Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00169 * 2 1 4 4 N 1.34774 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63412 * 174.39034 * 4 2 1 6 6 C 1.53191 * 108.89635 * 126.29726 * 5 4 2 7 7 C 1.53351 * 109.14810 * 54.57935 * 6 5 4 8 8 C 1.52996 * 109.41674 * 178.67567 * 7 6 5 9 9 N 1.46502 * 109.47006 * 295.12633 * 8 7 6 10 10 C 1.34783 * 119.99541 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00207 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99420 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47303 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99364 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00340 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47248 * 89.99820 * 18 16 14 20 20 H 1.48501 * 109.47413 * 210.00098 * 18 16 14 21 21 H 1.48510 * 109.46735 * 330.00232 * 18 16 14 22 22 C 1.53042 * 109.60892 * 298.71417 * 7 6 5 23 23 C 1.46929 * 120.63138 * 354.36963 * 4 2 1 24 24 H 1.08994 * 109.47451 * 184.87589 * 1 2 3 25 25 H 1.09003 * 109.47092 * 304.87114 * 1 2 3 26 26 H 1.09002 * 109.47411 * 64.86950 * 1 2 3 27 27 H 1.09006 * 109.58587 * 246.16211 * 5 4 2 28 28 H 1.09002 * 109.58306 * 6.43800 * 5 4 2 29 29 H 1.09002 * 109.49550 * 174.65800 * 6 5 4 30 30 H 1.09000 * 109.49262 * 294.75802 * 6 5 4 31 31 H 1.09007 * 109.42303 * 58.74836 * 7 6 5 32 32 H 1.08996 * 109.47294 * 55.13125 * 8 7 6 33 33 H 1.09006 * 109.47016 * 175.13045 * 8 7 6 34 34 H 0.96999 * 120.00422 * 0.02562 * 9 8 7 35 35 H 1.08996 * 109.47676 * 300.00236 * 12 10 9 36 36 H 1.09006 * 109.46837 * 60.00280 * 12 10 9 37 37 H 1.09009 * 109.47440 * 299.99981 * 13 12 10 38 38 H 1.09004 * 109.47222 * 60.00058 * 13 12 10 39 39 H 0.96999 * 120.00097 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.49582 * 301.42348 * 22 7 6 41 41 H 1.09000 * 109.52410 * 181.34160 * 22 7 6 42 42 H 1.08999 * 109.58492 * 353.41283 * 23 4 2 43 43 H 1.09000 * 109.58923 * 113.70186 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6448 -1.1864 -0.1241 6 6 4.2303 -1.9932 1.0391 7 6 3.5805 -3.3820 1.0653 8 6 4.1848 -4.2049 2.2048 9 7 5.6050 -4.4429 1.9353 10 6 6.3471 -5.1517 2.8092 11 8 5.8391 -5.5927 3.8183 12 6 7.8079 -5.3970 2.5316 13 6 8.4123 -6.2198 3.6712 14 6 9.8733 -6.4647 3.3941 15 1 10.3255 -6.0723 2.4952 16 6 10.6325 -7.1896 4.2880 17 7 10.0818 -7.6670 5.3828 18 14 12.4431 -7.4937 3.9442 19 1 13.2501 -6.3945 4.5320 20 1 12.8518 -8.7864 4.5501 21 1 12.6670 -7.5421 2.4768 22 6 2.0724 -3.2394 1.2835 23 6 1.4655 -2.4446 0.1229 24 1 -0.3634 -1.0239 0.0873 25 1 -0.3633 0.5876 0.8432 26 1 -0.3634 0.4364 -0.9304 27 1 3.9256 -1.6512 -1.0693 28 1 4.0277 -0.1664 -0.0906 29 1 5.3074 -2.0943 0.9059 30 1 4.0259 -1.4786 1.9779 31 1 3.7640 -3.8861 0.1163 32 1 4.0793 -3.6594 3.1425 33 1 3.6642 -5.1596 2.2793 34 1 6.0113 -4.0905 1.1281 35 1 7.9131 -5.9424 1.5938 36 1 8.3289 -4.4425 2.4572 37 1 8.3073 -5.6739 4.6089 38 1 7.8913 -7.1744 3.7462 39 1 10.6158 -8.1773 6.0115 40 1 1.8885 -2.7132 2.2203 41 1 1.6154 -4.2281 1.3257 42 1 0.4108 -2.2550 0.3221 43 1 1.5666 -3.0110 -0.8028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347435620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -92.754986 kcal Electronic energy + Delta-G solvation = -21790.067994 eV Core-core repulsion = 18448.378626 eV Total energy + Delta-G solvation = -3341.689368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59239 -39.23183 -37.88830 -35.15114 -33.43994 -32.80128 -31.98994 -30.95090 -29.77032 -27.57517 -25.54265 -23.69599 -23.42901 -21.49182 -20.94968 -19.74497 -19.19899 -17.56596 -16.82583 -16.28196 -15.98733 -15.69741 -15.59682 -15.32642 -14.67066 -14.43423 -14.22626 -13.99200 -13.76040 -13.60460 -13.27559 -12.95189 -12.76699 -12.46123 -12.31291 -12.16883 -11.88977 -11.63727 -11.24637 -11.14842 -11.05551 -10.92726 -10.78659 -10.59091 -10.11325 -9.95148 -9.66118 -9.17988 -9.06946 -8.98623 -8.77759 -8.31512 -5.95688 -4.00087 2.26308 2.61357 3.26980 3.33614 3.39354 3.41835 3.53279 4.13426 4.25503 4.35464 4.43887 4.47986 4.65281 4.71283 4.87029 4.92205 4.97777 5.10033 5.20838 5.29582 5.34203 5.39177 5.45538 5.46327 5.57764 5.59917 5.67941 5.74396 5.90301 6.05705 6.13405 6.23511 6.24999 6.72648 6.90226 7.00859 7.74815 7.80214 7.86891 7.88706 8.07768 8.39264 8.79251 9.08648 9.63403 11.15269 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042908 B = 0.002472 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.401044 B =11324.268786 C =11711.716958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.613 5.613 5 C 0.109 3.891 6 C -0.130 4.130 7 C -0.099 4.099 8 C 0.125 3.875 9 N -0.744 5.744 10 C 0.509 3.491 11 O -0.535 6.535 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.129 4.129 23 C 0.103 3.897 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 11.914 -14.335 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.348 5.348 5 C -0.013 4.013 6 C -0.169 4.169 7 C -0.118 4.118 8 C 0.001 3.999 9 N -0.399 5.399 10 C 0.297 3.703 11 O -0.411 6.411 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.020 4.020 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.869 12.038 -13.418 27.576 hybrid contribution 1.164 -0.154 -0.489 1.272 sum -19.704 11.884 -13.907 26.887 Atomic orbital electron populations 1.22044 0.91921 1.04629 1.05350 1.20818 0.90655 0.83076 0.75329 1.90721 1.70658 1.31130 1.50187 1.48209 1.07576 1.06223 1.72758 1.21626 0.79162 1.02346 0.98161 1.22053 1.00508 0.95084 0.99212 1.21444 0.95022 0.95877 0.99408 1.21256 0.82083 0.99182 0.97419 1.46216 1.10068 1.57755 1.25870 1.21561 0.89988 0.76329 0.82405 1.90669 1.73858 1.49534 1.27006 1.21862 0.88995 1.02574 1.03586 1.18898 0.94406 0.94924 0.91858 1.21226 0.94715 1.34071 1.06503 0.92611 1.25034 0.98491 0.95791 0.95139 1.70001 1.36048 1.36049 1.10757 0.86585 0.85358 0.77599 0.78359 1.20673 1.21230 1.19899 1.21909 0.94992 1.00984 0.98858 1.21915 0.96867 0.84148 0.99043 0.89821 0.88773 0.88694 0.91361 0.88893 0.90175 0.91107 0.90195 0.91881 0.91757 0.77014 0.90288 0.90294 0.95863 0.95847 0.92956 0.90921 0.89945 0.88892 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 10.11 36.00 0.36 -0.53 16 2 C 0.51 4.73 7.79 -10.99 -0.09 4.64 16 3 O -0.55 -7.57 16.52 5.56 0.09 -7.48 16 4 N -0.61 -4.66 2.97 -172.76 -0.51 -5.17 16 5 C 0.11 0.87 6.43 -3.71 -0.02 0.85 16 6 C -0.13 -1.04 5.27 -26.45 -0.14 -1.18 16 7 C -0.10 -0.73 2.19 -90.42 -0.20 -0.93 16 8 C 0.12 1.40 5.06 -4.04 -0.02 1.38 16 9 N -0.74 -9.84 5.27 -60.29 -0.32 -10.16 16 10 C 0.51 9.65 7.83 -10.98 -0.09 9.56 16 11 O -0.54 -12.63 15.98 5.56 0.09 -12.54 16 12 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.13 -0.75 5.36 -26.61 -0.14 -0.89 16 23 C 0.10 0.49 6.31 -3.71 -0.02 0.47 16 24 H 0.08 0.22 5.14 -51.93 -0.27 -0.05 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.91 7.00 -51.93 -0.36 0.55 16 29 H 0.08 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.04 7.65 -40.82 -0.31 3.73 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.69 8.10 -51.92 -0.42 0.26 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.26 5.14 -51.93 -0.27 -0.01 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -37.21 347.76 -7.77 -44.98 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.04 Total: -2.48 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.04 Total: -2.28 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.10 Total: -42.15 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.21 -7.77 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347435620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.774 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds