Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47343 * 2 1 4 4 C 1.50697 * 109.47234 * 240.00631 * 2 1 3 5 5 H 1.07998 * 119.99856 * 243.95732 * 4 2 1 6 6 C 1.37871 * 120.00567 * 63.95006 * 4 2 1 7 7 N 1.31517 * 119.99619 * 9.35556 * 6 4 2 8 8 Si 1.86798 * 120.00474 * 189.35282 * 6 4 2 9 9 H 1.48493 * 109.47195 * 90.00172 * 8 6 4 10 10 H 1.48505 * 109.47011 * 330.00116 * 8 6 4 11 11 H 1.48506 * 109.47091 * 210.00215 * 8 6 4 12 12 N 1.46900 * 109.47297 * 120.00181 * 2 1 3 13 13 C 1.46903 * 110.99842 * 277.14701 * 12 2 1 14 14 H 1.08993 * 110.43669 * 356.33075 * 13 12 2 15 15 C 1.54625 * 110.48623 * 233.64247 * 13 12 2 16 16 C 1.54476 * 101.76565 * 216.52625 * 15 13 12 17 17 N 1.46760 * 105.47401 * 25.41826 * 16 15 13 18 18 C 1.46500 * 124.34950 * 163.00361 * 17 16 15 19 19 C 1.53172 * 109.54539 * 239.55524 * 18 17 16 20 20 C 1.53088 * 109.16561 * 183.15321 * 19 18 17 21 21 O 1.42908 * 109.41690 * 57.61287 * 20 19 18 22 22 C 1.42908 * 114.09207 * 298.84295 * 21 20 19 23 23 C 1.53091 * 109.41749 * 61.15496 * 22 21 20 24 24 C 1.34417 * 111.29862 * 342.98214 * 17 16 15 25 25 O 1.21282 * 124.94032 * 180.37554 * 24 17 16 26 26 H 1.08992 * 109.47226 * 180.20557 * 1 2 3 27 27 H 1.09005 * 109.47158 * 300.20467 * 1 2 3 28 28 H 1.09002 * 109.47136 * 60.20282 * 1 2 3 29 29 H 0.96999 * 120.00287 * 355.76082 * 7 6 4 30 30 H 1.00896 * 111.00052 * 153.19930 * 12 2 1 31 31 H 1.09003 * 110.97252 * 334.65041 * 15 13 12 32 32 H 1.09004 * 110.96825 * 98.40745 * 15 13 12 33 33 H 1.09000 * 110.24594 * 266.41516 * 16 15 13 34 34 H 1.09009 * 110.31887 * 144.45861 * 16 15 13 35 35 H 1.08998 * 109.54372 * 359.82803 * 18 17 16 36 36 H 1.09006 * 109.52553 * 303.06099 * 19 18 17 37 37 H 1.09000 * 109.52166 * 63.24775 * 19 18 17 38 38 H 1.09000 * 109.48352 * 297.62678 * 20 19 18 39 39 H 1.09006 * 109.48413 * 177.59155 * 20 19 18 40 40 H 1.09005 * 109.47936 * 301.17095 * 22 21 20 41 41 H 1.08998 * 109.48781 * 181.14676 * 22 21 20 42 42 H 1.09003 * 109.52248 * 182.48182 * 23 22 21 43 43 H 1.09004 * 109.52268 * 62.29543 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5995 -1.6241 -1.1328 6 6 1.7678 -0.1936 -2.4811 7 7 1.2414 1.0058 -2.5991 8 14 2.1572 -1.1970 -4.0078 9 1 0.9775 -2.0220 -4.3721 10 1 3.3164 -2.0841 -3.7347 11 1 2.4873 -0.2825 -5.1303 12 7 2.0197 -0.6925 1.1994 13 6 2.0343 0.2093 2.3589 14 1 1.7392 1.2157 2.0620 15 6 3.4342 0.2243 3.0153 16 6 3.0781 0.3368 4.5142 17 7 1.7317 -0.2334 4.6407 18 6 1.1311 -0.6620 5.9063 19 6 0.7811 -2.1512 5.8290 20 6 0.0831 -2.5713 7.1251 21 8 -1.0818 -1.7667 7.3198 22 6 -0.8109 -0.3692 7.4466 23 6 -0.1488 0.1394 6.1634 24 6 1.1204 -0.3114 3.4462 25 8 -0.0007 -0.7377 3.2661 26 1 -0.3633 -1.0276 0.0037 27 1 -0.3634 0.5170 0.8882 28 1 -0.3633 0.5107 -0.8918 29 1 0.9823 1.5019 -1.8068 30 1 2.9329 -1.0906 1.0395 31 1 3.9711 -0.7020 2.8103 32 1 4.0106 1.0886 2.6853 33 1 3.0759 1.3818 4.8240 34 1 3.7870 -0.2327 5.1155 35 1 1.8363 -0.4935 6.7201 36 1 0.1153 -2.3256 4.9837 37 1 1.6935 -2.7337 5.7014 38 1 0.7638 -2.4347 7.9654 39 1 -0.2067 -3.6201 7.0586 40 1 -0.1419 -0.2038 8.2911 41 1 -1.7445 0.1686 7.6117 42 1 0.0986 1.1951 6.2749 43 1 -0.8333 0.0113 5.3248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349636591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -79.765723 kcal Electronic energy + Delta-G solvation = -23336.643259 eV Core-core repulsion = 19995.517148 eV Total energy + Delta-G solvation = -3341.126111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62493 -38.94341 -36.22399 -35.87465 -34.04946 -32.20608 -31.27807 -29.74809 -27.98551 -26.15948 -24.86572 -24.28253 -23.72328 -21.68617 -20.94922 -20.21507 -18.74862 -17.29276 -16.82013 -16.37024 -16.05727 -15.70618 -15.13520 -14.68615 -14.36648 -14.13815 -13.96826 -13.72739 -13.51050 -13.39321 -13.01660 -12.66289 -12.46671 -12.25158 -12.00309 -11.79490 -11.42873 -11.30440 -11.08627 -10.96179 -10.86089 -10.60403 -10.57822 -10.49285 -10.14001 -10.08685 -9.85850 -9.29297 -8.59219 -8.54394 -8.25491 -7.45772 -6.36777 -4.08183 2.93043 3.07354 3.44585 3.47764 3.63029 3.72016 4.39491 4.51212 4.57349 4.59874 4.80074 4.80946 4.85131 4.90710 5.01620 5.13719 5.21451 5.21981 5.36550 5.39538 5.43162 5.48131 5.53162 5.62338 5.73124 5.82574 5.91596 6.04026 6.10551 6.17521 6.64175 6.75185 6.95699 6.99946 7.01333 7.13747 7.31707 7.64875 7.81480 8.09061 8.45074 8.55289 8.62269 8.85778 9.63688 11.00736 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.003834 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.334641 B = 7300.823974 C = 7542.500692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.203 3.797 3 H -0.007 1.007 4 C -0.602 4.602 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.286 1.286 12 N -0.659 5.659 13 C 0.056 3.944 14 H 0.090 0.910 15 C -0.148 4.148 16 C 0.110 3.890 17 N -0.628 5.628 18 C 0.165 3.835 19 C -0.173 4.173 20 C 0.067 3.933 21 O -0.381 6.381 22 C 0.068 3.932 23 C -0.174 4.174 24 C 0.529 3.471 25 O -0.504 6.504 26 H 0.044 0.956 27 H 0.018 0.982 28 H 0.051 0.949 29 H 0.271 0.729 30 H 0.340 0.660 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -1.011 20.887 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.010 0.990 4 C -0.640 4.640 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.212 1.212 12 N -0.292 5.292 13 C -0.058 4.058 14 H 0.107 0.893 15 C -0.186 4.186 16 C -0.014 4.014 17 N -0.365 5.365 18 C 0.062 3.938 19 C -0.211 4.211 20 C -0.010 4.010 21 O -0.300 6.300 22 C -0.010 4.010 23 C -0.212 4.212 24 C 0.315 3.685 25 O -0.376 6.376 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.661 -1.559 19.309 19.554 hybrid contribution 1.164 0.700 1.503 2.026 sum 3.825 -0.859 20.812 21.178 Atomic orbital electron populations 1.21752 0.97933 1.00440 0.98273 1.19346 0.92381 0.91947 0.86761 0.98958 1.22023 1.38433 1.11853 0.91707 0.92703 1.25756 0.94757 0.96420 1.01238 1.70772 1.40045 1.09970 1.33822 0.83491 0.76266 0.75008 0.75126 1.21367 1.21553 1.21155 1.60341 1.31154 1.33721 1.03949 1.22269 0.93115 0.97709 0.92737 0.89275 1.23116 0.97614 1.03966 0.93936 1.21967 0.83604 0.98347 0.97442 1.48405 1.16801 1.64380 1.06921 1.20823 0.94153 0.93701 0.85158 1.22630 1.02222 0.95752 1.00511 1.22539 0.87446 0.95615 0.95390 1.87957 1.31490 1.17412 1.93097 1.22523 1.00777 0.82148 0.95525 1.22647 0.98264 0.99900 1.00401 1.21096 0.86946 0.76957 0.83468 1.90648 1.18796 1.44535 1.83640 0.93682 0.96306 0.93051 0.91730 0.83994 0.89548 0.89420 0.91600 0.90926 0.89976 0.88885 0.90781 0.93366 0.88613 0.93343 0.88669 0.90886 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.06 37.16 0.34 -2.92 16 2 C 0.20 5.18 2.09 -68.87 -0.14 5.04 16 3 H -0.01 -0.19 6.99 -51.93 -0.36 -0.55 16 4 C -0.60 -16.79 8.51 -34.44 -0.29 -17.08 16 5 H 0.05 1.52 7.71 -52.49 -0.40 1.12 16 6 C 0.02 0.66 5.20 -17.82 -0.09 0.56 16 7 N -0.91 -27.22 13.06 55.43 0.72 -26.50 16 8 Si 1.07 25.25 29.91 -169.99 -5.09 20.16 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.66 -14.21 6.27 -100.97 -0.63 -14.84 16 13 C 0.06 0.99 3.17 -67.72 -0.21 0.78 16 14 H 0.09 1.67 7.30 -51.93 -0.38 1.29 16 15 C -0.15 -1.83 6.68 -25.10 -0.17 -2.00 16 16 C 0.11 1.14 7.30 -3.13 -0.02 1.11 16 17 N -0.63 -8.43 2.84 -164.64 -0.47 -8.90 16 18 C 0.16 1.90 2.84 -67.75 -0.19 1.71 16 19 C -0.17 -2.10 5.46 -26.60 -0.15 -2.25 16 20 C 0.07 0.69 6.84 37.20 0.25 0.94 16 21 O -0.38 -4.72 10.77 -35.23 -0.38 -5.10 16 22 C 0.07 0.68 6.84 37.20 0.25 0.93 16 23 C -0.17 -2.04 5.46 -26.59 -0.15 -2.19 16 24 C 0.53 9.50 7.04 -10.86 -0.08 9.42 16 25 O -0.50 -11.02 15.00 5.56 0.08 -10.94 16 26 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 28 H 0.05 1.39 6.22 -51.93 -0.32 1.07 16 29 H 0.27 8.10 5.89 -40.82 -0.24 7.86 16 30 H 0.34 6.96 7.40 -39.29 -0.29 6.67 16 31 H 0.09 1.05 7.60 -51.93 -0.39 0.65 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.09 1.51 6.69 -51.93 -0.35 1.16 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.43 6.70 -51.93 -0.35 1.08 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -33.36 335.63 -8.30 -41.66 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.95 Total: 5.34 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.65 Total: -5.94 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.38 Total: -50.24 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.30 Total: -16.04 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.36 -8.30 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.110 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds