Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47180 * 89.99600 * 8 6 4 10 10 H 1.48499 * 109.47108 * 209.99836 * 8 6 4 11 11 H 1.48500 * 109.47012 * 329.99731 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 H 1.09000 * 110.43444 * 32.45290 * 13 12 2 15 15 C 1.54627 * 110.48431 * 155.00170 * 13 12 2 16 16 C 1.54480 * 101.76366 * 143.47588 * 15 13 12 17 17 N 1.46763 * 105.47386 * 334.58096 * 16 15 13 18 18 C 1.46504 * 124.34787 * 197.01983 * 17 16 15 19 19 C 1.53181 * 109.54120 * 239.81904 * 18 17 16 20 20 C 1.53101 * 109.15734 * 183.24234 * 19 18 17 21 21 O 1.42899 * 109.48815 * 57.47376 * 20 19 18 22 22 C 1.42902 * 114.10102 * 298.89418 * 21 20 19 23 23 C 1.53096 * 109.41650 * 61.15073 * 22 21 20 24 24 C 1.34417 * 111.30261 * 17.01904 * 17 16 15 25 25 O 1.21274 * 124.94467 * 179.61501 * 24 17 16 26 26 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 28 28 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 29 29 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 31 31 H 1.09003 * 110.96899 * 261.58954 * 15 13 12 32 32 H 1.08995 * 110.97003 * 25.31602 * 15 13 12 33 33 H 1.09001 * 110.24956 * 93.58528 * 16 15 13 34 34 H 1.09004 * 110.24495 * 215.57901 * 16 15 13 35 35 H 1.09000 * 109.54487 * 359.97438 * 18 17 16 36 36 H 1.08998 * 109.52194 * 303.06176 * 19 18 17 37 37 H 1.08999 * 109.52056 * 63.24703 * 19 18 17 38 38 H 1.09000 * 109.40320 * 297.49572 * 20 19 18 39 39 H 1.09001 * 109.48290 * 177.50416 * 20 19 18 40 40 H 1.09008 * 109.47712 * 301.17273 * 22 21 20 41 41 H 1.08996 * 109.48314 * 181.13740 * 22 21 20 42 42 H 1.09001 * 109.51888 * 182.48877 * 23 22 21 43 43 H 1.09000 * 109.51598 * 62.29930 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1619 -4.4118 10 1 2.4866 -0.1416 -5.1123 11 1 3.6293 -1.7585 -3.7121 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2903 0.9687 2.2825 15 6 1.9778 -0.5648 3.6735 16 6 2.9385 0.2282 4.5871 17 7 3.8956 0.8747 3.6817 18 6 5.1842 1.4313 4.1013 19 6 5.2269 2.9273 3.7749 20 6 6.6055 3.4825 4.1423 21 8 7.6148 2.7590 3.4352 22 6 7.6526 1.3630 3.7383 23 6 6.3168 0.7221 3.3527 24 6 3.4380 0.8906 2.4178 25 8 4.0264 1.3701 1.4720 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7090 1.1613 -3.4844 30 1 2.9173 -1.1205 1.0288 31 1 0.9599 -0.5400 4.0627 32 1 2.3193 -1.5919 3.5454 33 1 2.3872 0.9797 5.1524 34 1 3.4586 -0.4483 5.2653 35 1 5.3108 1.2888 5.1745 36 1 5.0491 3.0728 2.7094 37 1 4.4589 3.4471 4.3476 38 1 6.7652 3.3747 5.2151 39 1 6.6568 4.5370 3.8712 40 1 7.8260 1.2274 4.8059 41 1 8.4581 0.8907 3.1762 42 1 6.3276 -0.3336 3.6237 43 1 6.1617 0.8219 2.2784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349636590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = -77.603684 kcal Electronic energy + Delta-G solvation = -23469.245617 eV Core-core repulsion = 20128.213260 eV Total energy + Delta-G solvation = -3341.032358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61503 -38.91135 -36.02280 -35.73829 -33.84205 -32.06567 -31.23049 -29.77057 -28.07807 -25.89434 -25.07811 -24.41554 -23.67888 -21.35535 -20.94089 -19.88725 -18.76905 -17.03009 -16.65956 -16.26187 -15.96698 -15.52735 -15.05539 -14.74396 -14.63680 -14.26471 -13.98693 -13.55495 -13.31600 -13.12105 -12.97210 -12.52172 -12.38073 -12.15393 -11.82124 -11.64722 -11.40587 -11.30569 -11.02598 -10.88218 -10.80028 -10.58397 -10.50113 -10.34666 -10.11982 -9.87536 -9.81837 -9.37020 -8.78777 -8.53060 -8.39553 -7.30780 -5.94395 -3.99368 2.97258 3.07269 3.36027 3.41818 3.45867 3.77176 4.46207 4.48157 4.64191 4.70784 4.85912 4.88486 4.95063 5.02155 5.06907 5.22032 5.25014 5.30158 5.37968 5.46505 5.53069 5.54894 5.62234 5.71770 5.80974 5.88393 6.11630 6.16500 6.23007 6.27897 6.79790 6.88308 7.06583 7.17287 7.21089 7.34559 7.50429 7.83033 7.94530 8.25400 8.35525 8.56289 8.65364 9.07208 9.64994 11.12609 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.004788 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.802510 B = 5846.114110 C = 6676.035731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.014 0.986 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.658 5.658 13 C 0.059 3.941 14 H 0.105 0.895 15 C -0.121 4.121 16 C 0.105 3.895 17 N -0.625 5.625 18 C 0.163 3.837 19 C -0.174 4.174 20 C 0.068 3.932 21 O -0.381 6.381 22 C 0.068 3.932 23 C -0.173 4.173 24 C 0.487 3.513 25 O -0.506 6.506 26 H 0.031 0.969 27 H 0.002 0.998 28 H 0.082 0.918 29 H 0.260 0.740 30 H 0.335 0.665 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 1.154 19.027 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.032 0.968 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.289 5.289 13 C -0.056 4.056 14 H 0.123 0.877 15 C -0.159 4.159 16 C -0.019 4.019 17 N -0.362 5.362 18 C 0.060 3.940 19 C -0.212 4.212 20 C -0.010 4.010 21 O -0.299 6.299 22 C -0.010 4.010 23 C -0.212 4.212 24 C 0.273 3.727 25 O -0.379 6.379 26 H 0.051 0.949 27 H 0.021 0.979 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.089 1.393 18.385 19.754 hybrid contribution 0.782 -0.040 -0.765 1.095 sum 7.871 1.353 17.620 19.346 Atomic orbital electron populations 1.21751 0.97905 0.99309 0.99357 1.19201 0.92201 0.93303 0.85141 0.96806 1.21167 1.31221 1.12284 0.90437 0.92445 1.24879 0.95116 0.94969 0.98957 1.69889 1.36874 1.22828 1.23334 0.86523 0.79167 0.79262 0.82580 1.20699 1.21292 1.19997 1.61076 1.31616 1.30125 1.06062 1.22408 0.93796 0.95404 0.94016 0.87718 1.22655 0.99635 0.99818 0.93823 1.22085 0.90800 0.96051 0.92956 1.48528 1.18249 1.59983 1.09432 1.20834 0.82506 0.92634 0.98062 1.22638 0.98004 0.95498 1.05069 1.22520 0.86649 0.96468 0.95318 1.87958 1.54519 1.19870 1.67571 1.22531 0.97135 0.81718 0.99578 1.22636 0.94617 0.99967 1.03967 1.22346 0.89440 0.78939 0.81965 1.90751 1.63134 1.45078 1.38951 0.94945 0.97866 0.89960 0.93017 0.84748 0.89466 0.89584 0.91655 0.91053 0.90021 0.89019 0.90862 0.93388 0.88669 0.93376 0.88628 0.90784 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.18 37.16 0.34 -2.79 16 2 C 0.21 5.46 2.41 -68.86 -0.17 5.29 16 3 H 0.01 0.42 7.40 -51.93 -0.38 0.04 16 4 C -0.51 -14.65 8.59 -34.44 -0.30 -14.94 16 5 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -26.41 11.32 55.43 0.63 -25.78 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 N -0.66 -14.15 6.11 -100.96 -0.62 -14.76 16 13 C 0.06 1.03 3.01 -67.72 -0.20 0.83 16 14 H 0.11 1.94 7.20 -51.93 -0.37 1.57 16 15 C -0.12 -1.50 6.88 -25.10 -0.17 -1.67 16 16 C 0.10 1.09 7.30 -3.12 -0.02 1.06 16 17 N -0.63 -8.60 2.84 -164.63 -0.47 -9.06 16 18 C 0.16 1.96 2.83 -67.75 -0.19 1.77 16 19 C -0.17 -2.18 5.47 -26.59 -0.15 -2.32 16 20 C 0.07 0.73 6.84 37.21 0.25 0.98 16 21 O -0.38 -5.00 10.77 -35.23 -0.38 -5.38 16 22 C 0.07 0.73 6.84 37.21 0.25 0.99 16 23 C -0.17 -2.21 5.46 -26.59 -0.15 -2.35 16 24 C 0.49 8.95 6.71 -10.86 -0.07 8.88 16 25 O -0.51 -11.67 14.54 5.56 0.08 -11.59 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.00 0.05 7.50 -51.93 -0.39 -0.34 16 28 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.33 7.41 7.93 -39.29 -0.31 7.10 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.09 1.53 6.68 -51.93 -0.35 1.18 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.56 6.71 -51.93 -0.35 1.22 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -32.97 336.28 -8.44 -41.41 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.07 Total: 5.51 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.66 Total: -2.57 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.46 Total: -49.61 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.30 Total: -16.97 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.97 -8.44 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.192 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds