Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00118 * 2 1 4 4 N 1.34774 * 120.00270 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.63012 * 5.57154 * 4 2 1 6 6 C 1.53189 * 108.77768 * 233.63049 * 5 4 2 7 7 C 1.53041 * 109.30856 * 305.36163 * 6 5 4 8 8 C 1.53036 * 109.53884 * 61.36701 * 7 6 5 9 9 C 1.46920 * 120.63516 * 185.58728 * 4 2 1 10 10 H 1.09000 * 109.71133 * 246.23464 * 9 4 2 11 11 C 1.50701 * 109.58561 * 6.58909 * 9 4 2 12 12 O 1.21281 * 119.99912 * 49.31275 * 11 9 4 13 13 N 1.34778 * 120.00022 * 229.31475 * 11 9 4 14 14 C 1.46499 * 120.00235 * 359.97438 * 13 11 9 15 15 C 1.46499 * 119.99958 * 180.02562 * 13 11 9 16 16 H 1.09002 * 109.47334 * 359.97438 * 15 13 11 17 17 C 1.53010 * 109.46745 * 239.99937 * 15 13 11 18 18 C 1.50691 * 109.47437 * 120.00140 * 15 13 11 19 19 H 1.07998 * 120.00122 * 359.97438 * 18 15 13 20 20 C 1.37880 * 120.00434 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99494 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00270 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46697 * 120.00109 * 22 20 18 25 25 H 1.48503 * 109.47266 * 239.99854 * 22 20 18 26 26 H 1.09001 * 109.46948 * 185.50229 * 1 2 3 27 27 H 1.08997 * 109.47075 * 305.49999 * 1 2 3 28 28 H 1.08998 * 109.46851 * 65.50010 * 1 2 3 29 29 H 1.09001 * 109.58894 * 113.83447 * 5 4 2 30 30 H 1.09004 * 109.58286 * 353.41610 * 5 4 2 31 31 H 1.09000 * 109.49578 * 185.41577 * 6 5 4 32 32 H 1.08998 * 109.50003 * 65.31151 * 6 5 4 33 33 H 1.08999 * 109.46346 * 301.34450 * 7 6 5 34 34 H 1.08997 * 109.45239 * 181.37944 * 7 6 5 35 35 H 1.09006 * 109.49976 * 178.68445 * 8 7 6 36 36 H 1.09001 * 109.49985 * 58.58561 * 8 7 6 37 37 H 1.08994 * 109.47253 * 270.00250 * 14 13 11 38 38 H 1.09007 * 109.46794 * 30.00243 * 14 13 11 39 39 H 1.09000 * 109.47386 * 149.99722 * 14 13 11 40 40 H 1.08994 * 109.47393 * 60.00196 * 17 15 13 41 41 H 1.09001 * 109.46624 * 180.02562 * 17 15 13 42 42 H 1.08995 * 109.47201 * 299.99561 * 17 15 13 43 43 H 0.97001 * 119.99650 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4656 -2.4447 -0.1217 6 6 1.8750 -3.3524 1.0424 7 6 3.3994 -3.4857 1.0683 8 6 4.0300 -2.1082 1.2850 9 6 3.6448 -1.1863 0.1236 10 1 4.0866 -1.5588 -0.8006 11 6 4.1471 0.2079 0.3974 12 8 3.6386 0.8744 1.2739 13 7 5.1612 0.7142 -0.3318 14 6 5.7757 -0.0910 -1.3902 15 6 5.6498 2.0694 -0.0652 16 1 5.0757 2.5087 0.7506 17 6 5.4871 2.9265 -1.3222 18 6 7.1059 2.0120 0.3187 19 1 7.6163 1.0611 0.3603 20 6 7.7866 3.1734 0.6167 21 7 7.1652 4.3313 0.5654 22 14 9.5914 3.1021 1.0932 23 1 10.0527 1.6907 1.0756 24 1 10.3906 3.8957 0.1251 25 1 9.7659 3.6636 2.4568 26 1 -0.3633 -1.0229 0.0985 27 1 -0.3633 0.5968 0.8366 28 1 -0.3633 0.4262 -0.9351 29 1 1.7274 -2.9213 -1.0663 30 1 0.3908 -2.2665 -0.0855 31 1 1.4260 -4.3369 0.9114 32 1 1.5319 -2.9175 1.9811 33 1 3.7441 -3.8977 0.1198 34 1 3.6919 -4.1507 1.8808 35 1 5.1147 -2.2071 1.3266 36 1 3.6665 -1.6849 2.2214 37 1 6.6030 -0.6665 -0.9750 38 1 5.0328 -0.7712 -1.8068 39 1 6.1483 0.5657 -2.1763 40 1 4.4339 2.9681 -1.5998 41 1 5.8511 3.9347 -1.1239 42 1 6.0610 2.4874 -2.1382 43 1 7.6442 5.1485 0.7747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339291390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -40.871696 kcal Electronic energy + Delta-G solvation = -24174.197175 eV Core-core repulsion = 20834.757636 eV Total energy + Delta-G solvation = -3339.439539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57980 -38.00055 -37.12847 -35.00487 -32.94167 -32.77631 -31.53650 -29.31417 -29.08692 -25.96743 -25.36891 -25.05258 -23.76839 -21.16463 -20.96742 -19.10279 -17.96161 -16.96080 -16.39317 -16.24631 -15.53522 -15.10604 -14.98290 -14.58254 -14.14753 -14.02642 -13.92460 -13.57842 -13.14188 -12.89408 -12.65256 -12.43190 -12.22167 -12.03335 -11.81342 -11.49345 -11.40817 -11.26890 -11.02091 -10.94063 -10.83570 -10.70364 -10.66987 -10.49038 -10.11101 -10.04280 -9.09097 -8.86986 -8.65337 -8.37931 -8.21373 -7.24395 -5.94865 -4.02624 2.96592 3.01131 3.31999 3.39298 3.42540 3.90106 4.08729 4.48133 4.58425 4.71282 4.77976 4.92370 5.11082 5.11605 5.18749 5.30166 5.35215 5.36707 5.50068 5.50660 5.66431 5.75942 5.80053 5.86977 5.91838 5.97890 6.02090 6.18455 6.31120 6.40765 6.62644 6.95514 7.05118 7.27360 7.61470 7.66217 7.72530 7.89279 8.19445 8.36761 8.57700 8.77830 8.99613 9.40908 9.64614 11.10124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.005292 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.543664 B = 5289.815033 C = 5896.275098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.490 3.510 3 O -0.482 6.482 4 N -0.610 5.610 5 C 0.107 3.893 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.121 4.121 9 C 0.120 3.880 10 H 0.088 0.912 11 C 0.520 3.480 12 O -0.520 6.520 13 N -0.594 5.594 14 C 0.087 3.913 15 C 0.265 3.735 16 H 0.062 0.938 17 C -0.144 4.144 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.013 0.987 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 -17.384 -3.638 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.278 3.722 3 O -0.354 6.354 4 N -0.349 5.349 5 C -0.016 4.016 6 C -0.176 4.176 7 C -0.154 4.154 8 C -0.160 4.160 9 C 0.014 3.986 10 H 0.105 0.895 11 C 0.305 3.695 12 O -0.396 6.396 13 N -0.327 5.327 14 C -0.057 4.057 15 C 0.165 3.835 16 H 0.080 0.920 17 C -0.203 4.203 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.249 -16.173 -3.144 19.950 hybrid contribution 1.068 -0.181 0.139 1.093 sum -10.181 -16.355 -3.004 19.498 Atomic orbital electron populations 1.21995 0.92615 1.03724 1.04878 1.20758 0.90308 0.83685 0.77463 1.91029 1.68440 1.30953 1.44941 1.47921 1.05646 1.06169 1.75150 1.21831 0.97368 0.83986 0.98411 1.21951 0.96750 0.99562 0.99294 1.21501 0.94998 0.96724 1.02151 1.21785 1.01344 0.94436 0.98428 1.21365 0.81134 0.96446 0.99692 0.89453 1.19552 0.80141 0.86583 0.83199 1.90646 1.56008 1.59903 1.33061 1.48026 1.33395 1.17553 1.33698 1.21568 0.96890 0.95443 0.91849 1.18810 0.93953 0.75851 0.94867 0.91996 1.22048 0.96665 1.03784 0.97754 1.21415 0.95064 0.93165 1.46402 0.92413 1.24908 0.98304 0.95338 0.95398 1.69918 1.36126 0.97746 1.48848 0.86471 0.84971 0.77959 0.78134 1.19890 1.21030 1.21012 0.90503 0.89087 0.89292 0.91524 0.89062 0.90825 0.91286 0.91704 0.91408 0.90356 0.90602 0.93578 0.93330 0.91037 0.96821 0.89098 0.95540 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.08 36.01 0.36 -1.60 16 2 C 0.49 8.41 7.40 -10.99 -0.08 8.33 16 3 O -0.48 -11.35 12.32 -20.14 -0.25 -11.59 16 4 N -0.61 -8.87 2.97 -166.53 -0.49 -9.37 16 5 C 0.11 0.97 6.36 -3.71 -0.02 0.95 16 6 C -0.14 -1.14 6.08 -26.61 -0.16 -1.31 16 7 C -0.12 -1.11 5.88 -26.69 -0.16 -1.26 16 8 C -0.12 -1.69 5.35 -26.61 -0.14 -1.83 16 9 C 0.12 1.97 2.96 -68.75 -0.20 1.76 16 10 H 0.09 1.27 5.36 -51.93 -0.28 0.99 16 11 C 0.52 11.84 4.81 -10.98 -0.05 11.79 16 12 O -0.52 -14.19 13.04 -20.15 -0.26 -14.45 16 13 N -0.59 -13.92 2.75 -175.26 -0.48 -14.40 16 14 C 0.09 1.59 9.41 59.85 0.56 2.15 16 15 C 0.27 7.38 2.64 -69.08 -0.18 7.19 16 16 H 0.06 2.02 6.90 -51.93 -0.36 1.67 16 17 C -0.14 -3.80 8.95 37.16 0.33 -3.47 16 18 C -0.52 -14.87 8.37 -34.44 -0.29 -15.16 16 19 H 0.06 1.61 7.64 -52.49 -0.40 1.21 16 20 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.89 -26.46 11.32 55.43 0.63 -25.83 16 22 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.08 0.60 5.17 -51.93 -0.27 0.33 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.63 5.06 -51.93 -0.26 0.37 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.73 5.78 -51.93 -0.30 0.43 16 39 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 2.59 6.07 -51.93 -0.32 2.27 16 42 H 0.03 0.63 6.66 -51.93 -0.35 0.29 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -37.00 329.79 -7.69 -44.69 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.65 Total: -0.05 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -0.13 Total: 9.24 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.35 Total: -49.60 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.51 Total: -26.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -37.00 -7.69 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.815 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds