Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47343 * 2 1 4 4 C 1.50697 * 109.47234 * 240.00631 * 2 1 3 5 5 H 1.07998 * 119.99856 * 243.95732 * 4 2 1 6 6 C 1.37871 * 120.00567 * 63.95006 * 4 2 1 7 7 N 1.31517 * 119.99619 * 9.35556 * 6 4 2 8 8 Si 1.86798 * 120.00474 * 189.35282 * 6 4 2 9 9 H 1.48493 * 109.47195 * 90.00172 * 8 6 4 10 10 H 1.48505 * 109.47011 * 330.00116 * 8 6 4 11 11 H 1.48506 * 109.47091 * 210.00215 * 8 6 4 12 12 N 1.46900 * 109.47297 * 120.00181 * 2 1 3 13 13 C 1.46903 * 110.99842 * 277.14701 * 12 2 1 14 14 H 1.08993 * 110.43669 * 356.33075 * 13 12 2 15 15 C 1.54625 * 110.48623 * 233.64247 * 13 12 2 16 16 C 1.54476 * 101.76565 * 216.52625 * 15 13 12 17 17 N 1.46760 * 105.47401 * 25.41826 * 16 15 13 18 18 C 1.46500 * 124.34950 * 163.00361 * 17 16 15 19 19 C 1.53172 * 109.54539 * 239.55524 * 18 17 16 20 20 C 1.53088 * 109.16561 * 183.15321 * 19 18 17 21 21 O 1.42908 * 109.41690 * 57.61287 * 20 19 18 22 22 C 1.42908 * 114.09207 * 298.84295 * 21 20 19 23 23 C 1.53091 * 109.41749 * 61.15496 * 22 21 20 24 24 C 1.34417 * 111.29862 * 342.98214 * 17 16 15 25 25 O 1.21282 * 124.94032 * 180.37554 * 24 17 16 26 26 H 1.08992 * 109.47226 * 180.20557 * 1 2 3 27 27 H 1.09005 * 109.47158 * 300.20467 * 1 2 3 28 28 H 1.09002 * 109.47136 * 60.20282 * 1 2 3 29 29 H 0.96999 * 120.00287 * 355.76082 * 7 6 4 30 30 H 1.00896 * 111.00052 * 153.19930 * 12 2 1 31 31 H 1.09003 * 110.97252 * 334.65041 * 15 13 12 32 32 H 1.09004 * 110.96825 * 98.40745 * 15 13 12 33 33 H 1.09000 * 110.24594 * 266.41516 * 16 15 13 34 34 H 1.09009 * 110.31887 * 144.45861 * 16 15 13 35 35 H 1.08998 * 109.54372 * 359.82803 * 18 17 16 36 36 H 1.09006 * 109.52553 * 303.06099 * 19 18 17 37 37 H 1.09000 * 109.52166 * 63.24775 * 19 18 17 38 38 H 1.09000 * 109.48352 * 297.62678 * 20 19 18 39 39 H 1.09006 * 109.48413 * 177.59155 * 20 19 18 40 40 H 1.09005 * 109.47936 * 301.17095 * 22 21 20 41 41 H 1.08998 * 109.48781 * 181.14676 * 22 21 20 42 42 H 1.09003 * 109.52248 * 182.48182 * 23 22 21 43 43 H 1.09004 * 109.52268 * 62.29543 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5995 -1.6241 -1.1328 6 6 1.7678 -0.1936 -2.4811 7 7 1.2414 1.0058 -2.5991 8 14 2.1572 -1.1970 -4.0078 9 1 0.9775 -2.0220 -4.3721 10 1 3.3164 -2.0841 -3.7347 11 1 2.4873 -0.2825 -5.1303 12 7 2.0197 -0.6925 1.1994 13 6 2.0343 0.2093 2.3589 14 1 1.7392 1.2157 2.0620 15 6 3.4342 0.2243 3.0153 16 6 3.0781 0.3368 4.5142 17 7 1.7317 -0.2334 4.6407 18 6 1.1311 -0.6620 5.9063 19 6 0.7811 -2.1512 5.8290 20 6 0.0831 -2.5713 7.1251 21 8 -1.0818 -1.7667 7.3198 22 6 -0.8109 -0.3692 7.4466 23 6 -0.1488 0.1394 6.1634 24 6 1.1204 -0.3114 3.4462 25 8 -0.0007 -0.7377 3.2661 26 1 -0.3633 -1.0276 0.0037 27 1 -0.3634 0.5170 0.8882 28 1 -0.3633 0.5107 -0.8918 29 1 0.9823 1.5019 -1.8068 30 1 2.9329 -1.0906 1.0395 31 1 3.9711 -0.7020 2.8103 32 1 4.0106 1.0886 2.6853 33 1 3.0759 1.3818 4.8240 34 1 3.7870 -0.2327 5.1155 35 1 1.8363 -0.4935 6.7201 36 1 0.1153 -2.3256 4.9837 37 1 1.6935 -2.7337 5.7014 38 1 0.7638 -2.4347 7.9654 39 1 -0.2067 -3.6201 7.0586 40 1 -0.1419 -0.2038 8.2911 41 1 -1.7445 0.1686 7.6117 42 1 0.0986 1.1951 6.2749 43 1 -0.8333 0.0113 5.3248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349636591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -104.481770 kcal Electronic energy + Delta-G solvation = -23337.715027 eV Core-core repulsion = 19995.517148 eV Total energy + Delta-G solvation = -3342.197879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78625 -39.92386 -37.91397 -37.27115 -35.44945 -33.85790 -32.11773 -31.21800 -29.51325 -27.74064 -26.68494 -25.43783 -24.58566 -22.93217 -22.31599 -21.76593 -19.97821 -19.18397 -17.96365 -17.52323 -17.04457 -16.84910 -16.23420 -16.01439 -15.68883 -15.59261 -15.46326 -15.20133 -14.84285 -14.59462 -14.40288 -14.08675 -13.74925 -13.39849 -13.30803 -13.01739 -12.99388 -12.72127 -12.67011 -12.53692 -12.31995 -12.20467 -11.97322 -11.91109 -11.84442 -11.40903 -10.89052 -10.69867 -10.59397 -10.36693 -9.65601 -9.17923 -8.64033 -6.36558 1.53810 1.60694 1.62344 1.79990 1.96869 2.55603 2.94754 3.16756 3.26444 3.50510 3.63005 3.73643 3.76796 3.96114 4.00068 4.09029 4.13762 4.25587 4.36922 4.42178 4.48755 4.50880 4.58684 4.67817 4.71213 4.79062 4.80918 4.87627 4.92381 4.96258 5.01025 5.07715 5.12598 5.19288 5.47538 5.71957 5.79160 6.02117 6.13958 6.24125 6.40507 6.54407 6.73862 7.30440 7.44581 8.73469 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.003834 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.334641 B = 7300.823974 C = 7542.500692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.210 3.790 3 H -0.026 1.026 4 C -0.613 4.613 5 H 0.054 0.946 6 C -0.025 4.025 7 N -0.932 5.932 8 Si 1.119 2.881 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.282 1.282 12 N -0.667 5.667 13 C 0.045 3.955 14 H 0.071 0.929 15 C -0.136 4.136 16 C 0.110 3.890 17 N -0.617 5.617 18 C 0.159 3.841 19 C -0.170 4.170 20 C 0.068 3.932 21 O -0.410 6.410 22 C 0.068 3.932 23 C -0.171 4.171 24 C 0.520 3.480 25 O -0.558 6.558 26 H 0.028 0.972 27 H 0.021 0.979 28 H 0.033 0.967 29 H 0.259 0.741 30 H 0.345 0.655 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -1.319 23.367 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 H -0.009 1.009 4 C -0.651 4.651 5 H 0.072 0.928 6 C -0.224 4.224 7 N -0.569 5.569 8 Si 0.941 3.059 9 H -0.207 1.207 10 H -0.192 1.192 11 H -0.208 1.208 12 N -0.300 5.300 13 C -0.069 4.069 14 H 0.089 0.911 15 C -0.175 4.175 16 C -0.012 4.012 17 N -0.352 5.352 18 C 0.057 3.943 19 C -0.208 4.208 20 C -0.009 4.009 21 O -0.329 6.329 22 C -0.009 4.009 23 C -0.210 4.210 24 C 0.307 3.693 25 O -0.435 6.435 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.264 -1.857 21.859 22.561 hybrid contribution 0.358 0.819 0.820 1.213 sum 5.622 -1.037 22.679 23.388 Atomic orbital electron populations 1.21556 0.98722 0.98926 0.97452 1.19092 0.91645 0.91042 0.88069 1.00860 1.22344 1.38159 1.11779 0.92790 0.92766 1.27202 0.94015 0.96542 1.04657 1.70892 1.41729 1.11089 1.33219 0.82899 0.77071 0.74069 0.71848 1.20651 1.19216 1.20799 1.60143 1.31600 1.34651 1.03600 1.22366 0.97002 0.95840 0.91689 0.91078 1.23098 0.94136 1.05206 0.95019 1.22280 0.82267 1.00452 0.96151 1.48458 1.17634 1.62864 1.06210 1.21136 0.94985 0.92991 0.85169 1.22573 1.01734 0.96735 0.99784 1.22656 0.87347 0.95521 0.95328 1.87925 1.33080 1.18714 1.93163 1.22660 1.01780 0.81023 0.95432 1.22601 0.97665 1.01058 0.99649 1.21147 0.86298 0.76791 0.85104 1.90623 1.20977 1.47129 1.84721 0.95325 0.95985 0.94828 0.93069 0.83444 0.88894 0.87594 0.89003 0.87025 0.85285 0.94073 0.89626 0.89756 0.88329 0.89774 0.88232 0.89413 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 9.06 71.98 0.65 -5.25 16 2 C 0.21 11.11 2.09 44.17 0.09 11.20 16 3 H -0.03 -1.45 6.99 -2.38 -0.02 -1.47 16 4 C -0.61 -34.76 8.51 25.60 0.22 -34.54 16 5 H 0.05 3.02 7.71 -2.91 -0.02 3.00 16 6 C -0.03 -1.44 5.20 84.65 0.44 -1.00 16 7 N -0.93 -57.06 13.06 21.45 0.28 -56.78 16 8 Si 1.12 50.67 29.91 68.60 2.05 52.72 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.67 -29.45 6.27 -473.37 -2.97 -32.42 16 13 C 0.05 1.61 3.17 44.91 0.14 1.75 16 14 H 0.07 2.77 7.30 -2.39 -0.02 2.75 16 15 C -0.14 -3.04 6.68 31.65 0.21 -2.83 16 16 C 0.11 1.80 7.30 86.83 0.63 2.44 16 17 N -0.62 -15.31 2.84 -793.40 -2.25 -17.57 16 18 C 0.16 3.25 2.84 45.11 0.13 3.38 16 19 C -0.17 -3.93 5.46 30.68 0.17 -3.77 16 20 C 0.07 1.25 6.84 72.01 0.49 1.74 16 21 O -0.41 -9.65 10.77 -148.98 -1.60 -11.25 16 22 C 0.07 1.21 6.84 72.01 0.49 1.71 16 23 C -0.17 -3.84 5.46 30.69 0.17 -3.67 16 24 C 0.52 19.00 7.04 87.90 0.62 19.62 16 25 O -0.56 -25.94 15.00 -3.04 -0.05 -25.99 16 26 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.02 1.13 7.97 -2.38 -0.02 1.11 16 28 H 0.03 1.90 6.22 -2.39 -0.01 1.89 16 29 H 0.26 16.08 5.89 -92.71 -0.55 15.54 16 30 H 0.35 14.19 7.40 -89.70 -0.66 13.53 16 31 H 0.09 1.99 7.60 -2.39 -0.02 1.97 16 32 H 0.11 2.01 8.14 -2.38 -0.02 2.00 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.13 1.53 8.07 -2.39 -0.02 1.51 16 36 H 0.04 1.40 6.69 -2.38 -0.02 1.38 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.37 6.70 -2.39 -0.02 1.36 16 Total: -1.00 -78.02 335.63 0.47 -77.54 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.56 Total: 22.98 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.46 Total: -9.23 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.94 Total: -106.77 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.65 Total: -37.24 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -78.02 0.47 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.937 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds