Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00118 * 2 1 4 4 N 1.34774 * 120.00270 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.63012 * 5.57154 * 4 2 1 6 6 C 1.53189 * 108.77768 * 233.63049 * 5 4 2 7 7 C 1.53041 * 109.30856 * 305.36163 * 6 5 4 8 8 C 1.53036 * 109.53884 * 61.36701 * 7 6 5 9 9 C 1.46920 * 120.63516 * 185.58728 * 4 2 1 10 10 H 1.09000 * 109.71133 * 246.23464 * 9 4 2 11 11 C 1.50701 * 109.58561 * 6.58909 * 9 4 2 12 12 O 1.21281 * 119.99912 * 49.31275 * 11 9 4 13 13 N 1.34778 * 120.00022 * 229.31475 * 11 9 4 14 14 C 1.46499 * 120.00235 * 359.97438 * 13 11 9 15 15 C 1.46499 * 119.99958 * 180.02562 * 13 11 9 16 16 H 1.09002 * 109.47334 * 359.97438 * 15 13 11 17 17 C 1.53010 * 109.46745 * 239.99937 * 15 13 11 18 18 C 1.50691 * 109.47437 * 120.00140 * 15 13 11 19 19 H 1.07998 * 120.00122 * 359.97438 * 18 15 13 20 20 C 1.37880 * 120.00434 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99494 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00270 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46697 * 120.00109 * 22 20 18 25 25 H 1.48503 * 109.47266 * 239.99854 * 22 20 18 26 26 H 1.09001 * 109.46948 * 185.50229 * 1 2 3 27 27 H 1.08997 * 109.47075 * 305.49999 * 1 2 3 28 28 H 1.08998 * 109.46851 * 65.50010 * 1 2 3 29 29 H 1.09001 * 109.58894 * 113.83447 * 5 4 2 30 30 H 1.09004 * 109.58286 * 353.41610 * 5 4 2 31 31 H 1.09000 * 109.49578 * 185.41577 * 6 5 4 32 32 H 1.08998 * 109.50003 * 65.31151 * 6 5 4 33 33 H 1.08999 * 109.46346 * 301.34450 * 7 6 5 34 34 H 1.08997 * 109.45239 * 181.37944 * 7 6 5 35 35 H 1.09006 * 109.49976 * 178.68445 * 8 7 6 36 36 H 1.09001 * 109.49985 * 58.58561 * 8 7 6 37 37 H 1.08994 * 109.47253 * 270.00250 * 14 13 11 38 38 H 1.09007 * 109.46794 * 30.00243 * 14 13 11 39 39 H 1.09000 * 109.47386 * 149.99722 * 14 13 11 40 40 H 1.08994 * 109.47393 * 60.00196 * 17 15 13 41 41 H 1.09001 * 109.46624 * 180.02562 * 17 15 13 42 42 H 1.08995 * 109.47201 * 299.99561 * 17 15 13 43 43 H 0.97001 * 119.99650 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4656 -2.4447 -0.1217 6 6 1.8750 -3.3524 1.0424 7 6 3.3994 -3.4857 1.0683 8 6 4.0300 -2.1082 1.2850 9 6 3.6448 -1.1863 0.1236 10 1 4.0866 -1.5588 -0.8006 11 6 4.1471 0.2079 0.3974 12 8 3.6386 0.8744 1.2739 13 7 5.1612 0.7142 -0.3318 14 6 5.7757 -0.0910 -1.3902 15 6 5.6498 2.0694 -0.0652 16 1 5.0757 2.5087 0.7506 17 6 5.4871 2.9265 -1.3222 18 6 7.1059 2.0120 0.3187 19 1 7.6163 1.0611 0.3603 20 6 7.7866 3.1734 0.6167 21 7 7.1652 4.3313 0.5654 22 14 9.5914 3.1021 1.0932 23 1 10.0527 1.6907 1.0756 24 1 10.3906 3.8957 0.1251 25 1 9.7659 3.6636 2.4568 26 1 -0.3633 -1.0229 0.0985 27 1 -0.3633 0.5968 0.8366 28 1 -0.3633 0.4262 -0.9351 29 1 1.7274 -2.9213 -1.0663 30 1 0.3908 -2.2665 -0.0855 31 1 1.4260 -4.3369 0.9114 32 1 1.5319 -2.9175 1.9811 33 1 3.7441 -3.8977 0.1198 34 1 3.6919 -4.1507 1.8808 35 1 5.1147 -2.2071 1.3266 36 1 3.6665 -1.6849 2.2214 37 1 6.6030 -0.6665 -0.9750 38 1 5.0328 -0.7712 -1.8068 39 1 6.1483 0.5657 -2.1763 40 1 4.4339 2.9681 -1.5998 41 1 5.8511 3.9347 -1.1239 42 1 6.0610 2.4874 -2.1382 43 1 7.6442 5.1485 0.7747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339291390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = -66.578950 kcal Electronic energy + Delta-G solvation = -24175.311925 eV Core-core repulsion = 20834.757636 eV Total energy + Delta-G solvation = -3340.554290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92644 -39.64123 -38.29156 -36.94822 -34.81185 -34.01800 -32.80358 -31.07309 -30.23542 -27.60302 -27.30755 -26.45773 -24.87154 -22.89423 -21.98117 -20.54611 -19.39018 -18.57252 -18.28164 -17.69829 -17.00453 -16.78270 -16.34077 -15.94185 -15.72344 -15.17120 -15.00439 -14.83279 -14.55504 -14.30780 -14.21260 -13.91281 -13.60086 -13.44895 -13.15761 -12.99778 -12.95912 -12.74574 -12.68036 -12.59888 -12.34795 -12.18998 -12.09821 -11.94945 -11.70477 -11.52416 -11.16632 -10.59593 -10.44915 -10.16327 -9.59579 -9.10393 -8.13931 -6.32403 1.38848 1.40484 1.52853 1.70498 1.76843 2.29563 2.43944 2.53645 3.12361 3.56502 3.79567 3.88414 3.93908 3.96941 4.13963 4.22904 4.32126 4.45074 4.53137 4.62868 4.65983 4.74836 4.76660 4.83375 4.86916 4.91442 4.98901 5.01416 5.07364 5.11221 5.17094 5.24711 5.44841 5.47110 5.54211 5.63033 5.72397 6.06989 6.17215 6.49077 6.77645 6.95250 7.30818 7.37735 7.74532 8.90793 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.005292 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.543664 B = 5289.815033 C = 5896.275098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.473 3.527 3 O -0.562 6.562 4 N -0.608 5.608 5 C 0.098 3.902 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.118 4.118 9 C 0.128 3.872 10 H 0.115 0.885 11 C 0.507 3.493 12 O -0.578 6.578 13 N -0.608 5.608 14 C 0.084 3.916 15 C 0.272 3.728 16 H -0.006 1.006 17 C -0.126 4.126 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.922 5.922 22 Si 0.972 3.028 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.285 1.285 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.006 0.994 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -21.541 -4.999 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.264 3.736 3 O -0.439 6.439 4 N -0.345 5.345 5 C -0.022 4.022 6 C -0.172 4.172 7 C -0.146 4.146 8 C -0.157 4.157 9 C 0.021 3.979 10 H 0.132 0.868 11 C 0.295 3.705 12 O -0.458 6.458 13 N -0.340 5.340 14 C -0.059 4.059 15 C 0.170 3.830 16 H 0.012 0.988 17 C -0.184 4.184 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.562 5.562 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.211 1.211 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.396 -20.438 -4.538 23.836 hybrid contribution 1.037 1.095 0.588 1.618 sum -10.359 -19.343 -3.950 22.295 Atomic orbital electron populations 1.21989 0.88135 1.06524 1.05321 1.21854 0.92644 0.83257 0.75896 1.91004 1.70352 1.33790 1.48770 1.48181 1.04956 1.07752 1.73604 1.22316 0.98325 0.81409 1.00148 1.21980 0.95887 1.01212 0.98159 1.21520 0.95632 0.93480 1.03993 1.21807 1.01586 0.96592 0.95746 1.21297 0.82768 0.92091 1.01716 0.86777 1.20708 0.79035 0.88803 0.81934 1.90601 1.57452 1.62133 1.35596 1.48060 1.34124 1.16564 1.35258 1.21811 0.98282 0.95395 0.90366 1.18320 0.92985 0.78586 0.93133 0.98763 1.21812 0.96276 1.02400 0.97959 1.21633 0.95292 0.93554 1.46888 0.91918 1.25877 1.03355 0.94773 0.95035 1.70084 1.38176 0.98536 1.49371 0.85301 0.78797 0.78635 0.77608 1.18501 1.19790 1.21140 0.86195 0.89766 0.87924 0.88663 0.86482 0.86855 0.92893 0.89310 0.89948 0.90620 0.94009 0.92128 0.89450 0.91509 0.97534 0.91561 0.93344 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.08 71.24 0.72 -2.68 16 2 C 0.47 16.37 7.40 87.66 0.65 17.02 16 3 O -0.56 -28.20 12.32 21.56 0.27 -27.94 16 4 N -0.61 -16.67 2.97 -799.18 -2.38 -19.04 16 5 C 0.10 1.33 6.36 86.36 0.55 1.88 16 6 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 7 C -0.11 -1.64 5.88 30.62 0.18 -1.46 16 8 C -0.12 -3.17 5.35 30.67 0.16 -3.01 16 9 C 0.13 4.08 2.96 44.23 0.13 4.21 16 10 H 0.11 2.96 5.36 -2.39 -0.01 2.95 16 11 C 0.51 24.16 4.81 87.66 0.42 24.58 16 12 O -0.58 -34.23 13.04 21.54 0.28 -33.95 16 13 N -0.61 -29.50 2.75 -826.79 -2.28 -31.78 16 14 C 0.08 2.97 9.41 127.77 1.20 4.18 16 15 C 0.27 16.05 2.64 44.25 0.12 16.16 16 16 H -0.01 -0.40 6.90 -2.39 -0.02 -0.42 16 17 C -0.13 -6.99 8.95 71.99 0.64 -6.35 16 18 C -0.54 -31.46 8.37 25.60 0.21 -31.24 16 19 H 0.06 3.53 7.64 -2.91 -0.02 3.51 16 20 C 0.01 0.49 5.30 84.65 0.45 0.94 16 21 N -0.92 -57.28 11.32 21.45 0.24 -57.04 16 22 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 26 H 0.12 1.39 5.17 -2.39 -0.01 1.37 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.12 0.98 5.06 -2.38 -0.01 0.96 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 2.37 5.78 -2.38 -0.01 2.36 16 39 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 42 H 0.05 2.40 6.66 -2.39 -0.02 2.38 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -91.53 329.79 4.79 -86.74 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.00 Total: 12.88 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 5.63 Total: 22.79 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.41 Total: -107.86 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: 0.55 Total: -61.88 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -91.53 4.79 -86.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.159 kcal (2) G-P(sol) polarization free energy of solvation -91.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds