Wall clock time and date at job start Tue Mar 31 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00169 * 2 1 4 4 N 1.34774 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63412 * 174.39034 * 4 2 1 6 6 C 1.53191 * 108.89635 * 126.29726 * 5 4 2 7 7 C 1.53351 * 109.14810 * 54.57935 * 6 5 4 8 8 C 1.52996 * 109.41674 * 178.67567 * 7 6 5 9 9 N 1.46502 * 109.47006 * 295.12633 * 8 7 6 10 10 C 1.34783 * 119.99541 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00207 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99420 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47303 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99364 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00340 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47248 * 89.99820 * 18 16 14 20 20 H 1.48501 * 109.47413 * 210.00098 * 18 16 14 21 21 H 1.48510 * 109.46735 * 330.00232 * 18 16 14 22 22 C 1.53042 * 109.60892 * 298.71417 * 7 6 5 23 23 C 1.46929 * 120.63138 * 354.36963 * 4 2 1 24 24 H 1.08994 * 109.47451 * 184.87589 * 1 2 3 25 25 H 1.09003 * 109.47092 * 304.87114 * 1 2 3 26 26 H 1.09002 * 109.47411 * 64.86950 * 1 2 3 27 27 H 1.09006 * 109.58587 * 246.16211 * 5 4 2 28 28 H 1.09002 * 109.58306 * 6.43800 * 5 4 2 29 29 H 1.09002 * 109.49550 * 174.65800 * 6 5 4 30 30 H 1.09000 * 109.49262 * 294.75802 * 6 5 4 31 31 H 1.09007 * 109.42303 * 58.74836 * 7 6 5 32 32 H 1.08996 * 109.47294 * 55.13125 * 8 7 6 33 33 H 1.09006 * 109.47016 * 175.13045 * 8 7 6 34 34 H 0.96999 * 120.00422 * 0.02562 * 9 8 7 35 35 H 1.08996 * 109.47676 * 300.00236 * 12 10 9 36 36 H 1.09006 * 109.46837 * 60.00280 * 12 10 9 37 37 H 1.09009 * 109.47440 * 299.99981 * 13 12 10 38 38 H 1.09004 * 109.47222 * 60.00058 * 13 12 10 39 39 H 0.96999 * 120.00097 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.49582 * 301.42348 * 22 7 6 41 41 H 1.09000 * 109.52410 * 181.34160 * 22 7 6 42 42 H 1.08999 * 109.58492 * 353.41283 * 23 4 2 43 43 H 1.09000 * 109.58923 * 113.70186 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6448 -1.1864 -0.1241 6 6 4.2303 -1.9932 1.0391 7 6 3.5805 -3.3820 1.0653 8 6 4.1848 -4.2049 2.2048 9 7 5.6050 -4.4429 1.9353 10 6 6.3471 -5.1517 2.8092 11 8 5.8391 -5.5927 3.8183 12 6 7.8079 -5.3970 2.5316 13 6 8.4123 -6.2198 3.6712 14 6 9.8733 -6.4647 3.3941 15 1 10.3255 -6.0723 2.4952 16 6 10.6325 -7.1896 4.2880 17 7 10.0818 -7.6670 5.3828 18 14 12.4431 -7.4937 3.9442 19 1 13.2501 -6.3945 4.5320 20 1 12.8518 -8.7864 4.5501 21 1 12.6670 -7.5421 2.4768 22 6 2.0724 -3.2394 1.2835 23 6 1.4655 -2.4446 0.1229 24 1 -0.3634 -1.0239 0.0873 25 1 -0.3633 0.5876 0.8432 26 1 -0.3634 0.4364 -0.9304 27 1 3.9256 -1.6512 -1.0693 28 1 4.0277 -0.1664 -0.0906 29 1 5.3074 -2.0943 0.9059 30 1 4.0259 -1.4786 1.9779 31 1 3.7640 -3.8861 0.1163 32 1 4.0793 -3.6594 3.1425 33 1 3.6642 -5.1596 2.2793 34 1 6.0113 -4.0905 1.1281 35 1 7.9131 -5.9424 1.5938 36 1 8.3289 -4.4425 2.4572 37 1 8.3073 -5.6739 4.6089 38 1 7.8913 -7.1744 3.7462 39 1 10.6158 -8.1773 6.0115 40 1 1.8885 -2.7132 2.2203 41 1 1.6154 -4.2281 1.3257 42 1 0.4108 -2.2550 0.3221 43 1 1.5666 -3.0110 -0.8028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347435620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:48 Heat of formation + Delta-G solvation = -119.816408 kcal Electronic energy + Delta-G solvation = -21791.241465 eV Core-core repulsion = 18448.378626 eV Total energy + Delta-G solvation = -3342.862839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28281 -40.60592 -38.74078 -36.19620 -35.53495 -33.83565 -32.90416 -32.50111 -30.33692 -28.70226 -27.21608 -24.52638 -24.23839 -23.15716 -21.70632 -21.12168 -19.89803 -18.81338 -18.17302 -17.37188 -17.04421 -16.87392 -16.63592 -16.44018 -16.37545 -15.58378 -14.93976 -14.89023 -14.75442 -14.38097 -14.24534 -14.10016 -14.05874 -13.72058 -13.22446 -13.17591 -12.97009 -12.80600 -12.77998 -12.47661 -12.16407 -11.95900 -11.91006 -11.67753 -11.62601 -11.45826 -11.30250 -10.83422 -10.67157 -10.57018 -10.03285 -9.67611 -8.18006 -6.32063 1.42166 1.44939 1.55831 1.60014 1.74088 2.06687 2.29477 2.45887 3.14898 3.58904 3.65947 3.76866 3.84982 4.07983 4.13706 4.23831 4.32706 4.42740 4.51139 4.54607 4.55322 4.59363 4.64987 4.74800 4.79515 4.85145 4.88005 4.96621 5.03949 5.11087 5.15958 5.19759 5.39069 5.48491 5.54950 5.57166 5.63827 5.85926 6.17906 6.42942 6.63916 6.86787 7.15865 7.37123 7.39169 8.94684 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042908 B = 0.002472 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.401044 B =11324.268786 C =11711.716958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.612 5.612 5 C 0.110 3.890 6 C -0.126 4.126 7 C -0.085 4.085 8 C 0.124 3.876 9 N -0.717 5.717 10 C 0.509 3.491 11 O -0.592 6.592 12 C -0.120 4.120 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.255 1.255 22 C -0.128 4.128 23 C 0.102 3.898 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.106 0.894 36 H 0.103 0.897 37 H -0.020 1.020 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 11.860 -17.185 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.345 5.345 5 C -0.013 4.013 6 C -0.164 4.164 7 C -0.104 4.104 8 C 0.000 4.000 9 N -0.371 5.371 10 C 0.298 3.702 11 O -0.472 6.472 12 C -0.160 4.160 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.166 4.166 23 C -0.019 4.019 24 H 0.131 0.869 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.124 0.876 36 H 0.121 0.879 37 H -0.002 1.002 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.268 11.993 -16.340 29.380 hybrid contribution 1.227 -0.135 0.410 1.300 sum -20.042 11.859 -15.930 28.214 Atomic orbital electron populations 1.22070 0.88526 1.06656 1.05932 1.21633 0.92388 0.82579 0.74226 1.90692 1.72069 1.33191 1.52980 1.48375 1.07518 1.07048 1.71573 1.21576 0.79789 1.01045 0.98905 1.21994 1.00869 0.95269 0.98272 1.21388 0.95922 0.94624 0.98491 1.21404 0.80622 0.99479 0.98475 1.45914 1.10711 1.55348 1.25106 1.21318 0.89906 0.76635 0.82369 1.90655 1.74689 1.52295 1.29566 1.21635 0.89879 1.02816 1.01652 1.18694 0.94616 0.93549 0.92792 1.21728 0.95366 1.33806 1.07134 0.90552 1.26160 1.04292 0.95425 0.94742 1.70183 1.38374 1.37108 1.12161 0.85309 0.78280 0.77398 0.79178 1.19800 1.21185 1.17821 1.21924 0.93688 1.02059 0.98950 1.22155 0.97745 0.82597 0.99386 0.86931 0.88612 0.87709 0.89347 0.91391 0.89832 0.93248 0.88050 0.93715 0.92114 0.74712 0.87609 0.87918 1.00169 0.99913 0.92875 0.92103 0.88226 0.86400 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.11 71.23 0.72 -0.60 16 2 C 0.50 8.76 7.79 87.66 0.68 9.44 16 3 O -0.61 -17.19 16.52 -3.02 -0.05 -17.24 16 4 N -0.61 -8.12 2.97 -818.89 -2.43 -10.56 16 5 C 0.11 1.61 6.43 86.36 0.56 2.16 16 6 C -0.13 -1.84 5.27 30.78 0.16 -1.68 16 7 C -0.09 -1.06 2.19 -10.66 -0.02 -1.08 16 8 C 0.12 2.65 5.06 86.38 0.44 3.08 16 9 N -0.72 -17.85 5.27 -463.05 -2.44 -20.29 16 10 C 0.51 19.32 7.83 87.66 0.69 20.01 16 11 O -0.59 -29.04 15.98 -3.03 -0.05 -29.09 16 12 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 13 C 0.04 2.30 4.26 29.85 0.13 2.43 16 14 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 16 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 17 N -0.94 -59.90 13.29 21.45 0.28 -59.61 16 18 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.13 -1.13 5.36 30.67 0.16 -0.96 16 23 C 0.10 0.60 6.31 86.36 0.54 1.14 16 24 H 0.11 0.14 5.14 -2.39 -0.01 0.13 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.07 1.37 7.00 -2.39 -0.02 1.35 16 29 H 0.08 1.14 7.16 -2.39 -0.02 1.13 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.42 7.25 7.65 -92.71 -0.71 6.54 16 35 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 37 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 38 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.12 0.13 5.14 -2.39 -0.01 0.12 16 43 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -86.87 347.76 2.55 -84.33 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.29 Total: 7.45 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.92 Total: -1.44 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -4.59 Total: -90.46 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.10 Total: -46.33 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -86.87 2.55 -84.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347435620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.489 kcal (2) G-P(sol) polarization free energy of solvation -86.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds