Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 C 1.53001 * 109.46785 * 240.00153 * 2 1 3 5 5 N 1.46498 * 109.46672 * 185.00195 * 4 2 1 6 6 C 1.36940 * 119.99720 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00147 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99984 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47240 * 179.97438 * 10 8 6 12 12 H 1.48507 * 109.47097 * 60.00184 * 10 8 6 13 13 H 1.48505 * 109.47172 * 300.00406 * 10 8 6 14 14 N 1.46501 * 109.46855 * 120.00112 * 2 1 3 15 15 C 1.34778 * 120.00079 * 274.99645 * 14 2 1 16 16 O 1.21281 * 119.99914 * 0.02562 * 15 14 2 17 17 C 1.50695 * 119.99943 * 180.02562 * 15 14 2 18 18 H 1.09003 * 115.55650 * 59.92283 * 17 15 14 19 19 C 1.53057 * 117.50668 * 205.63144 * 17 15 14 20 20 C 1.52722 * 117.50515 * 274.21762 * 17 15 14 21 21 C 1.53249 * 117.83484 * 144.67551 * 20 17 15 22 22 C 1.53334 * 108.48154 * 265.31818 * 21 20 17 23 23 O 1.42860 * 109.32077 * 306.01630 * 22 21 20 24 24 C 1.42877 * 114.52074 * 64.36415 * 23 22 21 25 25 C 1.53247 * 117.83453 * 0.39631 * 20 17 15 26 26 H 1.09000 * 109.46982 * 300.00056 * 1 2 3 27 27 H 1.08999 * 109.47420 * 59.99787 * 1 2 3 28 28 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47043 * 65.00070 * 4 2 1 30 30 H 1.08997 * 109.47223 * 304.99601 * 4 2 1 31 31 H 0.96993 * 120.00731 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00512 * 359.97438 * 9 8 6 33 33 H 0.97001 * 119.99609 * 95.00607 * 14 2 1 34 34 H 1.09003 * 117.50649 * 214.93516 * 19 17 15 35 35 H 1.08999 * 117.50477 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.63735 * 25.01476 * 21 20 17 37 37 H 1.08994 * 109.63810 * 145.61820 * 21 20 17 38 38 H 1.09004 * 109.49747 * 186.05954 * 22 21 20 39 39 H 1.09000 * 109.52117 * 65.98472 * 22 21 20 40 40 H 1.08996 * 109.49978 * 175.67893 * 24 23 22 41 41 H 1.09002 * 109.51694 * 55.60293 * 24 23 22 42 42 H 1.09001 * 109.63243 * 214.37673 * 25 20 17 43 43 H 1.08996 * 109.63280 * 334.77547 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2073 7 1 3.6467 -1.8430 -3.0521 8 6 5.5673 -1.5371 -2.1519 9 7 6.2217 -1.0439 -1.1220 10 14 6.5000 -2.3720 -3.5385 11 1 7.9548 -2.3469 -3.2417 12 1 6.2426 -1.6524 -4.8118 13 1 6.0441 -3.7797 -3.6645 14 7 2.0183 -0.6906 1.1962 15 6 2.1471 -0.0183 2.3572 16 8 1.8583 1.1583 2.4117 17 6 2.6499 -0.7286 3.5874 18 1 3.6465 -1.1625 3.5056 19 6 2.2335 -0.1657 4.9485 20 6 1.6247 -1.4722 4.4410 21 6 2.0652 -2.7768 5.1138 22 6 1.6674 -3.9489 4.2088 23 8 0.2723 -3.8653 3.9130 24 6 -0.1053 -2.7144 3.1552 25 6 0.1625 -1.4518 3.9829 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -0.1583 -2.1370 30 1 1.6054 -1.7198 -1.2952 31 1 3.9824 -0.4623 -0.4320 32 1 5.7374 -0.6107 -0.4018 33 1 2.2490 -1.6318 1.1525 34 1 2.9560 -0.2297 5.7621 35 1 1.5963 0.7186 4.9539 36 1 3.1465 -2.7710 5.2515 37 1 1.5706 -2.8758 6.0800 38 1 1.8755 -4.8894 4.7191 39 1 2.2392 -3.9037 3.2819 40 1 -1.1661 -2.7714 2.9114 41 1 0.4780 -2.6768 2.2352 42 1 -0.4938 -1.4384 4.8531 43 1 -0.0182 -0.5659 3.3742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497999652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -80.781000 kcal Electronic energy + Delta-G solvation = -23438.117693 eV Core-core repulsion = 20096.947556 eV Total energy + Delta-G solvation = -3341.170137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70389 -39.99615 -38.13558 -37.19335 -35.76135 -33.06971 -32.23382 -31.59196 -30.99694 -27.21292 -25.82703 -24.75327 -24.67086 -23.77989 -22.11322 -21.47686 -20.01054 -19.37779 -18.25993 -17.56786 -17.14645 -17.03824 -16.61480 -16.10775 -15.92801 -15.81841 -15.36530 -15.27668 -14.80146 -14.41433 -14.19999 -14.07328 -13.86041 -13.48497 -13.42904 -13.09681 -12.90414 -12.68149 -12.60497 -12.33407 -12.17144 -12.01304 -11.88874 -11.74697 -11.42408 -11.28900 -11.15746 -10.98194 -10.81252 -10.29199 -10.12011 -9.15664 -8.41565 -5.36619 1.47436 1.58565 1.68145 1.84466 2.08912 2.59979 2.69977 2.91150 3.38429 3.42561 3.59428 3.63452 3.71432 3.78991 3.86331 4.01402 4.05576 4.16367 4.24684 4.35782 4.44841 4.47650 4.60159 4.68677 4.70654 4.73662 4.75271 4.78522 4.82236 4.88299 4.98507 5.01103 5.05993 5.15629 5.18963 5.22325 5.47300 5.57215 6.23445 6.45844 6.47343 7.04497 7.16743 7.95030 8.06488 9.09336 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004730 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.063537 B = 5918.839076 C = 6280.151404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.057 0.943 4 C 0.151 3.849 5 N -0.754 5.754 6 C -0.335 4.335 7 H 0.070 0.930 8 C -0.102 4.102 9 N -0.973 5.973 10 Si 1.129 2.871 11 H -0.295 1.295 12 H -0.280 1.280 13 H -0.274 1.274 14 N -0.702 5.702 15 C 0.545 3.455 16 O -0.583 6.583 17 C -0.199 4.199 18 H 0.132 0.868 19 C -0.130 4.130 20 C -0.091 4.091 21 C -0.112 4.112 22 C 0.055 3.945 23 O -0.395 6.395 24 C 0.064 3.936 25 C -0.118 4.118 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.360 0.640 32 H 0.241 0.759 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 -4.956 12.633 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 H 0.075 0.925 4 C 0.025 3.975 5 N -0.399 5.399 6 C -0.466 4.466 7 H 0.088 0.912 8 C -0.294 4.294 9 N -0.621 5.621 10 Si 0.953 3.047 11 H -0.221 1.221 12 H -0.206 1.206 13 H -0.200 1.200 14 N -0.352 5.352 15 C 0.333 3.667 16 O -0.464 6.464 17 C -0.220 4.220 18 H 0.150 0.850 19 C -0.167 4.167 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.021 4.021 23 O -0.314 6.314 24 C -0.012 4.012 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.192 0.808 32 H 0.051 0.949 33 H 0.240 0.760 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.203 -4.793 11.945 17.736 hybrid contribution -0.707 0.878 0.413 1.201 sum -12.910 -3.915 12.358 18.296 Atomic orbital electron populations 1.21995 0.92396 1.03202 1.02745 1.21107 0.95638 0.95923 0.83899 0.92474 1.21055 0.83560 0.97911 0.95011 1.42529 1.02439 1.70854 1.24081 1.20393 0.92684 1.32691 1.00878 0.91223 1.27214 0.95000 1.02372 1.04779 1.71006 1.37635 1.42822 1.10632 0.82614 0.74435 0.75587 0.72018 1.22099 1.20603 1.20025 1.45969 1.66118 1.14218 1.08943 1.20018 0.76027 0.86179 0.84481 1.90645 1.52465 1.17481 1.85820 1.22437 1.01709 1.06911 0.90920 0.85040 1.23099 1.02885 0.96573 0.94177 1.21590 0.92985 0.94436 1.00098 1.21874 1.02529 0.91118 0.99388 1.22776 0.81484 0.99406 0.98462 1.87842 1.25308 1.43973 1.74263 1.22616 1.01434 0.84298 0.92875 1.21819 0.93927 0.98622 1.01166 0.92709 0.90209 0.90755 0.94679 0.94356 0.80799 0.94856 0.75964 0.85655 0.88934 0.89150 0.88896 0.86839 0.93652 0.87567 0.93697 0.89231 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.48 71.98 0.68 -3.00 16 2 C 0.14 4.63 2.73 44.99 0.12 4.75 16 3 H 0.06 2.24 7.58 -2.38 -0.02 2.22 16 4 C 0.15 5.82 5.82 86.38 0.50 6.32 16 5 N -0.75 -37.41 5.43 -343.46 -1.87 -39.27 16 6 C -0.34 -18.56 9.99 84.03 0.84 -17.72 16 7 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 8 C -0.10 -5.88 5.50 84.86 0.47 -5.42 16 9 N -0.97 -60.72 13.70 21.65 0.30 -60.42 16 10 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 14 N -0.70 -22.19 4.40 -442.52 -1.95 -24.14 16 15 C 0.55 17.81 5.81 87.66 0.51 18.32 16 16 O -0.58 -23.08 16.23 -3.03 -0.05 -23.13 16 17 C -0.20 -5.11 5.87 -11.62 -0.07 -5.18 16 18 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 19 C -0.13 -2.80 9.52 30.55 0.29 -2.51 16 20 C -0.09 -1.82 2.03 -52.17 -0.11 -1.93 16 21 C -0.11 -1.79 5.92 30.79 0.18 -1.61 16 22 C 0.06 0.99 6.84 72.09 0.49 1.48 16 23 O -0.39 -8.52 10.69 -148.98 -1.59 -10.11 16 24 C 0.06 1.30 6.84 72.09 0.49 1.79 16 25 C -0.12 -2.39 5.58 30.79 0.17 -2.22 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.36 18.97 6.17 -92.71 -0.57 18.40 16 32 H 0.24 15.15 6.77 -92.71 -0.63 14.52 16 33 H 0.41 12.42 8.32 -92.71 -0.77 11.65 16 34 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.09 2.25 7.90 -2.39 -0.02 2.23 16 36 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 0.98 7.74 -2.39 -0.02 0.96 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.45 6.84 -2.39 -0.02 1.43 16 Total: -1.00 -70.51 348.57 1.28 -69.23 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -0.20 Total: 41.48 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.58 Total: -6.92 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -3.52 Total: -123.83 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.64 Total: -33.24 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -70.51 1.28 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497999652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.553 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds