Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99301 * 2 1 4 4 N 1.34775 * 120.00251 * 180.02562 * 2 1 3 5 5 C 1.46918 * 120.63029 * 354.84096 * 4 2 1 6 6 C 1.53196 * 108.77812 * 126.41628 * 5 4 2 7 7 C 1.53045 * 109.31074 * 54.62928 * 6 5 4 8 8 C 1.53042 * 109.52950 * 298.64452 * 7 6 5 9 9 C 1.46929 * 120.62973 * 174.86495 * 4 2 1 10 10 H 1.08995 * 109.58428 * 113.65625 * 9 4 2 11 11 C 1.50707 * 109.58498 * 353.37048 * 9 4 2 12 12 O 1.21277 * 120.00238 * 310.07098 * 11 9 4 13 13 N 1.34771 * 119.99605 * 130.07305 * 11 9 4 14 14 C 1.46507 * 120.00219 * 359.97438 * 13 11 9 15 15 C 1.46498 * 120.00026 * 179.97438 * 13 11 9 16 16 H 1.09002 * 109.46988 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47340 * 240.00055 * 15 13 11 18 18 C 1.50704 * 109.47403 * 119.99968 * 15 13 11 19 19 H 1.08003 * 119.99881 * 35.39903 * 18 15 13 20 20 C 1.37879 * 120.00041 * 215.40694 * 18 15 13 21 21 N 1.31511 * 119.99935 * 186.55014 * 20 18 15 22 22 Si 1.86798 * 119.99975 * 6.54169 * 20 18 15 23 23 H 1.48500 * 109.46987 * 84.65454 * 22 20 18 24 24 H 1.48499 * 109.46989 * 204.65195 * 22 20 18 25 25 H 1.48499 * 109.47319 * 324.65437 * 22 20 18 26 26 H 1.08997 * 109.46990 * 239.99684 * 1 2 3 27 27 H 1.08998 * 109.47670 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46627 * 120.00020 * 1 2 3 29 29 H 1.08999 * 109.58849 * 6.62481 * 5 4 2 30 30 H 1.08998 * 109.59028 * 246.19887 * 5 4 2 31 31 H 1.09004 * 109.49139 * 294.68174 * 6 5 4 32 32 H 1.09001 * 109.49879 * 174.58798 * 6 5 4 33 33 H 1.09001 * 109.45571 * 58.66524 * 7 6 5 34 34 H 1.09003 * 109.45283 * 178.63108 * 7 6 5 35 35 H 1.08994 * 109.49703 * 181.30879 * 8 7 6 36 36 H 1.08996 * 109.49874 * 301.41237 * 8 7 6 37 37 H 1.09002 * 109.47016 * 90.00209 * 14 13 11 38 38 H 1.09001 * 109.46998 * 209.99787 * 14 13 11 39 39 H 1.08999 * 109.47208 * 330.00242 * 14 13 11 40 40 H 1.09004 * 109.46776 * 299.66292 * 17 15 13 41 41 H 1.08993 * 109.46905 * 59.66085 * 17 15 13 42 42 H 1.09004 * 109.46816 * 179.66801 * 17 15 13 43 43 H 0.97001 * 120.00409 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4649 -2.4450 0.1126 6 6 1.8825 -3.3491 -1.0516 7 6 3.4071 -3.4820 -1.0674 8 6 4.0387 -2.1035 -1.2752 9 6 3.6458 -1.1857 -0.1137 10 1 4.0791 -1.5603 0.8136 11 6 4.1496 0.2095 -0.3796 12 8 3.6547 0.8746 -1.2647 13 7 5.1503 0.7180 0.3663 14 6 5.7479 -0.0853 1.4359 15 6 5.6406 2.0741 0.1076 16 1 5.0799 2.5117 -0.7184 17 6 7.1254 2.0187 -0.2574 18 6 5.4580 2.9185 1.3424 19 1 5.5820 2.4782 2.3208 20 6 5.1325 4.2529 1.2232 21 7 5.0994 5.0197 2.2911 22 14 4.7386 4.9718 -0.4554 23 1 3.3076 4.7334 -0.7725 24 1 5.0062 6.4324 -0.4434 25 1 5.5888 4.3211 -1.4844 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8901 29 1 0.3904 -2.2669 0.0697 30 1 1.7204 -2.9247 1.0574 31 1 1.5457 -2.9110 -1.9912 32 1 1.4326 -4.3340 -0.9269 33 1 3.7452 -3.8971 -0.1180 34 1 3.7053 -4.1444 -1.8802 35 1 5.1236 -2.2020 -1.3097 36 1 3.6815 -1.6773 -2.2127 37 1 6.5832 -0.6599 1.0354 38 1 6.1062 0.5727 2.2276 39 1 4.9992 -0.7664 1.8404 40 1 7.6872 1.5864 0.5707 41 1 7.2581 1.4031 -1.1470 42 1 7.4887 3.0271 -0.4556 43 1 4.8700 5.9585 2.2073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339291389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -74.418885 kcal Electronic energy + Delta-G solvation = -24406.429150 eV Core-core repulsion = 21065.534895 eV Total energy + Delta-G solvation = -3340.894255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92590 -39.68725 -38.28567 -36.95726 -34.72857 -33.98249 -33.03081 -31.57780 -30.29043 -27.60894 -27.29232 -26.44254 -24.83699 -22.78437 -21.96093 -20.47032 -19.41112 -19.29657 -18.14035 -17.71541 -17.01828 -16.84946 -16.32051 -16.02082 -15.60585 -15.11327 -14.93132 -14.78506 -14.62856 -14.29674 -14.20267 -14.16546 -13.91099 -13.54030 -13.26067 -13.16317 -13.12258 -12.94914 -12.75490 -12.72067 -12.37587 -12.27710 -11.98764 -11.81674 -11.69870 -11.55368 -11.29916 -10.79182 -10.51530 -10.20280 -9.58991 -9.11528 -8.40239 -6.40005 1.17478 1.26782 1.36523 1.66508 1.78383 2.24622 2.38607 2.40424 3.03137 3.56160 3.81468 3.88136 3.96980 4.01799 4.14780 4.24435 4.39497 4.43355 4.50241 4.54157 4.60482 4.64957 4.70720 4.72809 4.80820 4.85732 4.92069 4.96147 4.99711 5.11782 5.15127 5.17033 5.23427 5.32844 5.47879 5.56214 5.59629 5.90463 6.18498 6.47878 6.62210 6.88505 7.24998 7.33358 7.69303 8.75823 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.006455 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.584328 B = 4336.518400 C = 4949.623525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.470 3.530 3 O -0.557 6.557 4 N -0.609 5.609 5 C 0.103 3.897 6 C -0.133 4.133 7 C -0.110 4.110 8 C -0.115 4.115 9 C 0.125 3.875 10 H 0.112 0.888 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.604 5.604 14 C 0.080 3.920 15 C 0.227 3.773 16 H 0.029 0.971 17 C -0.135 4.135 18 C -0.509 4.509 19 H 0.051 0.949 20 C 0.031 3.969 21 N -0.935 5.935 22 Si 0.928 3.072 23 H -0.299 1.299 24 H -0.271 1.271 25 H -0.256 1.256 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 -24.219 -4.574 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.260 3.740 3 O -0.435 6.435 4 N -0.346 5.346 5 C -0.018 4.018 6 C -0.171 4.171 7 C -0.147 4.147 8 C -0.154 4.154 9 C 0.018 3.982 10 H 0.129 0.871 11 C 0.298 3.702 12 O -0.457 6.457 13 N -0.336 5.336 14 C -0.062 4.062 15 C 0.124 3.876 16 H 0.047 0.953 17 C -0.194 4.194 18 C -0.548 4.548 19 H 0.069 0.931 20 C -0.168 4.168 21 N -0.575 5.575 22 Si 0.755 3.245 23 H -0.226 1.226 24 H -0.196 1.196 25 H -0.180 1.180 26 H 0.137 0.863 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.375 -23.111 -4.960 24.482 hybrid contribution -0.223 1.413 -0.470 1.506 sum -6.599 -21.698 -5.430 23.320 Atomic orbital electron populations 1.21876 0.88375 1.04966 1.06239 1.21862 0.92650 0.83364 0.76132 1.91060 1.70370 1.33717 1.48312 1.48125 1.05052 1.07477 1.73983 1.22163 0.97934 0.81525 1.00151 1.21966 0.96225 1.00973 0.97972 1.21522 0.95341 0.93844 1.04009 1.21797 1.01914 0.96166 0.95516 1.21361 0.82560 0.92279 1.01973 0.87075 1.20702 0.78691 0.88834 0.81989 1.90589 1.56882 1.62234 1.36006 1.48110 1.35913 1.15722 1.33900 1.21859 0.98771 0.95166 0.90419 1.18983 0.92489 0.80846 0.95255 0.95312 1.22038 0.96527 1.00656 1.00142 1.21351 1.46301 0.94018 0.93121 0.93057 1.25530 0.94563 0.97703 0.99038 1.69979 1.50387 1.06791 1.30345 0.86064 0.78439 0.77692 0.82347 1.22611 1.19611 1.17999 0.86312 0.91196 0.87121 0.87255 0.89089 0.92759 0.87132 0.89533 0.89666 0.89741 0.93595 0.90256 0.92308 0.90229 0.91583 0.93547 0.93473 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.67 71.24 0.62 -3.04 16 2 C 0.47 17.15 7.42 87.66 0.65 17.80 16 3 O -0.56 -29.54 12.31 21.52 0.26 -29.28 16 4 N -0.61 -16.98 2.97 -799.23 -2.38 -19.35 16 5 C 0.10 1.46 6.35 86.37 0.55 2.01 16 6 C -0.13 -1.52 6.08 30.67 0.19 -1.34 16 7 C -0.11 -1.43 5.88 30.62 0.18 -1.25 16 8 C -0.12 -2.68 5.35 30.66 0.16 -2.52 16 9 C 0.12 3.79 2.96 44.22 0.13 3.93 16 10 H 0.11 2.82 5.36 -2.39 -0.01 2.81 16 11 C 0.51 22.93 4.78 87.66 0.42 23.35 16 12 O -0.58 -32.11 13.09 21.53 0.28 -31.83 16 13 N -0.60 -27.57 2.75 -826.77 -2.28 -29.85 16 14 C 0.08 2.72 9.22 127.77 1.18 3.90 16 15 C 0.23 12.14 2.34 44.25 0.10 12.24 16 16 H 0.03 1.75 3.96 -2.39 -0.01 1.74 16 17 C -0.13 -6.00 9.17 71.98 0.66 -5.34 16 18 C -0.51 -31.15 8.72 25.60 0.22 -30.93 16 19 H 0.05 3.31 6.82 -2.91 -0.02 3.29 16 20 C 0.03 1.94 5.47 84.66 0.46 2.41 16 21 N -0.93 -61.40 13.96 21.45 0.30 -61.10 16 22 Si 0.93 52.37 27.03 68.60 1.85 54.23 16 23 H -0.30 -18.18 7.11 99.48 0.71 -17.47 16 24 H -0.27 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.26 -13.81 6.76 99.48 0.67 -13.14 16 26 H 0.12 1.87 7.73 -2.39 -0.02 1.85 16 27 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 28 H 0.11 1.91 7.90 -2.38 -0.02 1.89 16 29 H 0.11 1.07 5.93 -2.39 -0.01 1.05 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.26 6.56 -2.39 -0.02 2.24 16 39 H 0.08 2.24 5.78 -2.39 -0.01 2.23 16 40 H 0.07 2.65 7.68 -2.39 -0.02 2.63 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -94.21 331.07 4.53 -89.68 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.96 Total: 6.28 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 5.52 Total: 21.22 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.35 Total: -110.31 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: 0.55 Total: -61.11 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 1.85 Total: 54.23 kcal Total: -94.21 4.53 -89.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.260 kcal (2) G-P(sol) polarization free energy of solvation -94.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds