Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 C 1.53001 * 109.46785 * 240.00153 * 2 1 3 5 5 N 1.46498 * 109.46672 * 185.00195 * 4 2 1 6 6 C 1.36940 * 119.99720 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00147 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99984 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47240 * 179.97438 * 10 8 6 12 12 H 1.48507 * 109.47097 * 60.00184 * 10 8 6 13 13 H 1.48505 * 109.47172 * 300.00406 * 10 8 6 14 14 N 1.46501 * 109.46855 * 120.00112 * 2 1 3 15 15 C 1.34778 * 120.00079 * 274.99645 * 14 2 1 16 16 O 1.21281 * 119.99914 * 0.02562 * 15 14 2 17 17 C 1.50695 * 119.99943 * 180.02562 * 15 14 2 18 18 H 1.09003 * 115.55650 * 59.92283 * 17 15 14 19 19 C 1.53057 * 117.50668 * 205.63144 * 17 15 14 20 20 C 1.52722 * 117.50515 * 274.21762 * 17 15 14 21 21 C 1.53249 * 117.83484 * 144.67551 * 20 17 15 22 22 C 1.53334 * 108.48154 * 265.31818 * 21 20 17 23 23 O 1.42860 * 109.32077 * 306.01630 * 22 21 20 24 24 C 1.42877 * 114.52074 * 64.36415 * 23 22 21 25 25 C 1.53247 * 117.83453 * 0.39631 * 20 17 15 26 26 H 1.09000 * 109.46982 * 300.00056 * 1 2 3 27 27 H 1.08999 * 109.47420 * 59.99787 * 1 2 3 28 28 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47043 * 65.00070 * 4 2 1 30 30 H 1.08997 * 109.47223 * 304.99601 * 4 2 1 31 31 H 0.96993 * 120.00731 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00512 * 359.97438 * 9 8 6 33 33 H 0.97001 * 119.99609 * 95.00607 * 14 2 1 34 34 H 1.09003 * 117.50649 * 214.93516 * 19 17 15 35 35 H 1.08999 * 117.50477 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.63735 * 25.01476 * 21 20 17 37 37 H 1.08994 * 109.63810 * 145.61820 * 21 20 17 38 38 H 1.09004 * 109.49747 * 186.05954 * 22 21 20 39 39 H 1.09000 * 109.52117 * 65.98472 * 22 21 20 40 40 H 1.08996 * 109.49978 * 175.67893 * 24 23 22 41 41 H 1.09002 * 109.51694 * 55.60293 * 24 23 22 42 42 H 1.09001 * 109.63243 * 214.37673 * 25 20 17 43 43 H 1.08996 * 109.63280 * 334.77547 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2073 7 1 3.6467 -1.8430 -3.0521 8 6 5.5673 -1.5371 -2.1519 9 7 6.2217 -1.0439 -1.1220 10 14 6.5000 -2.3720 -3.5385 11 1 7.9548 -2.3469 -3.2417 12 1 6.2426 -1.6524 -4.8118 13 1 6.0441 -3.7797 -3.6645 14 7 2.0183 -0.6906 1.1962 15 6 2.1471 -0.0183 2.3572 16 8 1.8583 1.1583 2.4117 17 6 2.6499 -0.7286 3.5874 18 1 3.6465 -1.1625 3.5056 19 6 2.2335 -0.1657 4.9485 20 6 1.6247 -1.4722 4.4410 21 6 2.0652 -2.7768 5.1138 22 6 1.6674 -3.9489 4.2088 23 8 0.2723 -3.8653 3.9130 24 6 -0.1053 -2.7144 3.1552 25 6 0.1625 -1.4518 3.9829 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -0.1583 -2.1370 30 1 1.6054 -1.7198 -1.2952 31 1 3.9824 -0.4623 -0.4320 32 1 5.7374 -0.6107 -0.4018 33 1 2.2490 -1.6318 1.1525 34 1 2.9560 -0.2297 5.7621 35 1 1.5963 0.7186 4.9539 36 1 3.1465 -2.7710 5.2515 37 1 1.5706 -2.8758 6.0800 38 1 1.8755 -4.8894 4.7191 39 1 2.2392 -3.9037 3.2819 40 1 -1.1661 -2.7714 2.9114 41 1 0.4780 -2.6768 2.2352 42 1 -0.4938 -1.4384 4.8531 43 1 -0.0182 -0.5659 3.3742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497999652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -58.417020 kcal Electronic energy + Delta-G solvation = -23437.147918 eV Core-core repulsion = 20096.947556 eV Total energy + Delta-G solvation = -3340.200362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62813 -38.90024 -36.88101 -35.90764 -33.93784 -31.53292 -31.32319 -30.32035 -29.74861 -25.55345 -24.61155 -23.92830 -22.95985 -22.69664 -20.79477 -20.25960 -18.99654 -17.34874 -17.05155 -16.43021 -16.19840 -15.94380 -15.21869 -15.03468 -14.69936 -14.09931 -14.09097 -13.71059 -13.54006 -13.38350 -13.14144 -12.70512 -12.53666 -12.44782 -12.21063 -12.10038 -11.61325 -11.53158 -11.23614 -10.91796 -10.77538 -10.66291 -10.57030 -10.53231 -10.16458 -10.01942 -9.66135 -9.36553 -9.23419 -8.95882 -8.79187 -7.07548 -6.15077 -3.15861 2.70570 3.29803 3.48685 3.52168 3.58761 3.69755 3.71400 4.36977 4.50302 4.60649 4.62322 4.69362 4.81365 5.00231 5.05800 5.20677 5.28821 5.36577 5.37939 5.41790 5.47403 5.50950 5.52457 5.58712 5.65076 5.69286 5.83670 5.90850 5.91655 5.92783 5.95891 6.03483 6.04582 6.27002 6.37568 6.58584 6.84040 7.05064 7.75075 7.76889 8.45073 8.70764 9.16477 10.03317 10.17923 11.32845 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004730 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.063537 B = 5918.839076 C = 6280.151404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.742 5.742 6 C -0.335 4.335 7 H 0.065 0.935 8 C -0.043 4.043 9 N -0.942 5.942 10 Si 1.081 2.919 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.295 1.295 14 N -0.707 5.707 15 C 0.546 3.454 16 O -0.546 6.546 17 C -0.180 4.180 18 H 0.129 0.871 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.117 4.117 22 C 0.061 3.939 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.369 0.631 32 H 0.254 0.746 33 H 0.402 0.598 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -3.524 12.334 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.104 0.896 4 C 0.022 3.978 5 N -0.388 5.388 6 C -0.466 4.466 7 H 0.083 0.917 8 C -0.241 4.241 9 N -0.587 5.587 10 Si 0.911 3.089 11 H -0.210 1.210 12 H -0.222 1.222 13 H -0.222 1.222 14 N -0.358 5.358 15 C 0.332 3.668 16 O -0.424 6.424 17 C -0.201 4.201 18 H 0.147 0.853 19 C -0.173 4.173 20 C -0.108 4.108 21 C -0.154 4.154 22 C -0.016 4.016 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.158 4.158 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.202 0.798 32 H 0.065 0.935 33 H 0.237 0.763 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.207 -3.344 11.654 16.511 hybrid contribution -0.927 0.408 0.516 1.136 sum -12.134 -2.936 12.170 17.435 Atomic orbital electron populations 1.22094 0.95381 1.01866 1.02185 1.21275 0.93514 0.97930 0.84620 0.89650 1.20914 0.86292 0.97008 0.93570 1.42350 1.00398 1.71130 1.24964 1.20022 0.92242 1.33865 1.00439 0.91725 1.25793 0.93409 1.01631 1.03291 1.70886 1.37394 1.40686 1.09715 0.83236 0.76271 0.75292 0.74080 1.21023 1.22242 1.22243 1.46002 1.66343 1.14255 1.09175 1.19520 0.76906 0.86575 0.83753 1.90672 1.50701 1.15863 1.85205 1.22463 1.00906 1.05182 0.91523 0.85281 1.23013 1.02760 0.96705 0.94821 1.21491 0.93639 0.93814 1.01832 1.21847 1.01605 0.92697 0.99276 1.22623 0.82345 0.98147 0.98500 1.87854 1.24370 1.43735 1.74196 1.22590 1.00771 0.84539 0.93382 1.21841 0.93692 0.99273 1.00962 0.92468 0.91574 0.92533 0.94824 0.95726 0.79780 0.93461 0.76275 0.87910 0.87690 0.90342 0.90283 0.88699 0.92688 0.88848 0.92763 0.90368 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 2 C 0.13 2.18 2.73 -67.93 -0.19 1.99 16 3 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 4 C 0.15 2.93 5.82 -4.04 -0.02 2.90 16 5 N -0.74 -18.29 5.43 -59.91 -0.33 -18.62 16 6 C -0.33 -9.32 9.99 -15.06 -0.15 -9.47 16 7 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 8 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 9 N -0.94 -28.95 13.70 55.49 0.76 -28.19 16 10 Si 1.08 25.67 29.92 -169.99 -5.09 20.58 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.71 -11.06 4.40 -53.80 -0.24 -11.30 16 15 C 0.55 8.77 5.81 -10.99 -0.06 8.70 16 16 O -0.55 -10.50 16.23 5.56 0.09 -10.41 16 17 C -0.18 -2.34 5.87 -91.89 -0.54 -2.88 16 18 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16 19 C -0.14 -1.53 9.52 -26.80 -0.26 -1.79 16 20 C -0.11 -1.15 2.03 -154.49 -0.31 -1.47 16 21 C -0.12 -1.08 5.92 -26.43 -0.16 -1.23 16 22 C 0.06 0.60 6.84 37.33 0.26 0.86 16 23 O -0.38 -4.49 10.69 -35.23 -0.38 -4.87 16 24 C 0.06 0.69 6.84 37.33 0.26 0.94 16 25 C -0.12 -1.30 5.58 -26.44 -0.15 -1.44 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.37 9.47 6.17 -40.82 -0.25 9.22 16 32 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 33 H 0.40 6.15 8.32 -40.82 -0.34 5.81 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.29 7.90 -51.93 -0.41 0.88 16 36 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.62 7.74 -51.93 -0.40 0.22 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.94 6.84 -51.93 -0.36 0.58 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -32.80 348.57 -8.12 -40.91 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.13 Total: 12.59 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.07 Total: -5.96 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.20 Total: -58.10 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.29 Total: -15.28 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.80 -8.12 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497999652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.504 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds