 25 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47087 * 300.00488 * 1 2 3 27 27 H 1.09007 * 109.46674 * 60.00052 * 1 2 3 28 28 H 1.09005 * 109.46689 * 119.99405 * 2 1 3 29 29 H 1.08990 * 109.47342 * 239.99485 * 2 1 3 30 30 H 1.09002 * 109.47246 * 213.49995 * 4 3 2 31 31 H 1.08999 * 109.47248 * 333.50180 * 4 3 2 32 32 H 1.08999 * 109.47098 * 59.99687 * 5 4 3 33 33 H 1.08996 * 109.47226 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47082 * 300.00164 * 5 4 3 35 35 H 1.09000 * 109.58654 * 246.20999 * 11 10 8 36 36 H 1.09001 * 109.58537 * 6.62925 * 11 10 8 37 37 H 1.08998 * 109.63474 * 294.86525 * 12 11 10 38 38 H 1.09005 * 109.45906 * 174.73907 * 12 11 10 39 39 H 1.08998 * 109.45992 * 178.48801 * 13 12 11 40 40 H 1.08997 * 109.45754 * 58.52497 * 13 12 11 41 41 H 0.97003 * 120.00187 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.59008 * 353.36886 * 24 10 8 43 43 H 1.09005 * 109.58536 * 113.79245 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.7303 1.9044 1.6664 6 6 2.2430 2.0166 -1.1672 7 8 1.9499 1.4807 -2.2158 8 6 2.8531 3.3809 -1.1700 9 8 3.2561 3.8674 -0.1340 10 7 2.9555 4.0709 -2.3232 11 6 2.5263 3.4722 -3.5945 12 6 1.5304 4.4257 -4.2719 13 6 2.1721 5.8078 -4.4135 14 6 2.5027 6.3632 -3.0262 15 1 1.5911 6.4232 -2.4318 16 6 3.1044 7.7379 -3.1644 17 1 3.2361 8.1738 -4.1437 18 6 3.4871 8.4390 -2.0406 19 7 3.3265 7.9084 -0.8481 20 14 4.2337 10.1428 -2.2119 21 1 4.3065 10.5091 -3.6491 22 1 3.3882 11.1285 -1.4915 23 1 5.6004 10.1450 -1.6311 24 6 3.5043 5.4337 -2.3339 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8898 30 1 2.0356 3.1319 1.1549 31 1 1.6252 1.6451 2.0432 32 1 4.3676 2.3313 0.8919 33 1 3.9120 2.4187 2.6101 34 1 3.9573 0.8444 1.7802 35 1 3.3923 3.3249 -4.2398 36 1 2.0440 2.5137 -3.4025 37 1 0.6280 4.5039 -3.6656 38 1 1.2734 4.0411 -5.2589 39 1 1.4784 6.4803 -4.9181 40 1 3.0877 5.7248 -4.9990 41 1 3.5954 8.4018 -0.0574 42 1 3.6675 5.7700 -1.3100 43 1 4.4485 5.4431 -2.8786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333360258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -69.641981 kcal Electronic energy + Delta-G solvation = -23792.247154 eV Core-core repulsion = 20451.560041 eV Total energy + Delta-G solvation = -3340.687113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10119 -39.88143 -38.69230 -37.34614 -35.16102 -33.46057 -32.95631 -31.53959 -30.63095 -27.63993 -26.82442 -25.13676 -24.54203 -23.54050 -22.69086 -20.93873 -20.00989 -18.61537 -18.08675 -17.90542 -17.15141 -17.07240 -16.46331 -16.05937 -15.55528 -15.32355 -15.12028 -14.74356 -14.62539 -14.48398 -14.39053 -13.96118 -13.75223 -13.50680 -13.46951 -13.08763 -12.91036 -12.79958 -12.69221 -12.37861 -12.31314 -12.12648 -11.96837 -11.91635 -11.69670 -11.33767 -11.06063 -10.96742 -10.55125 -9.95396 -9.84286 -9.46416 -8.12273 -6.28645 0.39766 1.35003 1.41753 1.42502 1.54102 2.17892 2.39974 2.47214 3.14051 3.20565 3.99539 4.14789 4.15929 4.17521 4.24319 4.35217 4.47174 4.51982 4.58494 4.61531 4.68039 4.74521 4.81474 4.84907 4.96840 4.99982 5.04944 5.14528 5.17667 5.22636 5.30715 5.32458 5.34938 5.51378 5.56074 5.63467 5.84427 5.93451 5.98851 6.28927 6.44866 6.73721 6.83234 7.05101 7.41100 8.91902 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.005166 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.582909 B = 5419.148251 C = 6325.803161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.575 5.575 4 C 0.101 3.899 5 C -0.152 4.152 6 C 0.513 3.487 7 O -0.524 6.524 8 C 0.479 3.521 9 O -0.537 6.537 10 N -0.577 5.577 11 C 0.048 3.952 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.040 3.960 15 H -0.011 1.011 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.913 5.913 20 Si 0.959 3.041 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.123 3.877 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.157 0.843 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -16.736 2.301 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.307 5.307 4 C -0.021 4.021 5 C -0.210 4.210 6 C 0.296 3.704 7 O -0.404 6.404 8 C 0.262 3.738 9 O -0.416 6.416 10 N -0.309 5.309 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.145 4.145 14 C 0.021 3.979 15 H 0.007 0.993 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.552 5.552 20 Si 0.784 3.216 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.001 3.999 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.549 -16.738 2.503 17.292 hybrid contribution 0.559 1.547 0.079 1.647 sum -2.990 -15.191 2.582 15.696 Atomic orbital electron populations 1.22102 0.94690 1.03588 1.01742 1.21856 0.95377 0.79641 1.04793 1.48121 1.61985 1.15063 1.05501 1.21971 0.98033 0.98208 0.83876 1.22014 0.95682 1.01748 1.01595 1.20128 0.79171 0.86255 0.84797 1.90210 1.53247 1.66897 1.30056 1.20453 0.81637 0.87290 0.84392 1.90701 1.49151 1.70474 1.31300 1.48483 1.58986 1.15857 1.07576 1.23463 0.99213 1.01108 0.83476 1.21937 0.97628 0.95219 1.01220 1.21560 0.99759 0.95789 0.97344 1.18893 0.93386 0.93151 0.92499 0.99290 1.21506 1.41667 1.01236 0.93045 0.92081 1.25857 0.95977 1.01837 0.94991 1.70051 1.47963 1.38946 0.98224 0.85494 0.77933 0.79665 0.78504 1.18733 1.20711 1.20686 1.21910 0.95758 0.78300 1.03913 0.88939 0.91951 0.94356 0.86838 0.90115 0.90996 0.87281 0.94714 0.90913 0.91176 0.91411 0.82694 0.93522 0.88506 0.92850 0.92609 0.92926 0.89404 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 71.98 0.74 -1.92 16 2 C 0.10 1.86 6.07 86.38 0.52 2.38 16 3 N -0.57 -15.01 2.48 -823.38 -2.04 -17.05 16 4 C 0.10 2.52 5.67 86.38 0.49 3.01 16 5 C -0.15 -3.75 9.68 71.98 0.70 -3.06 16 6 C 0.51 17.30 7.63 87.27 0.67 17.97 16 7 O -0.52 -17.77 12.65 -3.25 -0.04 -17.81 16 8 C 0.48 19.96 7.54 87.27 0.66 20.62 16 9 O -0.54 -24.57 10.85 -3.23 -0.04 -24.61 16 10 N -0.58 -25.00 2.97 -819.67 -2.43 -27.43 16 11 C 0.05 1.71 6.27 86.51 0.54 2.26 16 12 C -0.12 -4.27 6.10 30.82 0.19 -4.08 16 13 C -0.11 -4.44 5.11 30.63 0.16 -4.28 16 14 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 15 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 16 C -0.54 -29.80 8.57 25.60 0.22 -29.58 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.73 5.30 84.66 0.45 1.18 16 19 N -0.91 -54.38 11.39 21.45 0.24 -54.14 16 20 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.12 6.25 5.39 86.36 0.47 6.71 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.11 1.31 8.07 -2.38 -0.02 1.29 16 29 H 0.08 1.55 7.50 -2.39 -0.02 1.53 16 30 H 0.07 2.37 5.83 -2.39 -0.01 2.35 16 31 H 0.11 1.88 8.05 -2.39 -0.02 1.86 16 32 H 0.03 1.11 6.49 -2.39 -0.02 1.09 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.16 5.38 3.75 -83.89 -0.31 5.06 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.09 5.14 5.13 -2.39 -0.01 5.13 16 43 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -67.09 335.59 4.17 -62.91 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.68 Total: 18.81 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.77 Total: 13.25 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.23 Total: -98.61 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.08 Total: -42.41 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.09 4.17 -62.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333360258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.727 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds