Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47464 * 2 1 4 4 C 1.53002 * 109.47014 * 240.00163 * 2 1 3 5 5 N 1.46496 * 109.47148 * 184.99771 * 4 2 1 6 6 C 1.36942 * 120.00135 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00101 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99767 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47017 * 90.00719 * 10 8 6 12 12 H 1.48505 * 109.46847 * 210.00680 * 10 8 6 13 13 H 1.48497 * 109.47048 * 330.00159 * 10 8 6 14 14 N 1.46502 * 109.47346 * 119.99962 * 2 1 3 15 15 C 1.34777 * 120.00010 * 274.99619 * 14 2 1 16 16 O 1.21280 * 120.00020 * 0.02562 * 15 14 2 17 17 C 1.50699 * 119.99888 * 179.97438 * 15 14 2 18 18 H 1.09007 * 110.90311 * 56.42220 * 17 15 14 19 19 C 1.55300 * 110.85298 * 292.83689 * 17 15 14 20 20 C 1.54940 * 100.94415 * 207.67553 * 19 17 15 21 21 O 1.43641 * 105.13614 * 36.44473 * 20 19 17 22 22 C 1.43245 * 109.97106 * 335.57089 * 21 20 19 23 23 H 1.09000 * 109.82609 * 121.22500 * 22 21 20 24 24 C 1.52997 * 109.83152 * 242.10448 * 22 21 20 25 25 C 1.53006 * 117.49816 * 7.29918 * 24 22 21 26 26 C 1.52992 * 117.50452 * 298.63609 * 24 22 21 27 27 H 1.09004 * 109.46419 * 299.99972 * 1 2 3 28 28 H 1.08998 * 109.47236 * 60.00061 * 1 2 3 29 29 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47045 * 304.99549 * 4 2 1 31 31 H 1.08998 * 109.46943 * 64.99605 * 4 2 1 32 32 H 0.96999 * 120.00484 * 0.02562 * 5 4 2 33 33 H 0.97000 * 119.99742 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99781 * 94.99760 * 14 2 1 35 35 H 1.09007 * 111.12449 * 325.59827 * 19 17 15 36 36 H 1.09003 * 111.12579 * 89.71310 * 19 17 15 37 37 H 1.08997 * 110.31031 * 277.52940 * 20 19 17 38 38 H 1.08999 * 110.30948 * 155.35829 * 20 19 17 39 39 H 1.09002 * 115.55002 * 152.95999 * 24 22 21 40 40 H 1.08999 * 117.49806 * 359.97438 * 25 24 22 41 41 H 1.08997 * 117.50136 * 145.01932 * 25 24 22 42 42 H 1.09002 * 117.50106 * 214.97772 * 26 24 22 43 43 H 1.09004 * 117.49599 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4388 -2.2069 7 1 3.6467 -1.8439 -3.0517 8 6 5.5672 -1.5379 -2.1516 9 7 6.2218 -1.0437 -1.1222 10 14 6.4999 -2.3727 -3.5382 11 1 6.8617 -1.3658 -4.5680 12 1 7.7357 -2.9953 -2.9990 13 1 5.6440 -3.4208 -4.1498 14 7 2.0184 -0.6906 1.1962 15 6 2.1472 -0.0182 2.3571 16 8 1.8584 1.1584 2.4117 17 6 2.6491 -0.7288 3.5877 18 1 3.6217 -1.1853 3.4037 19 6 1.6229 -1.7897 4.0706 20 6 1.9368 -1.8335 5.5872 21 8 2.2535 -0.4787 5.9440 22 6 2.7139 0.2360 4.7911 23 1 2.0714 1.0976 4.6094 24 6 4.1552 0.7004 5.0096 25 6 4.8760 0.2008 6.2634 26 6 4.4200 1.6593 6.1720 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.9824 -0.4628 -0.4317 33 1 7.1885 -1.1133 -1.0834 34 1 2.2491 -1.6318 1.1526 35 1 0.6004 -1.4577 3.8904 36 1 1.8076 -2.7566 3.6024 37 1 2.7899 -2.4844 5.7783 38 1 1.0652 -2.1775 6.1441 39 1 4.7497 0.8296 4.1052 40 1 4.3232 -0.4583 6.9327 41 1 5.9447 0.0019 6.1839 42 1 5.1890 2.4191 6.0325 43 1 3.5672 1.9596 6.7809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497866772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = -74.492809 kcal Electronic energy + Delta-G solvation = -22937.521736 eV Core-core repulsion = 19596.624275 eV Total energy + Delta-G solvation = -3340.897460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65241 -39.98327 -37.67827 -37.25041 -35.46957 -33.82647 -32.73287 -31.31409 -30.23070 -27.43510 -25.44321 -24.44724 -23.59850 -23.24118 -22.09237 -21.28462 -20.92006 -19.25247 -18.65879 -17.78822 -17.17549 -16.77503 -16.36007 -16.25446 -15.90551 -15.60839 -15.35157 -15.20028 -14.54169 -14.43114 -14.00512 -13.71031 -13.63959 -13.61228 -13.18724 -13.00212 -12.80225 -12.67376 -12.48825 -12.38643 -12.25653 -12.16102 -12.02608 -11.90282 -11.70281 -11.20739 -11.06113 -10.98514 -10.81587 -10.42944 -10.06260 -9.02139 -7.95233 -5.24845 1.48415 1.49732 1.57913 1.58591 2.14677 2.55771 2.77331 2.87199 3.39317 3.41524 3.58013 3.63894 3.83025 3.97918 4.04742 4.07011 4.13341 4.23572 4.27059 4.30183 4.42660 4.51065 4.59770 4.78132 4.79071 4.81675 4.85785 4.87367 4.93637 4.95242 5.02801 5.11490 5.11747 5.20901 5.30185 5.32059 5.50277 5.57745 6.01887 6.25572 6.55337 7.22262 7.33096 8.06374 8.30068 9.27804 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.004511 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.750885 B = 6205.528678 C = 7166.945047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.057 0.943 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.079 0.921 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.291 1.291 12 H -0.297 1.297 13 H -0.266 1.266 14 N -0.702 5.702 15 C 0.525 3.475 16 O -0.580 6.580 17 C -0.136 4.136 18 H 0.116 0.884 19 C -0.135 4.135 20 C 0.049 3.951 21 O -0.385 6.385 22 C 0.133 3.867 23 H 0.078 0.922 24 C -0.188 4.188 25 C -0.155 4.155 26 C -0.171 4.171 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.398 -3.193 13.212 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 H 0.075 0.925 4 C 0.019 3.981 5 N -0.387 5.387 6 C -0.377 4.377 7 H 0.097 0.903 8 C -0.265 4.265 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.219 1.219 12 H -0.224 1.224 13 H -0.191 1.191 14 N -0.352 5.352 15 C 0.312 3.688 16 O -0.461 6.461 17 C -0.158 4.158 18 H 0.134 0.866 19 C -0.173 4.173 20 C -0.027 4.027 21 O -0.305 6.305 22 C 0.075 3.925 23 H 0.096 0.904 24 C -0.207 4.207 25 C -0.191 4.191 26 C -0.208 4.208 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.634 -2.379 13.259 17.163 hybrid contribution 1.287 -0.358 -0.971 1.652 sum -9.347 -2.738 12.288 15.680 Atomic orbital electron populations 1.21995 0.92580 1.03228 1.02576 1.21109 0.95419 0.96067 0.84018 0.92509 1.21132 0.84022 0.98076 0.94882 1.42540 1.01866 1.69996 1.24319 1.19641 0.89893 1.28418 0.99704 0.90276 1.25536 0.97502 1.02989 1.00434 1.69824 1.07005 1.52776 1.32276 0.85161 0.77974 0.78140 0.78581 1.21868 1.22357 1.19093 1.45918 1.65962 1.14545 1.08783 1.20502 0.76620 0.86622 0.85026 1.90653 1.52388 1.17471 1.85569 1.22818 1.02476 0.97787 0.92686 0.86647 1.23274 0.98323 0.99115 0.96604 1.23581 1.01778 0.83377 0.93971 1.88384 1.85710 1.24116 1.32303 1.21834 0.93384 0.94050 0.83254 0.90396 1.22675 0.96612 1.07255 0.94126 1.22920 1.00201 0.97063 0.98949 1.22944 1.03531 0.93500 1.00789 0.93017 0.90277 0.90622 0.93954 0.94551 0.79419 0.94118 0.75407 0.89965 0.86737 0.90621 0.87408 0.88728 0.87580 0.88325 0.88325 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.48 71.98 0.68 -2.94 16 2 C 0.14 4.50 2.73 44.99 0.12 4.63 16 3 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 4 C 0.15 5.36 5.82 86.38 0.50 5.87 16 5 N -0.74 -36.07 5.43 -343.46 -1.87 -37.94 16 6 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 7 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 10 Si 0.97 44.96 29.55 68.60 2.03 46.99 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 N -0.70 -21.43 4.52 -442.52 -2.00 -23.43 16 15 C 0.53 16.89 7.11 87.66 0.62 17.51 16 16 O -0.58 -22.84 15.08 -3.03 -0.05 -22.88 16 17 C -0.14 -3.50 2.91 -10.28 -0.03 -3.53 16 18 H 0.12 2.98 7.85 -2.38 -0.02 2.96 16 19 C -0.14 -2.45 6.60 32.05 0.21 -2.24 16 20 C 0.05 0.84 7.78 72.65 0.56 1.40 16 21 O -0.39 -9.40 9.40 -148.98 -1.40 -10.80 16 22 C 0.13 3.65 3.34 31.06 0.10 3.75 16 23 H 0.08 2.55 6.78 -2.39 -0.02 2.53 16 24 C -0.19 -5.14 5.56 -10.79 -0.06 -5.20 16 25 C -0.15 -3.52 9.88 30.62 0.30 -3.21 16 26 C -0.17 -4.10 10.21 30.62 0.31 -3.78 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.37 19.75 7.33 -92.71 -0.68 19.07 16 33 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.41 11.52 8.60 -92.71 -0.80 10.72 16 35 H 0.08 1.52 8.03 -2.38 -0.02 1.50 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 2.91 8.13 -2.39 -0.02 2.89 16 40 H 0.11 2.32 7.07 -2.39 -0.02 2.30 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -67.48 352.36 1.17 -66.31 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.47 Total: 43.22 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.64 Total: -3.59 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -3.58 Total: -119.24 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.45 Total: -33.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.48 1.17 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497866772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.182 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds