Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 120.00170 * 2 1 4 4 N 1.34778 * 119.99786 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.62930 * 4.14995 * 4 2 1 6 6 C 1.53189 * 108.76277 * 126.40297 * 5 4 2 7 7 C 1.53038 * 109.31390 * 54.65372 * 6 5 4 8 8 C 1.53034 * 109.52724 * 298.61341 * 7 6 5 9 9 C 1.46924 * 120.63092 * 184.16661 * 4 2 1 10 10 H 1.08994 * 109.58329 * 113.80207 * 9 4 2 11 11 C 1.50701 * 109.58574 * 353.38037 * 9 4 2 12 12 O 1.21281 * 119.99807 * 292.65880 * 11 9 4 13 13 N 1.34779 * 119.99988 * 112.66322 * 11 9 4 14 14 C 1.46494 * 120.00009 * 359.97438 * 13 11 9 15 15 C 1.46496 * 119.99731 * 179.97438 * 13 11 9 16 16 H 1.09004 * 109.47557 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.47438 * 119.99776 * 15 13 11 18 18 C 1.50701 * 109.47210 * 239.99761 * 15 13 11 19 19 H 1.08004 * 119.99859 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00484 * 180.02562 * 18 15 13 21 21 N 1.31519 * 119.99772 * 359.97438 * 20 18 15 22 22 Si 1.86790 * 120.00182 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47102 * 90.00324 * 22 20 18 24 24 H 1.48503 * 109.47189 * 209.99805 * 22 20 18 25 25 H 1.48496 * 109.47355 * 329.99968 * 22 20 18 26 26 H 1.08999 * 109.47059 * 240.00637 * 1 2 3 27 27 H 1.09004 * 109.46819 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47384 * 119.99809 * 1 2 3 29 29 H 1.08999 * 109.58225 * 246.19523 * 5 4 2 30 30 H 1.08998 * 109.58627 * 6.62251 * 5 4 2 31 31 H 1.09004 * 109.51156 * 294.69596 * 6 5 4 32 32 H 1.09004 * 109.48857 * 174.59990 * 6 5 4 33 33 H 1.09002 * 109.46382 * 178.59759 * 7 6 5 34 34 H 1.09001 * 109.46132 * 58.63088 * 7 6 5 35 35 H 1.09003 * 109.50154 * 181.32496 * 8 7 6 36 36 H 1.09001 * 109.49969 * 301.41940 * 8 7 6 37 37 H 1.08992 * 109.47105 * 90.00153 * 14 13 11 38 38 H 1.09002 * 109.46993 * 210.00389 * 14 13 11 39 39 H 1.09003 * 109.47292 * 329.99920 * 14 13 11 40 40 H 1.09001 * 109.47255 * 59.99394 * 17 15 13 41 41 H 1.09003 * 109.47692 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47236 * 300.00193 * 17 15 13 43 43 H 0.96996 * 120.00150 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4631 -2.4460 -0.0904 6 6 2.0447 -3.2560 -1.2534 7 6 3.5570 -3.3963 -1.0660 8 6 4.2041 -2.0095 -1.0724 9 6 3.6471 -1.1851 0.0924 10 1 3.9485 -1.6374 1.0372 11 6 4.1755 0.2240 0.0123 12 8 4.0695 0.8537 -1.0188 13 7 4.7660 0.7843 1.0865 14 6 4.8937 0.0239 2.3321 15 6 5.2801 2.1539 1.0084 16 1 5.0964 2.5548 0.0116 17 6 4.5711 3.0249 2.0474 18 6 6.7620 2.1506 1.2827 19 1 7.2699 1.2213 1.4945 20 6 7.4692 3.3340 1.2644 21 7 6.8506 4.4658 1.0070 22 14 9.3057 3.3299 1.6051 23 1 10.0455 3.1566 0.3292 24 1 9.6957 4.6184 2.2322 25 1 9.6361 2.2118 2.5248 26 1 -0.3633 -0.5137 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 1.5864 -3.0012 0.8395 30 1 0.4042 -2.2588 -0.2690 31 1 1.8406 -2.7422 -2.1928 32 1 1.5871 -4.2451 -1.2723 33 1 3.9699 -3.9934 -1.8792 34 1 3.7611 -3.8879 -0.1148 35 1 5.2838 -2.1112 -0.9626 36 1 3.9795 -1.5075 -2.0135 37 1 5.8357 -0.5243 2.3281 38 1 4.8755 0.7091 3.1796 39 1 4.0646 -0.6790 2.4153 40 1 4.7551 2.6239 3.0442 41 1 4.9533 4.0440 1.9891 42 1 3.4993 3.0273 1.8491 43 1 7.3481 5.2983 0.9938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339291387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -57.232934 kcal Electronic energy + Delta-G solvation = -24218.076880 eV Core-core repulsion = 20877.927864 eV Total energy + Delta-G solvation = -3340.149016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59107 -38.01313 -37.16247 -35.00145 -32.96435 -32.75984 -31.50861 -29.37390 -29.09766 -25.93752 -25.37778 -25.03343 -23.77201 -21.13919 -21.00185 -19.12122 -18.00807 -16.82766 -16.35863 -16.19909 -15.64822 -15.15416 -15.03081 -14.54122 -14.14985 -13.92913 -13.80753 -13.56875 -13.17408 -12.87131 -12.60453 -12.40487 -12.21145 -12.14227 -11.91702 -11.63828 -11.40197 -11.27063 -11.03194 -10.92831 -10.87026 -10.72938 -10.68454 -10.47078 -10.09731 -10.00858 -9.17325 -8.93916 -8.64648 -8.44451 -8.25089 -7.27225 -5.92870 -4.00646 2.87755 2.89796 3.34269 3.40128 3.42194 3.97208 4.08516 4.49518 4.61860 4.67205 4.77934 4.91434 5.09148 5.19428 5.19700 5.26732 5.32980 5.37019 5.42164 5.44571 5.63983 5.72748 5.80030 5.83372 5.88317 5.97277 6.02348 6.19228 6.35746 6.40901 6.57994 6.98520 7.10323 7.31366 7.52393 7.69586 7.74949 7.92346 8.21763 8.39457 8.45913 8.81667 9.01370 9.42796 9.66559 11.12052 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025308 B = 0.005316 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.122395 B = 5265.727251 C = 5861.571907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.492 3.508 3 O -0.484 6.484 4 N -0.609 5.609 5 C 0.111 3.889 6 C -0.137 4.137 7 C -0.117 4.117 8 C -0.122 4.122 9 C 0.119 3.881 10 H 0.087 0.913 11 C 0.530 3.470 12 O -0.536 6.536 13 N -0.593 5.593 14 C 0.089 3.911 15 C 0.268 3.732 16 H 0.062 0.938 17 C -0.143 4.143 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.014 0.986 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 -17.564 0.368 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.280 3.720 3 O -0.356 6.356 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.175 4.175 7 C -0.154 4.154 8 C -0.160 4.160 9 C 0.013 3.987 10 H 0.104 0.896 11 C 0.316 3.684 12 O -0.413 6.413 13 N -0.325 5.325 14 C -0.056 4.056 15 C 0.167 3.833 16 H 0.079 0.921 17 C -0.201 4.201 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.034 0.966 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.929 -16.378 -0.181 20.263 hybrid contribution 1.006 -0.190 0.362 1.086 sum -10.923 -16.568 0.181 19.845 Atomic orbital electron populations 1.21901 0.92071 1.05251 1.03420 1.20932 0.90584 0.83577 0.76926 1.90961 1.68268 1.30356 1.46015 1.48043 1.05359 1.06207 1.75087 1.21713 0.96455 0.84306 0.98676 1.21940 0.96472 1.00063 0.99016 1.21507 0.94983 0.96799 1.02143 1.21793 1.00361 0.94895 0.98986 1.21445 0.80568 0.96952 0.99762 0.89567 1.19452 0.78024 0.86324 0.84579 1.90611 1.57430 1.62655 1.30641 1.47988 1.57738 1.16734 1.10050 1.21515 0.99111 0.96024 0.88922 1.18769 0.91645 0.75298 0.97543 0.92063 1.22027 0.96593 1.03765 0.97725 1.21399 0.92951 0.93375 1.48432 0.92518 1.24900 0.98356 0.95440 0.95217 1.69909 1.35587 0.98088 1.49068 0.86531 0.85435 0.77254 0.78332 1.20721 1.21222 1.20019 0.89799 0.89122 0.89856 0.91425 0.89589 0.91292 0.90779 0.91412 0.91748 0.90516 0.90281 0.93693 0.91094 0.93594 0.95707 0.89228 0.96647 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 8.70 36.01 0.31 -1.47 16 2 C 0.49 8.15 7.69 -10.98 -0.08 8.06 16 3 O -0.48 -11.12 12.69 -19.11 -0.24 -11.36 16 4 N -0.61 -8.60 2.97 -166.54 -0.49 -9.10 16 5 C 0.11 0.98 6.33 -3.71 -0.02 0.96 16 6 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 7 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 8 C -0.12 -1.72 5.28 -26.62 -0.14 -1.86 16 9 C 0.12 1.95 2.84 -68.75 -0.20 1.75 16 10 H 0.09 1.25 5.60 -51.93 -0.29 0.95 16 11 C 0.53 12.10 4.17 -10.98 -0.05 12.06 16 12 O -0.54 -14.69 13.93 -19.11 -0.27 -14.96 16 13 N -0.59 -13.99 2.75 -175.27 -0.48 -14.47 16 14 C 0.09 1.65 9.21 59.84 0.55 2.20 16 15 C 0.27 7.49 2.64 -69.08 -0.18 7.31 16 16 H 0.06 2.02 6.90 -51.93 -0.36 1.66 16 17 C -0.14 -3.79 8.95 37.16 0.33 -3.46 16 18 C -0.52 -15.01 8.37 -34.44 -0.29 -15.29 16 19 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 20 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 21 N -0.89 -26.58 11.32 55.43 0.63 -25.96 16 22 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 28 H 0.08 0.69 7.52 -51.93 -0.39 0.30 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.57 5.96 -51.93 -0.31 0.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.35 6.43 -51.93 -0.33 1.02 16 39 H 0.05 0.71 6.08 -51.93 -0.32 0.39 16 40 H 0.02 0.60 6.66 -51.93 -0.35 0.25 16 41 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -37.14 332.31 -7.87 -45.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.83 Total: -0.47 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.18 Total: 9.39 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.35 Total: -49.53 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.51 Total: -26.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.14 -7.87 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.217 kcal (2) G-P(sol) polarization free energy of solvation -37.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds