Wall clock time and date at job start Tue Mar 31 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46806 * 2 1 4 4 C 1.42899 * 113.99776 * 180.02562 * 3 2 1 5 5 C 1.53780 * 113.61296 * 210.00124 * 4 3 2 6 6 C 1.53781 * 87.07827 * 220.02043 * 5 4 3 7 7 O 1.42901 * 113.61622 * 270.79700 * 6 5 4 8 8 C 1.53001 * 113.61406 * 139.98313 * 6 5 4 9 9 N 1.46904 * 109.47256 * 186.52815 * 8 6 5 10 10 C 1.46896 * 111.00016 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47181 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 8.50408 * 122.28739 * 307.06095 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46754 * 90.00399 * 20 18 16 22 22 H 1.48503 * 109.46996 * 209.99720 * 20 18 16 23 23 H 1.48501 * 109.47356 * 330.00401 * 20 18 16 24 24 C 1.53779 * 87.17470 * 25.39225 * 6 5 4 25 25 H 1.08994 * 109.47743 * 60.00165 * 1 2 3 26 26 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47009 * 299.99371 * 1 2 3 28 28 H 1.09000 * 109.47009 * 240.00629 * 2 1 3 29 29 H 1.09001 * 109.47176 * 120.00143 * 2 1 3 30 30 H 1.08997 * 112.85235 * 341.19813 * 4 3 2 31 31 H 1.08994 * 113.61362 * 105.47319 * 5 4 3 32 32 H 1.09004 * 113.69217 * 334.57605 * 5 4 3 33 33 H 0.96695 * 114.00192 * 178.47134 * 7 6 5 34 34 H 1.08998 * 109.47638 * 66.52559 * 8 6 5 35 35 H 1.09003 * 109.46856 * 306.52520 * 8 6 5 36 36 H 1.00903 * 111.00052 * 56.04255 * 9 8 6 37 37 H 1.09008 * 109.47165 * 59.99956 * 10 9 8 38 38 H 1.08997 * 109.47437 * 299.99850 * 10 9 8 39 39 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 40 40 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 41 41 H 0.97004 * 119.99775 * 180.02562 * 19 18 16 42 42 H 1.08998 * 113.61477 * 89.16369 * 24 6 5 43 43 H 1.09005 * 113.61444 * 220.06012 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9488 2.7252 0.7039 6 6 4.9895 2.8315 -0.4233 7 8 6.2020 2.1260 -0.1514 8 6 5.2306 4.2647 -0.9016 9 7 6.1149 4.2473 -2.0744 10 6 6.3687 5.6093 -2.5627 11 6 7.2918 5.5505 -3.7814 12 1 8.1996 5.0050 -3.5236 13 6 6.6032 4.8629 -4.8858 14 7 6.0726 4.3327 -5.7369 15 6 7.6565 6.9720 -4.2141 16 6 8.6613 6.9135 -5.3357 17 1 9.0052 5.9580 -5.7034 18 6 9.1418 8.0799 -5.8924 19 7 10.0183 8.0288 -6.8715 20 14 8.5465 9.7325 -5.2569 21 1 9.4316 10.1868 -4.1544 22 1 8.5784 10.7273 -6.3591 23 1 7.1565 9.5973 -4.7520 24 6 4.0037 2.0458 -1.3040 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9280 0.5457 0.3228 31 1 4.3849 2.5316 1.6839 32 1 3.2312 3.5456 0.7145 33 1 6.8514 2.1698 -0.8665 34 1 5.6978 4.8407 -0.1028 35 1 4.2788 4.7228 -1.1709 36 1 5.7338 3.6663 -2.8061 37 1 6.8437 6.1949 -1.7755 38 1 5.4248 6.0763 -2.8437 39 1 6.7599 7.4889 -4.5562 40 1 8.0860 7.5101 -3.3691 41 1 10.3566 8.8494 -7.2629 42 1 3.3004 2.6794 -1.8444 43 1 4.4841 1.3045 -1.9427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338537586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:16 Heat of formation + Delta-G solvation = -59.295308 kcal Electronic energy + Delta-G solvation = -21731.997277 eV Core-core repulsion = 18391.758830 eV Total energy + Delta-G solvation = -3340.238447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30600 -37.86911 -37.16762 -35.02915 -34.33807 -33.53576 -31.79899 -31.12656 -28.18536 -26.25396 -25.67241 -23.23736 -22.78654 -22.19035 -21.39564 -19.93289 -17.50636 -16.99662 -16.86012 -16.57578 -16.04404 -15.76144 -15.44076 -15.08338 -14.32616 -14.13768 -13.91086 -13.44755 -13.27161 -13.14473 -13.08945 -12.77296 -12.47022 -12.41964 -12.32021 -12.25546 -12.09933 -11.68668 -11.52689 -11.44837 -11.20487 -11.16007 -10.90175 -10.66091 -10.45571 -10.01625 -9.90998 -9.76314 -9.65592 -9.35793 -8.64483 -8.58154 -6.13090 -4.14019 3.24001 3.32980 3.33367 3.36752 3.48026 3.52150 3.84722 3.95860 4.23212 4.35949 4.42993 4.63019 4.63416 4.68926 4.73970 4.84034 5.01139 5.04584 5.21291 5.22379 5.30402 5.37792 5.45987 5.50242 5.54656 5.55224 5.57111 5.72724 5.75484 5.86248 5.92404 5.97336 6.11063 6.30351 6.82912 6.89399 6.98681 7.09298 7.20772 7.59500 7.60720 8.28311 8.39239 8.90112 9.46561 10.99940 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031151 B = 0.002804 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.620637 B = 9984.633570 C =10178.865006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.071 3.929 5 C -0.121 4.121 6 C 0.117 3.883 7 O -0.541 6.541 8 C 0.043 3.957 9 N -0.693 5.693 10 C 0.066 3.934 11 C 0.017 3.983 12 H 0.117 0.883 13 C 0.237 3.763 14 N -0.467 5.467 15 C -0.004 4.004 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.185 4.185 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.391 0.609 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.339 0.661 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.035 0.965 41 H 0.265 0.735 42 H 0.094 0.906 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 -12.069 17.893 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.013 3.987 5 C -0.159 4.159 6 C 0.075 3.925 7 O -0.348 6.348 8 C -0.087 4.087 9 N -0.324 5.324 10 C -0.064 4.064 11 C -0.005 4.005 12 H 0.135 0.865 13 C -0.080 4.080 14 N -0.143 5.143 15 C -0.043 4.043 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.705 3.295 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.223 4.223 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.241 0.759 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.157 0.843 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.991 -12.756 17.409 26.278 hybrid contribution -0.322 1.273 -0.607 1.447 sum -15.313 -11.483 16.801 25.468 Atomic orbital electron populations 1.21752 0.93836 1.02211 1.03127 1.22502 0.95542 0.84032 1.00019 1.87934 1.20823 1.26288 1.94581 1.23585 0.80653 0.98095 0.96358 1.23294 0.95954 0.98258 0.98384 1.21800 0.84660 0.90314 0.95732 1.86354 1.26899 1.74508 1.47073 1.22467 0.95819 0.96042 0.94380 1.60478 1.49359 1.12944 1.09617 1.22110 0.98448 0.89098 0.96727 1.19073 0.96729 0.98658 0.86061 0.86526 1.29103 0.92631 0.92146 0.94114 1.80994 1.11266 1.11707 1.10363 1.19629 0.97687 0.89124 0.97887 1.21021 1.23751 0.94962 1.16919 0.90785 1.25002 0.94444 0.99202 0.94524 1.69908 1.30259 1.28312 1.24950 0.86808 0.79923 0.83946 0.78811 1.19961 1.21326 1.18926 1.24268 0.99231 1.00952 0.97814 0.91832 0.91177 0.91886 0.93396 0.93410 0.89128 0.89939 0.87988 0.75883 0.89657 0.93895 0.84278 0.88854 0.94491 0.95851 0.94662 0.92539 0.88790 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.38 -3.90 10.36 -35.23 -0.36 -4.27 16 4 C 0.07 0.68 4.25 -25.83 -0.11 0.57 16 5 C -0.12 -1.10 7.31 -25.92 -0.19 -1.29 16 6 C 0.12 1.14 1.48 -89.81 -0.13 1.00 16 7 O -0.54 -5.78 13.41 -35.23 -0.47 -6.25 16 8 C 0.04 0.42 5.27 -3.82 -0.02 0.40 16 9 N -0.69 -7.87 5.84 -113.78 -0.66 -8.54 16 10 C 0.07 0.86 5.12 -3.83 -0.02 0.84 16 11 C 0.02 0.28 2.42 -93.40 -0.23 0.06 16 12 H 0.12 1.91 8.14 -51.93 -0.42 1.49 16 13 C 0.24 4.58 12.97 -20.81 -0.27 4.31 16 14 N -0.47 -9.91 18.53 42.09 0.78 -9.13 16 15 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 16 C -0.53 -14.06 9.15 -34.44 -0.32 -14.38 16 17 H 0.07 2.16 7.84 -52.48 -0.41 1.75 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 20 Si 0.88 20.47 27.47 -169.99 -4.67 15.81 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.26 -5.83 6.54 56.52 0.37 -5.47 16 24 C -0.18 -1.81 7.05 -25.83 -0.18 -1.99 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.88 8.10 -51.93 -0.42 0.45 16 33 H 0.39 3.65 8.43 45.56 0.38 4.04 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.34 4.09 7.56 -39.29 -0.30 3.79 16 37 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -31.07 359.64 -6.81 -37.88 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.58 Total: 3.95 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.04 Total: -8.74 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.89 Total: -43.79 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.84 Total: -10.52 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.07 -6.81 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338537586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.417 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds