Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21273 * 119.99795 * 2 1 4 4 N 1.34771 * 119.99603 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.63602 * 355.64332 * 4 2 1 6 6 C 1.53187 * 108.77616 * 233.62884 * 5 4 2 7 7 C 1.53037 * 109.31150 * 305.36050 * 6 5 4 8 8 C 1.53041 * 109.54071 * 61.36658 * 7 6 5 9 9 C 1.46924 * 120.62961 * 175.66081 * 4 2 1 10 10 H 1.09008 * 109.58540 * 246.16171 * 9 4 2 11 11 C 1.50706 * 109.58574 * 6.44174 * 9 4 2 12 12 O 1.21276 * 120.00095 * 66.59731 * 11 9 4 13 13 N 1.34779 * 119.99856 * 246.59255 * 11 9 4 14 14 C 1.46497 * 120.00097 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99716 * 179.97438 * 13 11 9 16 16 H 1.08993 * 109.47182 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.46675 * 120.00431 * 15 13 11 18 18 C 1.50697 * 109.47324 * 240.00087 * 15 13 11 19 19 H 1.08002 * 119.99889 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00441 * 180.02562 * 18 15 13 21 21 N 1.31517 * 119.99486 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00200 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47097 * 90.00260 * 22 20 18 24 24 H 1.48500 * 109.46916 * 209.99798 * 22 20 18 25 25 H 1.48500 * 109.47204 * 330.00208 * 22 20 18 26 26 H 1.08992 * 109.47701 * 270.00556 * 1 2 3 27 27 H 1.09005 * 109.46746 * 30.01083 * 1 2 3 28 28 H 1.08993 * 109.46962 * 150.00043 * 1 2 3 29 29 H 1.09006 * 109.58266 * 353.41577 * 5 4 2 30 30 H 1.08994 * 109.58693 * 113.83745 * 5 4 2 31 31 H 1.09001 * 109.49920 * 65.30909 * 6 5 4 32 32 H 1.08997 * 109.49715 * 185.40920 * 6 5 4 33 33 H 1.08997 * 109.46273 * 301.34303 * 7 6 5 34 34 H 1.09008 * 109.45101 * 181.37426 * 7 6 5 35 35 H 1.08999 * 109.49971 * 178.68342 * 8 7 6 36 36 H 1.09002 * 109.49529 * 58.58078 * 8 7 6 37 37 H 1.08999 * 109.47239 * 89.99774 * 14 13 11 38 38 H 1.08998 * 109.47097 * 209.99863 * 14 13 11 39 39 H 1.09002 * 109.47489 * 329.99614 * 14 13 11 40 40 H 1.08993 * 109.47151 * 60.00183 * 17 15 13 41 41 H 1.09006 * 109.46868 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47276 * 299.99601 * 17 15 13 43 43 H 0.96994 * 119.99782 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4634 -2.4458 0.0971 6 6 2.0480 -3.2524 1.2609 7 6 3.5599 -3.3930 1.0702 8 6 4.2070 -2.0061 1.0707 9 6 3.6468 -1.1853 -0.0951 10 1 3.9458 -1.6405 -1.0394 11 6 4.1752 0.2243 -0.0242 12 8 4.0597 0.8644 0.9994 13 7 4.7761 0.7736 -1.0983 14 6 4.9152 0.0006 -2.3349 15 6 5.2892 2.1441 -1.0295 16 1 5.0956 2.5552 -0.0388 17 6 6.7963 2.1382 -1.2932 18 6 4.6008 2.9910 -2.0687 19 1 3.8553 2.5523 -2.7154 20 6 4.9226 4.3258 -2.1938 21 7 5.8308 4.8598 -1.4066 22 14 4.0688 5.3757 -3.4815 23 1 2.8462 5.9812 -2.8952 24 1 4.9876 6.4523 -3.9309 25 1 3.6939 4.5283 -4.6419 26 1 -0.3634 0.0001 1.0275 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8899 -0.5138 29 1 0.4050 -2.2581 0.2778 30 1 1.5844 -3.0037 -0.8314 31 1 1.8461 -2.7359 2.1992 32 1 1.5907 -4.2416 1.2838 33 1 3.7617 -3.8875 0.1201 34 1 3.9747 -3.9875 1.8843 35 1 5.2864 -2.1082 0.9583 36 1 3.9847 -1.5013 2.0109 37 1 4.0425 0.1656 -2.9667 38 1 5.8127 0.3204 -2.8643 39 1 4.9940 -1.0596 -2.0939 40 1 6.9902 1.7269 -2.2837 41 1 7.1782 3.1578 -1.2415 42 1 7.2943 1.5256 -0.5415 43 1 6.0570 5.7989 -1.4944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339291386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -52.561239 kcal Electronic energy + Delta-G solvation = -24293.991062 eV Core-core repulsion = 20954.044626 eV Total energy + Delta-G solvation = -3339.946436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54118 -38.00186 -37.10423 -35.00761 -32.92290 -32.73978 -31.49283 -29.28539 -29.11840 -25.94582 -25.38418 -25.00215 -23.75318 -21.14198 -20.97201 -19.07915 -17.99265 -16.86490 -16.23072 -16.12579 -15.73824 -15.08739 -14.99966 -14.49135 -14.10883 -13.91282 -13.75588 -13.54958 -13.20172 -12.85098 -12.68246 -12.41748 -12.10829 -12.10606 -11.73271 -11.65149 -11.41735 -11.24447 -11.02799 -10.92300 -10.86458 -10.72579 -10.65363 -10.51603 -10.08426 -9.98937 -9.09245 -8.92749 -8.62427 -8.38040 -8.21837 -7.27744 -5.89135 -3.93935 2.92373 3.01205 3.37771 3.43514 3.45708 3.97691 4.09756 4.53679 4.63110 4.70296 4.79966 4.94620 5.11402 5.17281 5.23907 5.27338 5.36217 5.41239 5.44816 5.51938 5.65609 5.75678 5.78937 5.85373 5.92522 5.96974 6.00932 6.18989 6.33797 6.41893 6.63311 6.90454 6.96833 7.23507 7.60081 7.66151 7.75522 7.93179 8.22737 8.42974 8.57111 8.80401 9.06225 9.43224 9.71230 11.16619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.005769 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.830958 B = 4852.240255 C = 5495.917801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.488 3.512 3 O -0.472 6.472 4 N -0.609 5.609 5 C 0.110 3.890 6 C -0.136 4.136 7 C -0.116 4.116 8 C -0.122 4.122 9 C 0.118 3.882 10 H 0.086 0.914 11 C 0.528 3.472 12 O -0.535 6.535 13 N -0.593 5.593 14 C 0.088 3.912 15 C 0.266 3.734 16 H 0.062 0.938 17 C -0.147 4.147 18 C -0.507 4.507 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.092 0.908 42 H 0.009 0.991 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 -19.290 1.321 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.276 3.724 3 O -0.343 6.343 4 N -0.348 5.348 5 C -0.013 4.013 6 C -0.175 4.175 7 C -0.154 4.154 8 C -0.161 4.161 9 C 0.012 3.988 10 H 0.104 0.896 11 C 0.315 3.685 12 O -0.412 6.412 13 N -0.326 5.326 14 C -0.056 4.056 15 C 0.166 3.834 16 H 0.080 0.920 17 C -0.206 4.206 18 C -0.546 4.546 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.111 0.889 42 H 0.028 0.972 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.382 -18.115 1.883 19.652 hybrid contribution -0.555 0.420 -0.883 1.124 sum -7.937 -17.695 1.001 19.419 Atomic orbital electron populations 1.21911 0.92202 1.04382 1.04236 1.20956 0.90601 0.83685 0.77198 1.91043 1.67957 1.30093 1.45188 1.48021 1.05153 1.06186 1.75459 1.21729 0.96622 0.84370 0.98535 1.21936 0.96366 1.00076 0.99081 1.21503 0.95109 0.96714 1.02074 1.21799 1.00091 0.95057 0.99109 1.21440 0.80945 0.96798 0.99627 0.89604 1.19483 0.78037 0.86444 0.84556 1.90612 1.57073 1.62091 1.31457 1.48005 1.57851 1.16391 1.10349 1.21536 1.01989 0.93722 0.88344 1.18791 0.89738 0.75626 0.99282 0.92025 1.22116 0.98473 1.02929 0.97050 1.21291 1.21401 0.94221 1.17702 0.92660 1.24872 0.95263 0.97633 0.96264 1.69885 1.31950 1.12868 1.38524 0.86528 0.79393 0.80000 0.81607 1.20763 1.21302 1.20127 0.89354 0.89022 0.90481 0.89447 0.91535 0.91305 0.90816 0.91771 0.91472 0.90743 0.90309 0.93947 0.91010 0.93309 0.95316 0.88915 0.97176 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.33 36.01 0.34 -1.67 16 2 C 0.49 8.65 7.68 -10.99 -0.08 8.57 16 3 O -0.47 -11.61 12.65 -19.21 -0.24 -11.86 16 4 N -0.61 -8.97 2.97 -166.53 -0.49 -9.47 16 5 C 0.11 1.02 6.16 -3.71 -0.02 1.00 16 6 C -0.14 -1.14 6.08 -26.62 -0.16 -1.31 16 7 C -0.12 -1.09 5.88 -26.69 -0.16 -1.24 16 8 C -0.12 -1.66 5.29 -26.61 -0.14 -1.80 16 9 C 0.12 1.93 2.97 -68.75 -0.20 1.73 16 10 H 0.09 1.23 5.35 -51.92 -0.28 0.95 16 11 C 0.53 12.01 4.22 -10.98 -0.05 11.97 16 12 O -0.54 -14.61 13.88 -19.22 -0.27 -14.87 16 13 N -0.59 -13.92 2.75 -175.26 -0.48 -14.40 16 14 C 0.09 1.63 9.37 59.85 0.56 2.19 16 15 C 0.27 7.39 2.64 -69.08 -0.18 7.21 16 16 H 0.06 2.02 6.90 -51.93 -0.36 1.66 16 17 C -0.15 -3.75 8.95 37.16 0.33 -3.42 16 18 C -0.51 -14.90 8.37 -34.44 -0.29 -15.19 16 19 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -26.89 11.32 55.43 0.63 -26.26 16 22 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 0.65 6.41 -51.93 -0.33 0.32 16 29 H 0.09 0.63 5.68 -51.93 -0.30 0.34 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.32 6.43 -51.93 -0.33 0.98 16 39 H 0.05 0.71 5.82 -51.93 -0.30 0.40 16 40 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 41 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -37.69 331.22 -7.77 -45.46 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.73 Total: -0.83 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.15 Total: 9.73 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.35 Total: -50.14 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.51 Total: -26.73 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.69 -7.77 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.097 kcal (2) G-P(sol) polarization free energy of solvation -37.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds