Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 120.00170 * 2 1 4 4 N 1.34778 * 119.99786 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.62930 * 4.14995 * 4 2 1 6 6 C 1.53189 * 108.76277 * 126.40297 * 5 4 2 7 7 C 1.53038 * 109.31390 * 54.65372 * 6 5 4 8 8 C 1.53034 * 109.52724 * 298.61341 * 7 6 5 9 9 C 1.46924 * 120.63092 * 184.16661 * 4 2 1 10 10 H 1.08994 * 109.58329 * 113.80207 * 9 4 2 11 11 C 1.50701 * 109.58574 * 353.38037 * 9 4 2 12 12 O 1.21281 * 119.99807 * 292.65880 * 11 9 4 13 13 N 1.34779 * 119.99988 * 112.66322 * 11 9 4 14 14 C 1.46494 * 120.00009 * 359.97438 * 13 11 9 15 15 C 1.46496 * 119.99731 * 179.97438 * 13 11 9 16 16 H 1.09004 * 109.47557 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.47438 * 119.99776 * 15 13 11 18 18 C 1.50701 * 109.47210 * 239.99761 * 15 13 11 19 19 H 1.08004 * 119.99859 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00484 * 180.02562 * 18 15 13 21 21 N 1.31519 * 119.99772 * 359.97438 * 20 18 15 22 22 Si 1.86790 * 120.00182 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47102 * 90.00324 * 22 20 18 24 24 H 1.48503 * 109.47189 * 209.99805 * 22 20 18 25 25 H 1.48496 * 109.47355 * 329.99968 * 22 20 18 26 26 H 1.08999 * 109.47059 * 240.00637 * 1 2 3 27 27 H 1.09004 * 109.46819 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47384 * 119.99809 * 1 2 3 29 29 H 1.08999 * 109.58225 * 246.19523 * 5 4 2 30 30 H 1.08998 * 109.58627 * 6.62251 * 5 4 2 31 31 H 1.09004 * 109.51156 * 294.69596 * 6 5 4 32 32 H 1.09004 * 109.48857 * 174.59990 * 6 5 4 33 33 H 1.09002 * 109.46382 * 178.59759 * 7 6 5 34 34 H 1.09001 * 109.46132 * 58.63088 * 7 6 5 35 35 H 1.09003 * 109.50154 * 181.32496 * 8 7 6 36 36 H 1.09001 * 109.49969 * 301.41940 * 8 7 6 37 37 H 1.08992 * 109.47105 * 90.00153 * 14 13 11 38 38 H 1.09002 * 109.46993 * 210.00389 * 14 13 11 39 39 H 1.09003 * 109.47292 * 329.99920 * 14 13 11 40 40 H 1.09001 * 109.47255 * 59.99394 * 17 15 13 41 41 H 1.09003 * 109.47692 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47236 * 300.00193 * 17 15 13 43 43 H 0.96996 * 120.00150 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4631 -2.4460 -0.0904 6 6 2.0447 -3.2560 -1.2534 7 6 3.5570 -3.3963 -1.0660 8 6 4.2041 -2.0095 -1.0724 9 6 3.6471 -1.1851 0.0924 10 1 3.9485 -1.6374 1.0372 11 6 4.1755 0.2240 0.0123 12 8 4.0695 0.8537 -1.0188 13 7 4.7660 0.7843 1.0865 14 6 4.8937 0.0239 2.3321 15 6 5.2801 2.1539 1.0084 16 1 5.0964 2.5548 0.0116 17 6 4.5711 3.0249 2.0474 18 6 6.7620 2.1506 1.2827 19 1 7.2699 1.2213 1.4945 20 6 7.4692 3.3340 1.2644 21 7 6.8506 4.4658 1.0070 22 14 9.3057 3.3299 1.6051 23 1 10.0455 3.1566 0.3292 24 1 9.6957 4.6184 2.2322 25 1 9.6361 2.2118 2.5248 26 1 -0.3633 -0.5137 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 1.5864 -3.0012 0.8395 30 1 0.4042 -2.2588 -0.2690 31 1 1.8406 -2.7422 -2.1928 32 1 1.5871 -4.2451 -1.2723 33 1 3.9699 -3.9934 -1.8792 34 1 3.7611 -3.8879 -0.1148 35 1 5.2838 -2.1112 -0.9626 36 1 3.9795 -1.5075 -2.0135 37 1 5.8357 -0.5243 2.3281 38 1 4.8755 0.7091 3.1796 39 1 4.0646 -0.6790 2.4153 40 1 4.7551 2.6239 3.0442 41 1 4.9533 4.0440 1.9891 42 1 3.4993 3.0273 1.8491 43 1 7.3481 5.2983 0.9938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339291387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -83.168317 kcal Electronic energy + Delta-G solvation = -24219.201522 eV Core-core repulsion = 20877.927864 eV Total energy + Delta-G solvation = -3341.273658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91591 -39.65829 -38.31035 -36.96097 -34.79920 -34.03673 -32.77433 -31.04785 -30.29313 -27.59836 -27.29578 -26.44740 -24.88452 -22.85760 -22.01988 -20.54360 -19.44885 -18.52383 -18.17579 -17.61359 -17.04943 -16.88086 -16.29354 -16.00697 -15.63008 -15.15096 -14.91273 -14.81566 -14.54660 -14.27933 -14.12089 -13.87786 -13.61541 -13.43013 -13.16513 -13.10910 -12.95369 -12.87721 -12.72182 -12.64092 -12.34264 -12.18455 -12.08557 -11.98012 -11.71040 -11.58487 -11.17116 -10.58993 -10.52629 -10.28326 -9.62854 -9.17513 -8.13224 -6.31896 1.38952 1.41573 1.51978 1.66633 1.69812 2.32158 2.45928 2.54473 3.12878 3.54672 3.83685 3.85086 3.94385 4.03365 4.13513 4.23716 4.39067 4.43760 4.52203 4.63567 4.65487 4.70164 4.75049 4.83020 4.89238 4.89906 4.97093 4.98339 5.09310 5.11760 5.16084 5.22413 5.45424 5.46828 5.52711 5.62456 5.73820 6.08325 6.18358 6.44381 6.78162 6.97690 7.25509 7.36635 7.74100 8.91328 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025308 B = 0.005316 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.122395 B = 5265.727251 C = 5861.571907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.475 3.525 3 O -0.564 6.564 4 N -0.605 5.605 5 C 0.102 3.898 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.120 4.120 9 C 0.127 3.873 10 H 0.115 0.885 11 C 0.519 3.481 12 O -0.598 6.598 13 N -0.606 5.606 14 C 0.086 3.914 15 C 0.275 3.725 16 H -0.007 1.007 17 C -0.123 4.123 18 C -0.538 4.538 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.922 5.922 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.279 1.279 25 H -0.258 1.258 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.006 0.994 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -21.705 2.063 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.265 3.735 3 O -0.442 6.442 4 N -0.341 5.341 5 C -0.018 4.018 6 C -0.172 4.172 7 C -0.146 4.146 8 C -0.159 4.159 9 C 0.020 3.980 10 H 0.132 0.868 11 C 0.309 3.691 12 O -0.479 6.479 13 N -0.338 5.338 14 C -0.056 4.056 15 C 0.173 3.827 16 H 0.011 0.989 17 C -0.181 4.181 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.561 5.561 22 Si 0.796 3.204 23 H -0.207 1.207 24 H -0.204 1.204 25 H -0.182 1.182 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.025 0.975 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.703 -20.626 1.544 24.273 hybrid contribution 1.178 1.080 -0.231 1.615 sum -11.525 -19.546 1.313 22.729 Atomic orbital electron populations 1.21894 0.87340 1.05495 1.06556 1.22079 0.92976 0.83033 0.75371 1.90940 1.70040 1.33255 1.49940 1.48293 1.04341 1.07873 1.73630 1.22221 0.97405 0.81752 1.00400 1.21972 0.95504 1.01819 0.97921 1.21520 0.95697 0.93375 1.04049 1.21810 1.00546 0.97314 0.96223 1.21333 0.82429 0.92262 1.01929 0.86753 1.20584 0.76679 0.88639 0.83232 1.90560 1.59356 1.64989 1.33001 1.48008 1.57821 1.15624 1.12307 1.21742 1.01480 0.96112 0.86286 1.18270 0.92209 0.78193 0.94062 0.98876 1.21775 0.95609 1.02289 0.98467 1.21631 0.93374 0.93825 1.48788 0.91964 1.25877 1.03642 0.94852 0.94645 1.70079 1.37686 0.98805 1.49576 0.85355 0.78724 0.77999 0.78300 1.20730 1.20430 1.18154 0.86009 0.90545 0.86865 0.88358 0.86704 0.93089 0.86805 0.90130 0.89299 0.91152 0.93947 0.92215 0.91664 0.89791 0.93622 0.91705 0.97482 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.70 71.24 0.62 -2.31 16 2 C 0.48 15.64 7.69 87.66 0.67 16.31 16 3 O -0.56 -27.52 12.69 20.57 0.26 -27.26 16 4 N -0.60 -15.91 2.97 -799.20 -2.38 -18.29 16 5 C 0.10 1.29 6.33 86.36 0.55 1.84 16 6 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 7 C -0.11 -1.69 5.88 30.62 0.18 -1.51 16 8 C -0.12 -3.33 5.28 30.67 0.16 -3.17 16 9 C 0.13 4.05 2.84 44.23 0.13 4.17 16 10 H 0.12 2.95 5.60 -2.39 -0.01 2.94 16 11 C 0.52 24.86 4.17 87.66 0.37 25.22 16 12 O -0.60 -35.67 13.93 20.55 0.29 -35.39 16 13 N -0.61 -29.65 2.75 -826.82 -2.28 -31.93 16 14 C 0.09 3.12 9.21 127.77 1.18 4.30 16 15 C 0.28 16.35 2.64 44.25 0.12 16.47 16 16 H -0.01 -0.49 6.90 -2.39 -0.02 -0.50 16 17 C -0.12 -6.89 8.95 71.98 0.64 -6.25 16 18 C -0.54 -31.85 8.37 25.60 0.21 -31.64 16 19 H 0.06 3.52 7.65 -2.91 -0.02 3.50 16 20 C 0.01 0.51 5.30 84.65 0.45 0.96 16 21 N -0.92 -57.58 11.32 21.45 0.24 -57.34 16 22 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H 0.12 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16 28 H 0.11 1.48 7.52 -2.39 -0.02 1.46 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.84 5.96 -2.39 -0.01 0.83 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.47 7.83 -2.39 -0.02 1.45 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.42 6.43 -2.39 -0.02 2.40 16 39 H 0.08 2.35 6.08 -2.39 -0.01 2.34 16 40 H 0.04 2.29 6.66 -2.39 -0.02 2.28 16 41 H 0.06 3.94 6.07 -2.39 -0.01 3.92 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -92.43 332.31 4.62 -87.82 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.99 Total: 11.90 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 5.46 Total: 22.96 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.41 Total: -107.55 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: 0.55 Total: -62.65 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -92.43 4.62 -87.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.647 kcal (2) G-P(sol) polarization free energy of solvation -92.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds