Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 C 1.52998 * 109.46793 * 239.99416 * 2 1 3 5 5 N 1.46508 * 109.46861 * 184.99917 * 4 2 1 6 6 C 1.36930 * 119.99956 * 180.02562 * 5 4 2 7 7 H 1.08006 * 120.00323 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00221 * 180.27755 * 6 5 4 9 9 N 1.31622 * 119.99378 * 359.72256 * 8 6 5 10 10 Si 1.86793 * 120.00397 * 179.72355 * 8 6 5 11 11 H 1.48506 * 109.47354 * 59.99558 * 10 8 6 12 12 H 1.48493 * 109.47324 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47166 * 299.99765 * 10 8 6 14 14 N 1.46504 * 109.47074 * 119.99990 * 2 1 3 15 15 C 1.34781 * 119.99734 * 275.00000 * 14 2 1 16 16 O 1.21283 * 120.00083 * 359.97438 * 15 14 2 17 17 C 1.50701 * 119.99893 * 180.02562 * 15 14 2 18 18 H 1.09004 * 115.55333 * 310.32397 * 17 15 14 19 19 C 1.53057 * 117.50680 * 164.56350 * 17 15 14 20 20 C 1.52697 * 59.93300 * 252.53517 * 19 17 15 21 21 C 1.53246 * 117.88672 * 107.78053 * 20 19 17 22 22 C 1.53326 * 108.48845 * 196.26428 * 21 20 19 23 23 O 1.42871 * 109.31887 * 306.02101 * 22 21 20 24 24 C 1.42876 * 114.51702 * 64.36656 * 23 22 21 25 25 C 1.53253 * 117.88285 * 252.22088 * 20 19 17 26 26 H 1.08991 * 109.46856 * 60.00518 * 1 2 3 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46670 * 299.99982 * 1 2 3 29 29 H 1.09003 * 109.46825 * 65.00551 * 4 2 1 30 30 H 1.08995 * 109.47620 * 305.00298 * 4 2 1 31 31 H 0.96999 * 120.00019 * 0.02562 * 5 4 2 32 32 H 0.96998 * 119.99390 * 180.02562 * 9 8 6 33 33 H 0.96993 * 120.00265 * 94.99779 * 14 2 1 34 34 H 1.09002 * 117.50546 * 0.02562 * 19 17 15 35 35 H 1.09000 * 117.50460 * 145.06235 * 19 17 15 36 36 H 1.08998 * 109.63611 * 315.96830 * 21 20 19 37 37 H 1.09006 * 109.63148 * 76.56782 * 21 20 19 38 38 H 1.09000 * 109.50256 * 186.06363 * 22 21 20 39 39 H 1.09003 * 109.49335 * 65.97027 * 22 21 20 40 40 H 1.09008 * 109.49189 * 175.68133 * 24 23 22 41 41 H 1.08994 * 109.49862 * 55.58736 * 24 23 22 42 42 H 1.08995 * 109.63169 * 283.43188 * 25 20 19 43 43 H 1.09007 * 109.63410 * 43.82907 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1839 -1.4381 -2.2071 7 1 3.6468 -1.8434 -3.0519 8 6 5.5669 -1.5429 -2.1488 9 7 6.2213 -1.0494 -1.1189 10 14 6.4990 -2.3840 -3.5318 11 1 6.2470 -1.6659 -4.8070 12 1 7.9533 -2.3643 -3.2322 13 1 6.0377 -3.7901 -3.6561 14 7 2.0184 -0.6906 1.1962 15 6 2.1471 -0.0182 2.3572 16 8 1.8591 1.1587 2.4115 17 6 2.6500 -0.7284 3.5875 18 1 2.1552 -1.6711 3.8215 19 6 3.1174 0.1357 4.7612 20 6 4.1386 -0.6142 3.9090 21 6 5.0158 0.2043 2.9555 22 6 5.6494 -0.7508 1.9370 23 8 6.3293 -1.7984 2.6308 24 6 5.4784 -2.6483 3.4022 25 6 4.8324 -1.8324 4.5281 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7199 -1.2951 31 1 3.9825 -0.4628 -0.4316 32 1 7.1877 -1.1222 -1.0784 33 1 2.2491 -1.6317 1.1527 34 1 3.0607 1.2179 4.6435 35 1 2.9299 -0.2383 5.7677 36 1 4.4031 0.9406 2.4353 37 1 5.7992 0.7090 3.5209 38 1 6.3602 -0.2033 1.3180 39 1 4.8704 -1.1783 1.3057 40 1 6.0670 -3.4590 3.8319 41 1 4.7007 -3.0631 2.7610 42 1 5.6002 -1.5006 5.2270 43 1 4.0988 -2.4441 5.0533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497999654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = -57.258531 kcal Electronic energy + Delta-G solvation = -24036.397770 eV Core-core repulsion = 20696.247644 eV Total energy + Delta-G solvation = -3340.150126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35041 -38.53466 -36.56901 -35.59519 -33.62101 -31.35691 -30.82367 -30.03460 -29.66613 -25.72661 -24.51096 -23.34333 -22.54269 -22.39061 -20.65610 -20.05818 -18.67090 -17.25338 -16.75007 -15.90597 -15.82335 -15.50146 -14.89930 -14.53480 -14.41320 -14.16223 -13.66159 -13.48769 -13.16170 -13.06626 -12.76976 -12.45209 -12.27843 -12.17858 -12.00365 -11.76105 -11.60572 -11.01979 -10.92186 -10.83382 -10.80788 -10.49308 -10.40106 -10.12568 -9.99923 -9.80826 -9.63326 -9.46201 -8.92492 -8.82210 -8.65387 -6.96077 -5.77662 -3.06753 2.81462 3.41396 3.44145 3.48959 3.49980 3.87696 4.42120 4.57220 4.66034 4.81856 4.87989 5.02670 5.15973 5.30377 5.32477 5.49734 5.52052 5.54880 5.60036 5.64639 5.76866 5.86574 5.94270 5.96871 6.00300 6.06697 6.09253 6.11280 6.16906 6.22705 6.37759 6.38735 6.47339 6.67043 6.70354 6.95267 7.01869 7.68840 7.83684 7.88808 8.40870 8.57128 9.52637 10.05830 10.43002 11.43559 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013723 B = 0.007442 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.815520 B = 3761.683227 C = 5368.158557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.249 4.249 7 H 0.068 0.932 8 C -0.005 4.005 9 N -0.921 5.921 10 Si 0.906 3.094 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.288 1.288 14 N -0.707 5.707 15 C 0.547 3.453 16 O -0.549 6.549 17 C -0.185 4.185 18 H 0.121 0.879 19 C -0.142 4.142 20 C -0.094 4.094 21 C -0.126 4.126 22 C 0.078 3.922 23 O -0.379 6.379 24 C 0.063 3.937 25 C -0.116 4.116 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.385 0.615 32 H 0.257 0.743 33 H 0.403 0.597 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -1.582 11.199 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.377 5.377 6 C -0.380 4.380 7 H 0.086 0.914 8 C -0.202 4.202 9 N -0.569 5.569 10 Si 0.738 3.262 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.215 1.215 14 N -0.357 5.357 15 C 0.333 3.667 16 O -0.427 6.427 17 C -0.206 4.206 18 H 0.139 0.861 19 C -0.179 4.179 20 C -0.094 4.094 21 C -0.164 4.164 22 C 0.001 3.999 23 O -0.298 6.298 24 C -0.015 4.015 25 C -0.154 4.154 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.238 0.762 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.727 -0.844 11.042 12.957 hybrid contribution 0.345 -0.829 -0.548 1.052 sum -6.382 -1.673 10.494 12.395 Atomic orbital electron populations 1.22097 0.95572 1.01815 1.02098 1.21253 0.93350 0.97948 0.84679 0.89665 1.20985 0.87035 0.96930 0.93531 1.42366 0.99615 1.70430 1.25281 1.19114 0.89464 1.30093 0.99297 0.91427 1.24678 0.96306 1.01324 0.97926 1.69566 1.07396 1.50193 1.29741 0.86297 0.79059 0.79205 0.81663 1.21511 1.21700 1.21494 1.45959 1.66297 1.14388 1.09099 1.19524 0.76770 0.86607 0.83767 1.90657 1.50946 1.15957 1.85183 1.22399 0.99291 1.02359 0.96600 0.86118 1.23004 1.01307 0.99443 0.94136 1.21512 0.88378 0.98945 1.00584 1.22012 0.98726 0.98372 0.97288 1.22716 0.98608 0.87239 0.91316 1.87879 1.34310 1.43429 1.64141 1.22470 0.94428 0.92566 0.91990 1.21865 0.99841 0.95156 0.98513 0.91684 0.92614 0.92493 0.94914 0.95853 0.77967 0.93331 0.76248 0.87632 0.88308 0.90674 0.91041 0.87154 0.91206 0.89637 0.93361 0.90524 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.13 2.21 2.73 -67.92 -0.19 2.02 16 3 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 5 N -0.73 -17.33 5.43 -59.90 -0.33 -17.65 16 6 C -0.25 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 8 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 9 N -0.92 -25.42 11.93 55.49 0.66 -24.75 16 10 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.71 -11.31 4.52 -53.80 -0.24 -11.55 16 15 C 0.55 9.01 5.97 -10.98 -0.07 8.95 16 16 O -0.55 -10.70 15.80 5.55 0.09 -10.61 16 17 C -0.19 -2.52 5.89 -91.88 -0.54 -3.06 16 18 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 19 C -0.14 -1.78 9.51 -26.86 -0.26 -2.04 16 20 C -0.09 -1.29 2.03 -154.55 -0.31 -1.60 16 21 C -0.13 -2.09 5.58 -26.44 -0.15 -2.23 16 22 C 0.08 1.49 6.34 37.33 0.24 1.73 16 23 O -0.38 -7.10 10.69 -35.23 -0.38 -7.48 16 24 C 0.06 0.91 6.84 37.33 0.26 1.16 16 25 C -0.12 -1.40 5.92 -26.43 -0.16 -1.56 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.39 9.48 6.12 -40.82 -0.25 9.23 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 33 H 0.40 6.22 8.60 -40.82 -0.35 5.87 16 34 H 0.11 1.48 7.76 -51.93 -0.40 1.08 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.37 6.66 -51.93 -0.35 1.03 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.11 2.41 7.53 -51.93 -0.39 2.02 16 39 H 0.07 1.49 6.93 -51.93 -0.36 1.13 16 40 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -29.45 345.81 -8.21 -37.66 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -7.11 Total: 15.10 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.09 Total: -2.72 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.09 Total: -53.95 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.29 Total: -18.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.45 -8.21 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497999654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.602 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds