Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46701 * 2 1 4 4 C 1.50699 * 109.47510 * 120.00072 * 2 1 3 5 5 H 1.07995 * 120.00037 * 119.99927 * 4 2 1 6 6 C 1.37886 * 119.99586 * 300.00214 * 4 2 1 7 7 N 1.31514 * 120.00140 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99677 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47211 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47130 * 119.99629 * 8 6 4 11 11 H 1.48500 * 109.47219 * 240.00049 * 8 6 4 12 12 N 1.46896 * 109.47109 * 240.00527 * 2 1 3 13 13 C 1.46900 * 111.00045 * 154.84632 * 12 2 1 14 14 H 1.08991 * 110.43802 * 35.40920 * 13 12 2 15 15 C 1.54629 * 110.59713 * 158.02808 * 13 12 2 16 16 C 1.54305 * 101.84540 * 143.31322 * 15 13 12 17 17 N 1.46770 * 105.56111 * 334.93404 * 16 15 13 18 18 C 1.46500 * 124.34789 * 196.88338 * 17 16 15 19 19 C 1.53175 * 109.61396 * 120.12811 * 18 17 16 20 20 C 1.53094 * 109.16176 * 176.89032 * 19 18 17 21 21 O 1.42903 * 109.41635 * 302.39095 * 20 19 18 22 22 C 1.42909 * 114.09756 * 61.15758 * 21 20 19 23 23 C 1.53089 * 109.41536 * 298.84268 * 22 21 20 24 24 C 1.34414 * 111.29973 * 16.62210 * 17 16 15 25 25 O 1.21285 * 124.94508 * 179.83594 * 24 17 16 26 26 H 1.09006 * 109.46887 * 185.80560 * 1 2 3 27 27 H 1.09008 * 109.47065 * 305.80003 * 1 2 3 28 28 H 1.08995 * 109.47535 * 65.79976 * 1 2 3 29 29 H 0.97004 * 119.99594 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00361 * 30.88255 * 12 2 1 31 31 H 1.08998 * 110.97296 * 261.64706 * 15 13 12 32 32 H 1.08999 * 110.97203 * 25.37574 * 15 13 12 33 33 H 1.08997 * 110.31364 * 215.84933 * 16 15 13 34 34 H 1.08997 * 110.09107 * 93.90568 * 16 15 13 35 35 H 1.09000 * 109.54250 * 359.90069 * 18 17 16 36 36 H 1.09003 * 109.52491 * 56.98845 * 19 18 17 37 37 H 1.09000 * 109.52319 * 296.79616 * 19 18 17 38 38 H 1.09002 * 109.48058 * 182.41152 * 20 19 18 39 39 H 1.08999 * 109.48159 * 62.37007 * 20 19 18 40 40 H 1.08993 * 109.47923 * 58.82323 * 22 21 20 41 41 H 1.08994 * 109.47719 * 178.86011 * 22 21 20 42 42 H 1.08998 * 109.52696 * 177.51498 * 23 22 21 43 43 H 1.09006 * 109.52310 * 297.64121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1456 -2.2876 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1662 -1.5867 4.8161 12 7 2.0196 -0.6924 -1.1995 13 6 3.3655 -0.2288 -1.5624 14 1 3.9469 -0.0096 -0.6669 15 6 4.0881 -1.2836 -2.4320 16 6 4.8752 -0.3956 -3.4183 17 7 4.1366 0.8710 -3.4833 18 6 4.3038 1.8721 -4.5398 19 6 2.9697 2.0861 -5.2612 20 6 3.1368 3.1887 -6.3101 21 8 3.5884 4.3857 -5.6733 22 6 4.8542 4.2583 -5.0223 23 6 4.7561 3.1988 -3.9217 24 6 3.2829 0.9920 -2.4521 25 8 2.5529 1.9417 -2.2623 26 1 -0.3633 -1.0225 0.1040 27 1 -0.3633 0.6012 0.8336 28 1 -0.3634 0.4212 -0.9373 29 1 0.7089 1.1614 3.4845 30 1 1.3780 -0.5788 -1.9699 31 1 4.7613 -1.8921 -1.8282 32 1 3.3706 -1.9092 -2.9630 33 1 4.9105 -0.8626 -4.4026 34 1 5.8848 -0.2248 -3.0446 35 1 5.0530 1.5280 -5.2529 36 1 2.2086 2.3825 -4.5394 37 1 2.6678 1.1603 -5.7509 38 1 2.1796 3.3751 -6.7973 39 1 3.8686 2.8746 -7.0543 40 1 5.6084 3.9582 -5.7496 41 1 5.1341 5.2152 -4.5818 42 1 5.7316 3.0686 -3.4533 43 1 4.0319 3.5180 -3.1721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349636589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -77.528227 kcal Electronic energy + Delta-G solvation = -23474.146859 eV Core-core repulsion = 20133.117774 eV Total energy + Delta-G solvation = -3341.029086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61453 -38.92357 -36.02595 -35.72657 -33.84165 -32.04598 -31.24970 -29.87128 -28.10928 -25.67450 -25.08062 -24.43475 -23.69515 -21.26001 -20.90514 -20.20256 -18.79815 -16.88455 -16.47726 -16.18061 -16.02304 -15.61767 -15.08355 -14.69050 -14.64529 -14.32335 -14.00567 -13.52681 -13.31407 -13.13763 -12.91065 -12.58966 -12.48305 -12.06049 -11.94749 -11.72662 -11.38868 -11.23895 -11.04121 -10.89100 -10.68830 -10.57009 -10.51447 -10.29318 -9.94055 -9.84752 -9.78839 -9.51725 -8.98571 -8.53180 -8.35280 -7.23854 -5.91585 -3.95726 2.96898 3.07357 3.33906 3.41548 3.45720 3.75012 4.46849 4.48188 4.62906 4.74186 4.84461 4.89616 4.95728 5.03691 5.06430 5.22104 5.24456 5.32261 5.39790 5.45245 5.51111 5.57549 5.62564 5.73645 5.85945 5.93018 6.13962 6.18521 6.23027 6.38843 6.79634 6.88279 7.04191 7.04292 7.12634 7.34683 7.54934 7.78127 7.93842 8.25523 8.37974 8.57216 8.71415 9.11432 9.68638 11.15208 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.004298 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.450419 B = 6512.692914 C = 6790.461102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.208 3.792 3 H 0.017 0.983 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.655 5.655 13 C 0.067 3.933 14 H 0.117 0.883 15 C -0.121 4.121 16 C 0.104 3.896 17 N -0.625 5.625 18 C 0.162 3.838 19 C -0.173 4.173 20 C 0.068 3.932 21 O -0.381 6.381 22 C 0.068 3.932 23 C -0.173 4.173 24 C 0.487 3.513 25 O -0.516 6.516 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.258 0.742 30 H 0.319 0.681 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 0.543 -17.632 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.101 3.899 3 H 0.035 0.965 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.285 5.285 13 C -0.048 4.048 14 H 0.134 0.866 15 C -0.160 4.160 16 C -0.019 4.019 17 N -0.361 5.361 18 C 0.059 3.941 19 C -0.211 4.211 20 C -0.010 4.010 21 O -0.300 6.300 22 C -0.010 4.010 23 C -0.212 4.212 24 C 0.274 3.726 25 O -0.389 6.389 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.454 0.829 -17.043 19.507 hybrid contribution 0.336 0.118 0.530 0.639 sum 9.790 0.947 -16.512 19.219 Atomic orbital electron populations 1.21883 0.98169 1.00200 0.99270 1.19271 0.91740 0.92954 0.85968 0.96512 1.21209 1.30719 1.12013 0.89638 0.92007 1.24971 0.95453 0.95121 0.99004 1.69934 1.37179 1.23065 1.23123 0.86500 0.78542 0.79574 0.83098 1.19785 1.21278 1.21159 1.61011 1.00425 1.59206 1.07809 1.22342 0.95553 0.89791 0.97067 0.86565 1.22618 0.99280 0.97284 0.96771 1.22068 0.95655 0.83864 1.00321 1.48537 1.41735 1.19984 1.25807 1.20836 0.96867 0.87933 0.88476 1.22630 0.99158 0.99583 0.99741 1.22527 0.99970 0.84930 0.93546 1.87956 1.36919 1.33721 1.71370 1.22528 0.85353 0.99588 0.93497 1.22635 1.03208 0.95172 1.00181 1.22512 0.78797 0.89454 0.81868 1.90708 1.39810 1.34847 1.73584 0.94746 0.89669 0.97536 0.93169 0.86448 0.89225 0.89851 0.91087 0.91571 0.89999 0.89080 0.90834 0.88666 0.93349 0.93344 0.88647 0.90808 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.93 37.16 0.33 -3.17 16 2 C 0.21 5.41 2.37 -68.87 -0.16 5.25 16 3 H 0.02 0.51 7.10 -51.93 -0.37 0.14 16 4 C -0.50 -13.85 8.53 -34.44 -0.29 -14.15 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -26.39 11.39 55.43 0.63 -25.76 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.66 -14.01 6.10 -100.97 -0.62 -14.63 16 13 C 0.07 1.23 3.02 -67.72 -0.20 1.03 16 14 H 0.12 2.38 7.72 -51.93 -0.40 1.98 16 15 C -0.12 -1.57 6.88 -25.19 -0.17 -1.74 16 16 C 0.10 1.12 7.30 -3.21 -0.02 1.10 16 17 N -0.62 -8.61 2.84 -164.74 -0.47 -9.08 16 18 C 0.16 1.94 2.83 -67.74 -0.19 1.75 16 19 C -0.17 -2.12 5.46 -26.59 -0.15 -2.26 16 20 C 0.07 0.71 6.84 37.21 0.25 0.96 16 21 O -0.38 -4.88 10.77 -35.23 -0.38 -5.26 16 22 C 0.07 0.72 6.84 37.20 0.25 0.97 16 23 C -0.17 -2.17 5.46 -26.59 -0.15 -2.32 16 24 C 0.49 8.93 6.73 -10.86 -0.07 8.86 16 25 O -0.52 -11.57 14.20 5.55 0.08 -11.49 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 2.39 6.25 -51.92 -0.32 2.06 16 28 H 0.01 0.14 8.00 -51.93 -0.42 -0.28 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.32 6.55 8.02 -39.29 -0.32 6.23 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.09 1.48 6.70 -51.93 -0.35 1.13 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.52 6.70 -51.93 -0.35 1.17 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -32.55 336.84 -8.50 -41.05 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.13 Total: 5.73 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.67 Total: -2.28 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.45 Total: -49.47 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.30 Total: -16.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.55 -8.50 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.479 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds