Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00175 * 2 1 4 4 C 1.50699 * 119.99857 * 179.97438 * 2 1 3 5 5 H 1.09005 * 110.41649 * 127.54069 * 4 2 1 6 6 O 1.44423 * 110.37078 * 5.23332 * 4 2 1 7 7 C 1.44428 * 105.27555 * 200.65328 * 6 4 2 8 8 C 1.54802 * 104.85608 * 40.45658 * 7 6 4 9 9 C 1.54479 * 110.37708 * 249.84777 * 4 2 1 10 10 H 1.08992 * 110.50976 * 261.59360 * 9 4 2 11 11 C 1.50697 * 110.50801 * 24.16428 * 9 4 2 12 12 O 1.21283 * 119.99909 * 66.90587 * 11 9 4 13 13 N 1.34774 * 120.00259 * 246.90177 * 11 9 4 14 14 C 1.46501 * 120.00110 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.47258 * 34.99831 * 14 13 11 16 16 C 1.53003 * 109.46844 * 275.00090 * 14 13 11 17 17 C 1.53003 * 109.47134 * 155.00358 * 14 13 11 18 18 N 1.46500 * 109.46932 * 304.99556 * 17 14 13 19 19 C 1.36931 * 120.00076 * 179.72772 * 18 17 14 20 20 H 1.07999 * 119.99800 * 0.27111 * 19 18 17 21 21 C 1.38813 * 120.00102 * 180.28000 * 19 18 17 22 22 N 1.31623 * 120.00080 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00105 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47035 * 90.00264 * 23 21 19 25 25 H 1.48498 * 109.47129 * 210.00479 * 23 21 19 26 26 H 1.48502 * 109.46892 * 329.99984 * 23 21 19 27 27 H 1.07992 * 120.00293 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99641 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47110 * 275.04018 * 3 2 1 30 30 H 1.09001 * 109.47437 * 35.04146 * 3 2 1 31 31 H 1.09002 * 109.47703 * 155.04498 * 3 2 1 32 32 H 1.08995 * 110.37655 * 159.34262 * 7 6 4 33 33 H 1.09003 * 110.37135 * 281.56948 * 7 6 4 34 34 H 1.08996 * 110.61308 * 217.51443 * 8 7 6 35 35 H 1.08998 * 110.54920 * 94.70241 * 8 7 6 36 36 H 0.96998 * 120.00055 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.47374 * 60.00053 * 16 14 13 38 38 H 1.09001 * 109.47088 * 179.97438 * 16 14 13 39 39 H 1.08998 * 109.46982 * 299.99911 * 16 14 13 40 40 H 1.09003 * 109.46591 * 184.99823 * 17 14 13 41 41 H 1.08997 * 109.47229 * 64.99829 * 17 14 13 42 42 H 0.97001 * 119.99995 * 0.02562 * 18 17 14 43 43 H 0.96993 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 2.7926 -1.3236 -0.8094 6 8 1.1471 -2.4147 -0.1224 7 6 1.8694 -3.5617 0.3763 8 6 2.6370 -3.0395 1.6150 9 6 2.7644 -1.5209 1.3602 10 1 3.8132 -1.2305 1.2994 11 6 2.0645 -0.7429 2.4444 12 8 0.9392 -1.0473 2.7792 13 7 2.6889 0.2912 3.0422 14 6 2.0086 1.0472 4.0966 15 1 1.3839 0.3726 4.6821 16 6 1.1342 2.1315 3.4636 17 6 3.0493 1.6995 5.0090 18 7 3.9611 0.6735 5.5213 19 6 4.9852 1.0246 6.3597 20 1 5.1181 2.0572 6.6467 21 6 5.8526 0.0534 6.8404 22 7 6.8374 0.3909 7.6459 23 14 5.6224 -1.7327 6.3442 24 1 6.3973 -2.0067 5.1074 25 1 6.1045 -2.6159 7.4363 26 1 4.1823 -1.9954 6.0946 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.1670 1.6649 -1.0237 30 1 1.5166 2.0405 0.5900 31 1 3.0521 1.1539 0.4336 32 1 1.1754 -4.3511 0.6646 33 1 2.5674 -3.9274 -0.3768 34 1 3.6228 -3.5002 1.6779 35 1 2.0677 -3.2275 2.5253 36 1 3.5887 0.5349 2.7742 37 1 0.3928 1.6669 2.8136 38 1 0.6277 2.6937 4.2481 39 1 1.7589 2.8061 2.8781 40 1 2.5458 2.1876 5.8435 41 1 3.6157 2.4393 4.4434 42 1 3.8419 -0.2539 5.2631 43 1 7.4432 -0.2878 7.9821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497935901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -75.390282 kcal Electronic energy + Delta-G solvation = -23695.806032 eV Core-core repulsion = 20354.869655 eV Total energy + Delta-G solvation = -3340.936378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72891 -39.67886 -37.67059 -35.98984 -35.46012 -33.65834 -33.08693 -31.62446 -29.55525 -28.07137 -27.60874 -25.20624 -24.08399 -23.39667 -21.91361 -21.29567 -19.90945 -19.48278 -18.31408 -17.50112 -16.92550 -16.78292 -16.68169 -16.29163 -15.90977 -15.51776 -15.07053 -14.84588 -14.63827 -14.27086 -14.17518 -13.94980 -13.86262 -13.69852 -13.28344 -13.13258 -12.89796 -12.86311 -12.63968 -12.53854 -12.26362 -12.22161 -12.17234 -11.90310 -11.81967 -11.74139 -11.03933 -10.87017 -10.65446 -10.06908 -9.84839 -9.32501 -8.04157 -5.37440 1.29277 1.33420 1.37858 1.44255 1.67293 2.21837 2.45309 2.84911 3.27726 3.39222 3.53561 3.71589 3.80212 3.96532 4.01669 4.16785 4.21391 4.27482 4.30293 4.34828 4.44741 4.58117 4.66815 4.77902 4.81082 4.83001 4.86663 4.88077 4.93808 5.00157 5.09359 5.11855 5.15983 5.33339 5.59899 5.62824 5.73394 5.75281 6.09281 6.19524 6.62892 7.05649 7.33256 7.81211 7.99724 9.17260 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.005651 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.596283 B = 4953.962673 C = 5935.445100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.110 4.110 4 C 0.130 3.870 5 H 0.110 0.890 6 O -0.385 6.385 7 C 0.048 3.952 8 C -0.143 4.143 9 C -0.141 4.141 10 H 0.127 0.873 11 C 0.527 3.473 12 O -0.570 6.570 13 N -0.710 5.710 14 C 0.142 3.858 15 H 0.060 0.940 16 C -0.145 4.145 17 C 0.149 3.851 18 N -0.756 5.756 19 C -0.231 4.231 20 H 0.062 0.938 21 C -0.058 4.058 22 N -0.981 5.981 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.299 1.299 26 H -0.268 1.268 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.409 0.591 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.364 0.636 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -2.652 -20.261 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.072 3.928 5 H 0.128 0.872 6 O -0.304 6.304 7 C -0.028 4.028 8 C -0.182 4.182 9 C -0.162 4.162 10 H 0.145 0.855 11 C 0.314 3.686 12 O -0.448 6.448 13 N -0.362 5.362 14 C 0.037 3.963 15 H 0.078 0.922 16 C -0.204 4.204 17 C 0.022 3.978 18 N -0.402 5.402 19 C -0.362 4.362 20 H 0.080 0.920 21 C -0.250 4.250 22 N -0.632 5.632 23 Si 0.777 3.223 24 H -0.191 1.191 25 H -0.226 1.226 26 H -0.194 1.194 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.197 0.803 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.190 -2.689 -19.968 22.579 hybrid contribution 0.605 -1.012 0.537 1.295 sum -9.585 -3.701 -19.431 21.981 Atomic orbital electron populations 1.23599 0.95957 1.01456 0.99294 1.21698 0.95754 0.94841 1.02479 1.20824 1.00043 0.92779 1.03053 1.21799 0.90596 0.86015 0.94360 0.87226 1.89120 1.38554 1.17976 1.84764 1.23582 0.95971 0.89035 0.94198 1.23028 1.02885 0.92311 0.99930 1.22848 1.02261 0.96719 0.94412 0.85488 1.20522 0.86049 0.79815 0.82242 1.90667 1.20289 1.68805 1.65084 1.46082 1.19543 1.32376 1.38219 1.21040 0.93569 0.93581 0.88132 0.92216 1.22000 0.99321 0.97665 1.01411 1.21118 0.90253 0.91278 0.95115 1.42691 1.33818 1.06169 1.57539 1.19042 1.03451 0.94446 1.19290 0.91986 1.25409 0.97654 1.01885 1.00066 1.69867 1.20172 1.34202 1.38916 0.85506 0.77934 0.81015 0.77871 1.19129 1.22554 1.19386 0.89548 0.87907 0.89895 0.91549 0.91163 0.88688 0.89275 0.87383 0.92259 0.75489 0.92889 0.90732 0.90598 0.94312 0.93451 0.80295 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 13.31 67.78 0.90 -3.16 16 2 C -0.15 -3.18 3.78 -16.49 -0.06 -3.24 16 3 C -0.11 -1.82 9.66 71.24 0.69 -1.13 16 4 C 0.13 2.69 3.53 30.35 0.11 2.79 16 5 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 6 O -0.38 -9.47 9.81 -148.98 -1.46 -10.93 16 7 C 0.05 0.91 7.64 72.60 0.55 1.46 16 8 C -0.14 -3.03 6.63 31.72 0.21 -2.82 16 9 C -0.14 -3.06 3.24 -10.53 -0.03 -3.09 16 10 H 0.13 2.06 8.00 -2.39 -0.02 2.05 16 11 C 0.53 15.08 4.77 87.66 0.42 15.50 16 12 O -0.57 -20.74 15.59 -3.04 -0.05 -20.79 16 13 N -0.71 -19.17 4.52 -442.53 -2.00 -21.17 16 14 C 0.14 4.20 2.73 44.99 0.12 4.33 16 15 H 0.06 2.10 7.58 -2.39 -0.02 2.09 16 16 C -0.15 -3.41 9.48 71.98 0.68 -2.72 16 17 C 0.15 5.18 5.82 86.38 0.50 5.69 16 18 N -0.76 -33.71 5.24 -343.45 -1.80 -35.51 16 19 C -0.23 -12.74 10.47 84.03 0.88 -11.86 16 20 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 21 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 22 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 23 Si 0.95 44.81 27.73 68.60 1.90 46.71 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.27 -12.09 6.52 99.48 0.65 -11.45 16 27 H 0.09 2.46 6.90 -2.91 -0.02 2.44 16 28 H 0.10 2.21 8.05 -2.91 -0.02 2.19 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.07 1.04 7.94 -2.39 -0.02 1.02 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.59 7.38 -2.39 -0.02 1.57 16 36 H 0.41 9.81 8.50 -92.71 -0.79 9.02 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.36 16.04 5.20 -92.71 -0.48 15.55 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -72.36 349.58 2.00 -70.35 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.33 Total: 33.82 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.44 Total: -1.16 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.50 Total: -118.01 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.51 Total: -31.72 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Total: -72.36 2.00 -70.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497935901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.037 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds