Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47464 * 2 1 4 4 C 1.53002 * 109.47014 * 240.00163 * 2 1 3 5 5 N 1.46496 * 109.47148 * 184.99771 * 4 2 1 6 6 C 1.36942 * 120.00135 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00101 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99767 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47017 * 90.00719 * 10 8 6 12 12 H 1.48505 * 109.46847 * 210.00680 * 10 8 6 13 13 H 1.48497 * 109.47048 * 330.00159 * 10 8 6 14 14 N 1.46502 * 109.47346 * 119.99962 * 2 1 3 15 15 C 1.34777 * 120.00010 * 274.99619 * 14 2 1 16 16 O 1.21280 * 120.00020 * 0.02562 * 15 14 2 17 17 C 1.50699 * 119.99888 * 179.97438 * 15 14 2 18 18 H 1.09007 * 110.90311 * 56.42220 * 17 15 14 19 19 C 1.55300 * 110.85298 * 292.83689 * 17 15 14 20 20 C 1.54940 * 100.94415 * 207.67553 * 19 17 15 21 21 O 1.43641 * 105.13614 * 36.44473 * 20 19 17 22 22 C 1.43245 * 109.97106 * 335.57089 * 21 20 19 23 23 H 1.09000 * 109.82609 * 121.22500 * 22 21 20 24 24 C 1.52997 * 109.83152 * 242.10448 * 22 21 20 25 25 C 1.53006 * 117.49816 * 7.29918 * 24 22 21 26 26 C 1.52992 * 117.50452 * 298.63609 * 24 22 21 27 27 H 1.09004 * 109.46419 * 299.99972 * 1 2 3 28 28 H 1.08998 * 109.47236 * 60.00061 * 1 2 3 29 29 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47045 * 304.99549 * 4 2 1 31 31 H 1.08998 * 109.46943 * 64.99605 * 4 2 1 32 32 H 0.96999 * 120.00484 * 0.02562 * 5 4 2 33 33 H 0.97000 * 119.99742 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99781 * 94.99760 * 14 2 1 35 35 H 1.09007 * 111.12449 * 325.59827 * 19 17 15 36 36 H 1.09003 * 111.12579 * 89.71310 * 19 17 15 37 37 H 1.08997 * 110.31031 * 277.52940 * 20 19 17 38 38 H 1.08999 * 110.30948 * 155.35829 * 20 19 17 39 39 H 1.09002 * 115.55002 * 152.95999 * 24 22 21 40 40 H 1.08999 * 117.49806 * 359.97438 * 25 24 22 41 41 H 1.08997 * 117.50136 * 145.01932 * 25 24 22 42 42 H 1.09002 * 117.50106 * 214.97772 * 26 24 22 43 43 H 1.09004 * 117.49599 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4388 -2.2069 7 1 3.6467 -1.8439 -3.0517 8 6 5.5672 -1.5379 -2.1516 9 7 6.2218 -1.0437 -1.1222 10 14 6.4999 -2.3727 -3.5382 11 1 6.8617 -1.3658 -4.5680 12 1 7.7357 -2.9953 -2.9990 13 1 5.6440 -3.4208 -4.1498 14 7 2.0184 -0.6906 1.1962 15 6 2.1472 -0.0182 2.3571 16 8 1.8584 1.1584 2.4117 17 6 2.6491 -0.7288 3.5877 18 1 3.6217 -1.1853 3.4037 19 6 1.6229 -1.7897 4.0706 20 6 1.9368 -1.8335 5.5872 21 8 2.2535 -0.4787 5.9440 22 6 2.7139 0.2360 4.7911 23 1 2.0714 1.0976 4.6094 24 6 4.1552 0.7004 5.0096 25 6 4.8760 0.2008 6.2634 26 6 4.4200 1.6593 6.1720 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.9824 -0.4628 -0.4317 33 1 7.1885 -1.1133 -1.0834 34 1 2.2491 -1.6318 1.1526 35 1 0.6004 -1.4577 3.8904 36 1 1.8076 -2.7566 3.6024 37 1 2.7899 -2.4844 5.7783 38 1 1.0652 -2.1775 6.1441 39 1 4.7497 0.8296 4.1052 40 1 4.3232 -0.4583 6.9327 41 1 5.9447 0.0019 6.1839 42 1 5.1890 2.4191 6.0325 43 1 3.5672 1.9596 6.7809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497866772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = -53.795506 kcal Electronic energy + Delta-G solvation = -22936.624233 eV Core-core repulsion = 19596.624275 eV Total energy + Delta-G solvation = -3339.999958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53949 -38.80227 -36.29334 -36.15800 -33.68956 -32.66988 -31.06822 -29.88878 -29.28403 -25.74609 -24.28467 -22.82760 -22.52757 -22.25858 -20.78977 -20.09031 -19.79899 -17.65695 -17.18778 -16.68113 -15.89327 -15.36581 -15.26779 -14.79838 -14.69219 -14.51222 -13.75530 -13.50339 -13.34253 -13.26656 -12.77058 -12.52746 -12.32279 -12.25564 -11.91597 -11.73876 -11.48107 -11.47279 -11.33207 -11.10809 -10.94872 -10.85521 -10.50379 -10.23229 -10.09306 -10.01624 -9.78946 -9.66512 -9.38314 -8.96275 -8.73717 -7.01066 -5.82927 -3.12844 2.84162 3.35560 3.39627 3.44647 3.46100 3.71416 3.87986 4.34944 4.52974 4.59773 4.68494 4.95270 4.98720 5.07016 5.14869 5.24728 5.30707 5.36414 5.45466 5.49661 5.52762 5.56108 5.62748 5.71839 5.73725 5.80667 5.98016 5.99426 6.05738 6.14132 6.14805 6.21727 6.27342 6.35772 6.44411 6.65971 6.90891 6.95602 7.63577 7.81552 8.35000 8.48252 9.46945 10.02549 10.37977 11.39422 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.004511 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.750885 B = 6205.528678 C = 7166.945047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.707 5.707 15 C 0.528 3.472 16 O -0.544 6.544 17 C -0.140 4.140 18 H 0.116 0.884 19 C -0.145 4.145 20 C 0.053 3.947 21 O -0.375 6.375 22 C 0.126 3.874 23 H 0.105 0.895 24 C -0.168 4.168 25 C -0.170 4.170 26 C -0.172 4.172 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.404 0.596 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -1.438 13.153 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.357 5.357 15 C 0.313 3.687 16 O -0.422 6.422 17 C -0.161 4.161 18 H 0.134 0.866 19 C -0.183 4.183 20 C -0.023 4.023 21 O -0.294 6.294 22 C 0.069 3.931 23 H 0.122 0.878 24 C -0.187 4.187 25 C -0.207 4.207 26 C -0.209 4.209 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.239 0.761 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.587 -0.594 13.219 16.340 hybrid contribution 1.048 -0.935 -0.946 1.693 sum -8.539 -1.529 12.273 15.029 Atomic orbital electron populations 1.22096 0.95502 1.01816 1.02153 1.21259 0.93340 0.98038 0.84588 0.89518 1.20982 0.86864 0.96942 0.93592 1.42356 0.99729 1.70320 1.25269 1.19221 0.89447 1.29580 0.99251 0.91130 1.24747 0.96424 1.01505 0.98068 1.69664 1.07268 1.50775 1.30233 0.86189 0.79485 0.79006 0.81472 1.21668 1.21764 1.20742 1.45958 1.66223 1.14372 1.09142 1.20017 0.77385 0.87001 0.84276 1.90671 1.50736 1.15828 1.84957 1.22854 1.01699 0.97234 0.94320 0.86629 1.23243 0.99427 0.99241 0.96352 1.23335 1.00271 0.84664 0.94060 1.88403 1.85686 1.22619 1.32723 1.22090 0.93907 0.94546 0.82598 0.87778 1.22727 0.96518 1.05302 0.94116 1.22888 0.99851 0.97404 1.00538 1.22876 1.03283 0.92992 1.01735 0.92477 0.91637 0.92603 0.95806 0.94873 0.78023 0.93464 0.76122 0.89950 0.89010 0.91891 0.89629 0.86873 0.88056 0.89250 0.89069 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 2 C 0.13 2.18 2.73 -67.93 -0.19 1.99 16 3 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.74 5.82 -4.04 -0.02 2.72 16 5 N -0.73 -17.82 5.43 -59.91 -0.33 -18.14 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 10 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 N -0.71 -10.91 4.52 -53.80 -0.24 -11.15 16 15 C 0.53 8.37 7.11 -10.99 -0.08 8.29 16 16 O -0.54 -10.32 15.08 5.56 0.08 -10.24 16 17 C -0.14 -1.81 2.91 -89.83 -0.26 -2.07 16 18 H 0.12 1.50 7.85 -51.93 -0.41 1.09 16 19 C -0.14 -1.45 6.60 -24.49 -0.16 -1.61 16 20 C 0.05 0.52 7.78 38.18 0.30 0.82 16 21 O -0.37 -4.77 9.40 -35.23 -0.33 -5.10 16 22 C 0.13 1.71 3.34 -26.01 -0.09 1.63 16 23 H 0.10 1.62 6.78 -51.93 -0.35 1.27 16 24 C -0.17 -2.26 5.56 -90.62 -0.50 -2.76 16 25 C -0.17 -2.01 9.88 -26.69 -0.26 -2.27 16 26 C -0.17 -2.07 10.21 -26.70 -0.27 -2.35 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.39 10.03 7.33 -40.82 -0.30 9.73 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.40 5.88 8.60 -40.82 -0.35 5.53 16 35 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.64 8.13 -51.93 -0.42 1.22 16 40 H 0.10 1.19 7.07 -51.93 -0.37 0.82 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -31.28 352.36 -8.45 -39.73 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.21 Total: 14.07 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.43 Total: -4.54 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.16 Total: -56.17 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.25 Total: -15.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.28 -8.45 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497866772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.066 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds