Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00175 * 2 1 4 4 C 1.50699 * 119.99857 * 179.97438 * 2 1 3 5 5 H 1.09005 * 110.41649 * 127.54069 * 4 2 1 6 6 O 1.44423 * 110.37078 * 5.23332 * 4 2 1 7 7 C 1.44428 * 105.27555 * 200.65328 * 6 4 2 8 8 C 1.54802 * 104.85608 * 40.45658 * 7 6 4 9 9 C 1.54479 * 110.37708 * 249.84777 * 4 2 1 10 10 H 1.08992 * 110.50976 * 261.59360 * 9 4 2 11 11 C 1.50697 * 110.50801 * 24.16428 * 9 4 2 12 12 O 1.21283 * 119.99909 * 66.90587 * 11 9 4 13 13 N 1.34774 * 120.00259 * 246.90177 * 11 9 4 14 14 C 1.46501 * 120.00110 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.47258 * 34.99831 * 14 13 11 16 16 C 1.53003 * 109.46844 * 275.00090 * 14 13 11 17 17 C 1.53003 * 109.47134 * 155.00358 * 14 13 11 18 18 N 1.46500 * 109.46932 * 304.99556 * 17 14 13 19 19 C 1.36931 * 120.00076 * 179.72772 * 18 17 14 20 20 H 1.07999 * 119.99800 * 0.27111 * 19 18 17 21 21 C 1.38813 * 120.00102 * 180.28000 * 19 18 17 22 22 N 1.31623 * 120.00080 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00105 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47035 * 90.00264 * 23 21 19 25 25 H 1.48498 * 109.47129 * 210.00479 * 23 21 19 26 26 H 1.48502 * 109.46892 * 329.99984 * 23 21 19 27 27 H 1.07992 * 120.00293 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99641 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47110 * 275.04018 * 3 2 1 30 30 H 1.09001 * 109.47437 * 35.04146 * 3 2 1 31 31 H 1.09002 * 109.47703 * 155.04498 * 3 2 1 32 32 H 1.08995 * 110.37655 * 159.34262 * 7 6 4 33 33 H 1.09003 * 110.37135 * 281.56948 * 7 6 4 34 34 H 1.08996 * 110.61308 * 217.51443 * 8 7 6 35 35 H 1.08998 * 110.54920 * 94.70241 * 8 7 6 36 36 H 0.96998 * 120.00055 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.47374 * 60.00053 * 16 14 13 38 38 H 1.09001 * 109.47088 * 179.97438 * 16 14 13 39 39 H 1.08998 * 109.46982 * 299.99911 * 16 14 13 40 40 H 1.09003 * 109.46591 * 184.99823 * 17 14 13 41 41 H 1.08997 * 109.47229 * 64.99829 * 17 14 13 42 42 H 0.97001 * 119.99995 * 0.02562 * 18 17 14 43 43 H 0.96993 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 2.7926 -1.3236 -0.8094 6 8 1.1471 -2.4147 -0.1224 7 6 1.8694 -3.5617 0.3763 8 6 2.6370 -3.0395 1.6150 9 6 2.7644 -1.5209 1.3602 10 1 3.8132 -1.2305 1.2994 11 6 2.0645 -0.7429 2.4444 12 8 0.9392 -1.0473 2.7792 13 7 2.6889 0.2912 3.0422 14 6 2.0086 1.0472 4.0966 15 1 1.3839 0.3726 4.6821 16 6 1.1342 2.1315 3.4636 17 6 3.0493 1.6995 5.0090 18 7 3.9611 0.6735 5.5213 19 6 4.9852 1.0246 6.3597 20 1 5.1181 2.0572 6.6467 21 6 5.8526 0.0534 6.8404 22 7 6.8374 0.3909 7.6459 23 14 5.6224 -1.7327 6.3442 24 1 6.3973 -2.0067 5.1074 25 1 6.1045 -2.6159 7.4363 26 1 4.1823 -1.9954 6.0946 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.1670 1.6649 -1.0237 30 1 1.5166 2.0405 0.5900 31 1 3.0521 1.1539 0.4336 32 1 1.1754 -4.3511 0.6646 33 1 2.5674 -3.9274 -0.3768 34 1 3.6228 -3.5002 1.6779 35 1 2.0677 -3.2275 2.5253 36 1 3.5887 0.5349 2.7742 37 1 0.3928 1.6669 2.8136 38 1 0.6277 2.6937 4.2481 39 1 1.7589 2.8061 2.8781 40 1 2.5458 2.1876 5.8435 41 1 3.6157 2.4393 4.4434 42 1 3.8419 -0.2539 5.2631 43 1 7.4432 -0.2878 7.9821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497935901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -51.858645 kcal Electronic energy + Delta-G solvation = -23694.785624 eV Core-core repulsion = 20354.869655 eV Total energy + Delta-G solvation = -3339.915969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70735 -38.58208 -36.20904 -35.12009 -33.72099 -32.55075 -31.33186 -30.28406 -28.68868 -27.24123 -25.99625 -24.17795 -22.65612 -22.02933 -20.64251 -20.18398 -18.74480 -17.71963 -17.27442 -16.44094 -15.91752 -15.69845 -15.35211 -14.88081 -14.44476 -14.10950 -13.96578 -13.67847 -13.31698 -13.19289 -12.88270 -12.72463 -12.40343 -12.38975 -12.18118 -12.10819 -11.86001 -11.67649 -11.39083 -11.29368 -11.09421 -10.95885 -10.92079 -10.51102 -10.18966 -10.00748 -9.65785 -9.51835 -9.05208 -8.96886 -8.75346 -7.30790 -5.82853 -3.18841 2.19743 2.80699 3.29876 3.35259 3.36567 3.40509 3.67324 4.29525 4.53279 4.62041 4.70509 4.86291 4.95796 5.04714 5.09209 5.14074 5.23087 5.32682 5.39823 5.44356 5.46236 5.54359 5.56271 5.57893 5.67132 5.81312 5.87857 5.90134 5.93736 6.00957 6.05455 6.31511 6.38474 6.49341 6.58503 6.61679 6.85189 6.94653 7.77323 7.92804 8.35922 8.48334 9.14795 9.87022 10.06742 11.35429 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.005651 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.596283 B = 4953.962673 C = 5935.445100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C -0.112 4.112 4 C 0.134 3.866 5 H 0.083 0.917 6 O -0.359 6.359 7 C 0.050 3.950 8 C -0.141 4.141 9 C -0.140 4.140 10 H 0.100 0.900 11 C 0.529 3.471 12 O -0.532 6.532 13 N -0.715 5.715 14 C 0.132 3.868 15 H 0.085 0.915 16 C -0.156 4.156 17 C 0.149 3.851 18 N -0.755 5.755 19 C -0.246 4.246 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.033 0.967 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 -2.266 -18.114 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C -0.168 4.168 4 C 0.076 3.924 5 H 0.100 0.900 6 O -0.278 6.278 7 C -0.027 4.027 8 C -0.179 4.179 9 C -0.162 4.162 10 H 0.119 0.881 11 C 0.314 3.686 12 O -0.409 6.409 13 N -0.366 5.366 14 C 0.027 3.973 15 H 0.103 0.897 16 C -0.215 4.215 17 C 0.021 3.979 18 N -0.401 5.401 19 C -0.376 4.376 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.711 3.289 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.236 0.764 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.492 -2.324 -17.779 20.775 hybrid contribution 0.753 -1.222 -0.162 1.444 sum -9.739 -3.546 -17.941 20.720 Atomic orbital electron populations 1.23644 0.95327 1.01981 0.97319 1.21389 0.95835 0.93679 1.04144 1.20788 1.00134 0.94043 1.01875 1.21580 0.90376 0.86473 0.93997 0.89965 1.89131 1.37234 1.16885 1.84554 1.23422 0.95602 0.89674 0.93997 1.22987 1.01926 0.92372 1.00658 1.22740 1.01189 0.96906 0.95361 0.88128 1.19989 0.86450 0.80101 0.82057 1.90677 1.18477 1.67884 1.63818 1.46113 1.19254 1.32484 1.38765 1.21255 0.94487 0.93355 0.88189 0.89699 1.22099 0.99758 0.98413 1.01228 1.20964 0.90348 0.91916 0.94637 1.42701 1.34189 1.05080 1.58125 1.19054 1.02957 0.95745 1.19807 0.89131 1.24657 0.97543 0.97339 0.99382 1.69695 1.18668 1.32829 1.36816 0.86594 0.77508 0.86781 0.77988 1.21074 1.21625 1.20366 0.87404 0.88804 0.91644 0.91271 0.91981 0.88814 0.92137 0.89723 0.89404 0.76411 0.92265 0.91713 0.92495 0.94133 0.94949 0.80463 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 13.31 29.02 0.39 -1.43 16 2 C -0.15 -1.76 3.78 -101.07 -0.38 -2.14 16 3 C -0.11 -1.08 9.66 36.00 0.35 -0.73 16 4 C 0.13 1.55 3.53 -27.11 -0.10 1.46 16 5 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 6 O -0.36 -4.68 9.81 -35.23 -0.35 -5.02 16 7 C 0.05 0.52 7.64 38.11 0.29 0.81 16 8 C -0.14 -1.65 6.63 -24.99 -0.17 -1.81 16 9 C -0.14 -1.71 3.24 -90.21 -0.29 -2.00 16 10 H 0.10 1.03 8.00 -51.93 -0.42 0.61 16 11 C 0.53 8.00 4.77 -10.99 -0.05 7.95 16 12 O -0.53 -9.77 15.59 5.55 0.09 -9.69 16 13 N -0.71 -10.42 4.52 -53.80 -0.24 -10.66 16 14 C 0.13 2.05 2.73 -67.93 -0.19 1.87 16 15 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 16 C -0.16 -2.00 9.48 37.16 0.35 -1.64 16 17 C 0.15 2.72 5.82 -4.04 -0.02 2.69 16 18 N -0.75 -17.34 5.24 -59.91 -0.31 -17.65 16 19 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 23 Si 0.88 21.91 27.73 -169.99 -4.71 17.19 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 27 H 0.11 1.50 6.90 -52.49 -0.36 1.14 16 28 H 0.09 1.03 8.05 -52.49 -0.42 0.61 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.21 7.38 -51.93 -0.38 0.83 16 36 H 0.40 5.42 8.50 -40.82 -0.35 5.07 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.34 5.20 -40.82 -0.21 8.13 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -33.13 349.58 -6.75 -39.87 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.19 Total: 10.68 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.22 Total: -56.45 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.26 Total: -14.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.13 -6.75 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497935901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.986 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds