Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21273 * 119.99795 * 2 1 4 4 N 1.34771 * 119.99603 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.63602 * 355.64332 * 4 2 1 6 6 C 1.53187 * 108.77616 * 233.62884 * 5 4 2 7 7 C 1.53037 * 109.31150 * 305.36050 * 6 5 4 8 8 C 1.53041 * 109.54071 * 61.36658 * 7 6 5 9 9 C 1.46924 * 120.62961 * 175.66081 * 4 2 1 10 10 H 1.09008 * 109.58540 * 246.16171 * 9 4 2 11 11 C 1.50706 * 109.58574 * 6.44174 * 9 4 2 12 12 O 1.21276 * 120.00095 * 66.59731 * 11 9 4 13 13 N 1.34779 * 119.99856 * 246.59255 * 11 9 4 14 14 C 1.46497 * 120.00097 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99716 * 179.97438 * 13 11 9 16 16 H 1.08993 * 109.47182 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.46675 * 120.00431 * 15 13 11 18 18 C 1.50697 * 109.47324 * 240.00087 * 15 13 11 19 19 H 1.08002 * 119.99889 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00441 * 180.02562 * 18 15 13 21 21 N 1.31517 * 119.99486 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00200 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47097 * 90.00260 * 22 20 18 24 24 H 1.48500 * 109.46916 * 209.99798 * 22 20 18 25 25 H 1.48500 * 109.47204 * 330.00208 * 22 20 18 26 26 H 1.08992 * 109.47701 * 270.00556 * 1 2 3 27 27 H 1.09005 * 109.46746 * 30.01083 * 1 2 3 28 28 H 1.08993 * 109.46962 * 150.00043 * 1 2 3 29 29 H 1.09006 * 109.58266 * 353.41577 * 5 4 2 30 30 H 1.08994 * 109.58693 * 113.83745 * 5 4 2 31 31 H 1.09001 * 109.49920 * 65.30909 * 6 5 4 32 32 H 1.08997 * 109.49715 * 185.40920 * 6 5 4 33 33 H 1.08997 * 109.46273 * 301.34303 * 7 6 5 34 34 H 1.09008 * 109.45101 * 181.37426 * 7 6 5 35 35 H 1.08999 * 109.49971 * 178.68342 * 8 7 6 36 36 H 1.09002 * 109.49529 * 58.58078 * 8 7 6 37 37 H 1.08999 * 109.47239 * 89.99774 * 14 13 11 38 38 H 1.08998 * 109.47097 * 209.99863 * 14 13 11 39 39 H 1.09002 * 109.47489 * 329.99614 * 14 13 11 40 40 H 1.08993 * 109.47151 * 60.00183 * 17 15 13 41 41 H 1.09006 * 109.46868 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47276 * 299.99601 * 17 15 13 43 43 H 0.96994 * 119.99782 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4634 -2.4458 0.0971 6 6 2.0480 -3.2524 1.2609 7 6 3.5599 -3.3930 1.0702 8 6 4.2070 -2.0061 1.0707 9 6 3.6468 -1.1853 -0.0951 10 1 3.9458 -1.6405 -1.0394 11 6 4.1752 0.2243 -0.0242 12 8 4.0597 0.8644 0.9994 13 7 4.7761 0.7736 -1.0983 14 6 4.9152 0.0006 -2.3349 15 6 5.2892 2.1441 -1.0295 16 1 5.0956 2.5552 -0.0388 17 6 6.7963 2.1382 -1.2932 18 6 4.6008 2.9910 -2.0687 19 1 3.8553 2.5523 -2.7154 20 6 4.9226 4.3258 -2.1938 21 7 5.8308 4.8598 -1.4066 22 14 4.0688 5.3757 -3.4815 23 1 2.8462 5.9812 -2.8952 24 1 4.9876 6.4523 -3.9309 25 1 3.6939 4.5283 -4.6419 26 1 -0.3634 0.0001 1.0275 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8899 -0.5138 29 1 0.4050 -2.2581 0.2778 30 1 1.5844 -3.0037 -0.8314 31 1 1.8461 -2.7359 2.1992 32 1 1.5907 -4.2416 1.2838 33 1 3.7617 -3.8875 0.1201 34 1 3.9747 -3.9875 1.8843 35 1 5.2864 -2.1082 0.9583 36 1 3.9847 -1.5013 2.0109 37 1 4.0425 0.1656 -2.9667 38 1 5.8127 0.3204 -2.8643 39 1 4.9940 -1.0596 -2.0939 40 1 6.9902 1.7269 -2.2837 41 1 7.1782 3.1578 -1.2415 42 1 7.2943 1.5256 -0.5415 43 1 6.0570 5.7989 -1.4944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339291386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -79.141760 kcal Electronic energy + Delta-G solvation = -24295.143680 eV Core-core repulsion = 20954.044626 eV Total energy + Delta-G solvation = -3341.099054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89976 -39.66154 -38.29218 -36.95403 -34.79053 -34.03102 -32.77436 -31.04197 -30.28555 -27.58722 -27.28663 -26.45203 -24.86190 -22.85873 -21.99141 -20.53467 -19.44612 -18.59570 -18.05874 -17.61978 -17.10169 -16.91085 -16.27621 -15.99550 -15.53518 -15.18059 -14.92573 -14.80053 -14.46948 -14.27960 -14.24611 -14.01283 -13.48812 -13.47212 -13.15449 -13.09560 -12.95092 -12.83199 -12.70112 -12.62572 -12.31684 -12.16916 -12.10468 -11.97177 -11.69587 -11.56393 -11.17908 -10.58500 -10.48478 -10.25901 -9.61763 -9.16006 -8.12951 -6.27947 1.34603 1.38474 1.47652 1.65380 1.72699 2.33644 2.48173 2.53261 3.13453 3.55620 3.81967 3.86721 3.96156 3.99725 4.14092 4.24336 4.41845 4.43260 4.52245 4.57143 4.67453 4.73080 4.75655 4.85806 4.86611 4.90695 4.98141 4.99164 5.06793 5.12443 5.16683 5.23078 5.46643 5.48143 5.54935 5.66366 5.73321 6.12687 6.21208 6.45078 6.79019 6.98046 7.28540 7.38589 7.75193 8.91530 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.005769 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.830958 B = 4852.240255 C = 5495.917801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.471 3.529 3 O -0.558 6.558 4 N -0.605 5.605 5 C 0.100 3.900 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.119 4.119 9 C 0.125 3.875 10 H 0.115 0.885 11 C 0.518 3.482 12 O -0.596 6.596 13 N -0.606 5.606 14 C 0.086 3.914 15 C 0.272 3.728 16 H -0.006 1.006 17 C -0.130 4.130 18 C -0.523 4.523 19 H 0.047 0.953 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.966 3.034 23 H -0.286 1.286 24 H -0.273 1.273 25 H -0.262 1.262 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 -23.056 -0.562 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.261 3.739 3 O -0.435 6.435 4 N -0.342 5.342 5 C -0.020 4.020 6 C -0.172 4.172 7 C -0.146 4.146 8 C -0.158 4.158 9 C 0.019 3.981 10 H 0.133 0.867 11 C 0.307 3.693 12 O -0.477 6.477 13 N -0.338 5.338 14 C -0.056 4.056 15 C 0.170 3.830 16 H 0.012 0.988 17 C -0.189 4.189 18 C -0.562 4.562 19 H 0.066 0.934 20 C -0.190 4.190 21 N -0.561 5.561 22 Si 0.790 3.210 23 H -0.213 1.213 24 H -0.198 1.198 25 H -0.186 1.186 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.044 -21.994 -0.025 23.781 hybrid contribution -0.060 1.539 -0.212 1.555 sum -9.104 -20.455 -0.236 22.391 Atomic orbital electron populations 1.21902 0.87725 1.06038 1.05807 1.22058 0.92933 0.83261 0.75624 1.91016 1.69860 1.33198 1.49426 1.48267 1.04513 1.07688 1.73719 1.22239 0.97454 0.81817 1.00461 1.21965 0.95770 1.01691 0.97743 1.21523 0.95483 0.93524 1.04118 1.21822 1.00745 0.97147 0.96088 1.21396 0.82365 0.92291 1.02094 0.86716 1.20609 0.76669 0.88775 0.83212 1.90561 1.58884 1.64445 1.33779 1.48026 1.58007 1.15237 1.12513 1.21762 1.01854 0.95718 0.86268 1.18313 0.91189 0.78289 0.95250 0.98807 1.21867 0.96865 1.01643 0.98486 1.21473 1.21572 0.95161 1.17963 0.93430 1.25769 0.95895 0.98856 0.98444 1.70035 1.32977 1.13241 1.39864 0.85454 0.78004 0.78387 0.79119 1.21276 1.19849 1.18590 0.87652 0.90215 0.85926 0.86895 0.88470 0.93140 0.86866 0.89240 0.89946 0.90504 0.93937 0.94234 0.90927 0.88542 0.93164 0.91536 0.96153 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.33 71.24 0.66 -2.76 16 2 C 0.47 16.77 7.68 87.66 0.67 17.44 16 3 O -0.56 -29.19 12.65 20.68 0.26 -28.93 16 4 N -0.60 -16.71 2.97 -799.18 -2.38 -19.09 16 5 C 0.10 1.37 6.16 86.36 0.53 1.91 16 6 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 7 C -0.11 -1.59 5.88 30.62 0.18 -1.41 16 8 C -0.12 -3.12 5.29 30.67 0.16 -2.95 16 9 C 0.13 3.95 2.97 44.23 0.13 4.08 16 10 H 0.12 2.90 5.35 -2.38 -0.01 2.88 16 11 C 0.52 24.60 4.22 87.66 0.37 24.97 16 12 O -0.60 -35.30 13.88 20.67 0.29 -35.02 16 13 N -0.61 -29.43 2.75 -826.80 -2.28 -31.71 16 14 C 0.09 3.11 9.37 127.77 1.20 4.30 16 15 C 0.27 16.04 2.64 44.24 0.12 16.16 16 16 H -0.01 -0.43 6.90 -2.39 -0.02 -0.45 16 17 C -0.13 -6.88 8.95 71.98 0.64 -6.24 16 18 C -0.52 -32.03 8.37 25.60 0.21 -31.82 16 19 H 0.05 2.91 7.64 -2.91 -0.02 2.89 16 20 C 0.01 0.52 5.30 84.65 0.45 0.97 16 21 N -0.92 -57.82 11.32 21.45 0.24 -57.57 16 22 Si 0.97 47.22 29.54 68.60 2.03 49.25 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.12 1.51 6.41 -2.39 -0.02 1.50 16 29 H 0.11 1.00 5.68 -2.38 -0.01 0.99 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.41 7.86 -2.39 -0.02 1.39 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.58 6.43 -2.39 -0.02 2.56 16 39 H 0.10 2.48 5.82 -2.39 -0.01 2.47 16 40 H 0.05 2.38 6.66 -2.39 -0.02 2.36 16 41 H 0.07 3.87 6.07 -2.38 -0.01 3.85 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -93.88 331.22 4.69 -89.20 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.00 Total: 10.66 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.52 Total: 23.20 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.41 Total: -108.37 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: 0.55 Total: -63.94 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -93.88 4.69 -89.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.055 kcal (2) G-P(sol) polarization free energy of solvation -93.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds