Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47363 * 2 1 4 4 C 1.42903 * 114.00058 * 179.97438 * 3 2 1 5 5 C 1.53784 * 113.61237 * 209.99600 * 4 3 2 6 6 C 1.53783 * 87.07861 * 220.02002 * 5 4 3 7 7 O 1.42906 * 113.61398 * 270.80044 * 6 5 4 8 8 C 1.52999 * 113.61140 * 139.98914 * 6 5 4 9 9 N 1.46904 * 109.47241 * 186.52887 * 8 6 5 10 10 C 1.46891 * 111.00250 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47278 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46986 * 55.00108 * 11 10 9 13 13 C 1.47206 * 109.47021 * 295.00292 * 11 10 9 14 14 N 9.81366 * 145.57551 * 326.51867 * 2 1 3 15 15 C 1.52997 * 109.47415 * 175.00226 * 11 10 9 16 16 C 1.50702 * 109.47345 * 185.00243 * 15 11 10 17 17 H 1.08004 * 119.99515 * 359.97438 * 16 15 11 18 18 C 1.37877 * 119.99986 * 179.97438 * 16 15 11 19 19 N 1.31518 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47233 * 90.00115 * 20 18 16 22 22 H 1.48500 * 109.46846 * 210.00038 * 20 18 16 23 23 H 1.48505 * 109.47120 * 329.99702 * 20 18 16 24 24 C 1.53769 * 87.17470 * 25.39265 * 6 5 4 25 25 H 1.09003 * 109.47084 * 300.00737 * 1 2 3 26 26 H 1.09013 * 109.46732 * 59.99984 * 1 2 3 27 27 H 1.08996 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47351 * 239.99656 * 2 1 3 29 29 H 1.08998 * 109.46872 * 119.99628 * 2 1 3 30 30 H 1.08993 * 112.84896 * 341.19258 * 4 3 2 31 31 H 1.09003 * 113.61266 * 105.47199 * 5 4 3 32 32 H 1.08997 * 113.69461 * 334.58119 * 5 4 3 33 33 H 0.96698 * 113.99715 * 178.47207 * 7 6 5 34 34 H 1.08995 * 109.47521 * 66.52147 * 8 6 5 35 35 H 1.09007 * 109.46927 * 306.52552 * 8 6 5 36 36 H 1.00903 * 110.99761 * 303.95429 * 9 8 6 37 37 H 1.09006 * 109.47007 * 60.00330 * 10 9 8 38 38 H 1.09000 * 109.47328 * 299.99801 * 10 9 8 39 39 H 1.09001 * 109.46992 * 305.00579 * 15 11 10 40 40 H 1.08998 * 109.47097 * 64.99767 * 15 11 10 41 41 H 0.96993 * 119.99693 * 180.02562 * 19 18 16 42 42 H 1.09002 * 113.61732 * 89.15866 * 24 6 5 43 43 H 1.08999 * 113.61817 * 220.06038 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9484 2.7253 0.7051 6 6 4.9900 2.8312 -0.4213 7 8 6.2023 2.1256 -0.1480 8 6 5.2317 4.2642 -0.8998 9 7 6.1170 4.2463 -2.0719 10 6 6.3713 5.6081 -2.5604 11 6 7.2955 5.5489 -3.7783 12 1 6.8622 4.8908 -4.5315 13 6 8.6112 5.0291 -3.3711 14 7 9.6250 4.6273 -3.0606 15 6 7.4605 6.9534 -4.3622 16 6 8.2695 6.8779 -5.6314 17 1 8.6303 5.9236 -5.9858 18 6 8.5491 8.0271 -6.3401 19 7 8.1093 9.1891 -5.9087 20 14 9.5513 7.9334 -7.9136 21 1 8.6402 7.7390 -9.0700 22 1 10.3136 9.1955 -8.0908 23 1 10.4970 6.7915 -7.8309 24 6 4.0051 2.0452 -1.3026 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9277 0.5456 0.3247 31 1 4.3836 2.5320 1.6856 32 1 3.2308 3.5457 0.7148 33 1 6.8523 2.1691 -0.8627 34 1 5.6982 4.8403 -0.1008 35 1 4.2802 4.7223 -1.1701 36 1 6.9814 3.7688 -1.8649 37 1 6.8458 6.1939 -1.7730 38 1 5.4277 6.0752 -2.8423 39 1 6.4788 7.3733 -4.5815 40 1 7.9744 7.5887 -3.6409 41 1 8.3056 9.9974 -6.4075 42 1 3.3021 2.6785 -1.8437 43 1 4.4859 1.3037 -1.9406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338537581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -62.086428 kcal Electronic energy + Delta-G solvation = -21653.726713 eV Core-core repulsion = 18313.367233 eV Total energy + Delta-G solvation = -3340.359479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27077 -37.84793 -37.08789 -34.98437 -34.43004 -33.52707 -31.64907 -31.06833 -27.82924 -26.08252 -25.53560 -23.20772 -22.82225 -22.11270 -21.63464 -19.95848 -17.48153 -16.84219 -16.73791 -16.40813 -15.97647 -15.95898 -15.21022 -14.99253 -14.54490 -14.00341 -13.69854 -13.47449 -13.23466 -13.09007 -13.01966 -12.65195 -12.48205 -12.37071 -12.15903 -12.12855 -11.82667 -11.60086 -11.50400 -11.30533 -11.09981 -11.06284 -10.79583 -10.68770 -10.44757 -10.32305 -9.96986 -9.62477 -9.55927 -9.25346 -8.48933 -8.45462 -6.12033 -4.15363 3.27752 3.34666 3.38857 3.42380 3.52321 3.57309 3.79145 3.98673 4.33426 4.39510 4.51023 4.68745 4.71147 4.75863 4.79147 4.89519 5.02812 5.07709 5.25996 5.28574 5.33399 5.50569 5.55714 5.57366 5.59836 5.61819 5.66307 5.78696 5.85579 5.93623 6.03371 6.08534 6.28110 6.49320 6.92414 7.04382 7.22369 7.40121 7.43756 7.49263 7.82781 8.19998 8.34303 8.89130 9.50295 10.98842 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002707 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.318476 B =10340.040271 C =10714.370421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.066 3.934 5 C -0.121 4.121 6 C 0.111 3.889 7 O -0.546 6.546 8 C 0.044 3.956 9 N -0.689 5.689 10 C 0.068 3.932 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.240 3.760 14 N -0.474 5.474 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.163 4.163 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.382 0.618 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.332 0.668 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -14.786 12.441 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.008 3.992 5 C -0.159 4.159 6 C 0.069 3.931 7 O -0.353 6.353 8 C -0.086 4.086 9 N -0.321 5.321 10 C -0.061 4.061 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.077 4.077 14 N -0.151 5.151 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.201 4.201 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.231 0.769 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.532 -15.292 12.987 24.200 hybrid contribution 1.346 0.485 -0.958 1.722 sum -12.186 -14.806 12.029 22.637 Atomic orbital electron populations 1.21753 0.93855 1.02155 1.03152 1.22488 0.95518 0.84110 0.99952 1.87931 1.20815 1.26176 1.94611 1.23669 0.80656 0.97890 0.96989 1.23298 0.95951 0.98499 0.98112 1.21925 0.84460 0.90587 0.96104 1.86442 1.27209 1.75214 1.46422 1.22458 0.98936 0.95405 0.91790 1.60580 1.19332 1.18791 1.33444 1.22095 1.00033 0.88198 0.95812 1.19337 0.83382 1.02095 0.96738 0.87079 1.29250 0.94960 0.91567 0.91929 1.80958 1.11780 1.11679 1.10719 1.19165 0.98723 0.86900 0.95859 1.21136 1.33980 0.93567 1.07817 0.92503 1.24959 0.95791 0.95384 0.97876 1.69936 1.45609 0.98111 1.39337 0.86581 0.80330 0.77572 0.83544 1.20409 1.21159 1.19893 1.24067 0.98562 1.00363 0.97062 0.91916 0.91762 0.91247 0.93386 0.93558 0.89392 0.90236 0.87757 0.76926 0.94274 0.89237 0.84945 0.94501 0.88808 0.94171 0.95741 0.92768 0.88195 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.44 6.50 37.16 0.24 0.69 16 3 O -0.38 -3.89 10.36 -35.23 -0.36 -4.26 16 4 C 0.07 0.64 4.25 -25.82 -0.11 0.53 16 5 C -0.12 -1.15 7.31 -25.92 -0.19 -1.34 16 6 C 0.11 1.13 1.52 -89.81 -0.14 0.99 16 7 O -0.55 -6.08 13.39 -35.23 -0.47 -6.55 16 8 C 0.04 0.46 5.28 -3.82 -0.02 0.44 16 9 N -0.69 -8.34 6.46 -113.78 -0.74 -9.07 16 10 C 0.07 0.96 5.12 -3.83 -0.02 0.94 16 11 C 0.01 0.11 2.42 -93.40 -0.23 -0.11 16 12 H 0.11 1.89 8.14 -51.93 -0.42 1.46 16 13 C 0.24 4.69 12.97 -20.83 -0.27 4.42 16 14 N -0.47 -10.04 18.52 42.07 0.78 -9.26 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -13.88 8.60 -34.44 -0.30 -14.17 16 17 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.16 -1.63 7.32 -25.83 -0.19 -1.82 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.38 3.63 7.37 45.56 0.34 3.96 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.33 4.07 6.17 -39.29 -0.24 3.83 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.10 1.04 8.06 -51.93 -0.42 0.62 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -30.09 361.71 -7.28 -37.37 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.60 Total: 2.60 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.05 Total: -7.83 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.78 Total: -42.96 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.84 Total: -10.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.09 -7.28 -37.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338537581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.714 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds