Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99856 * 2 1 4 4 C 1.52998 * 109.47226 * 124.99667 * 3 2 1 5 5 O 1.42902 * 109.47388 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00174 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47190 * 29.99434 * 6 5 4 8 8 C 1.53006 * 109.46869 * 270.00007 * 6 5 4 9 9 C 1.50696 * 109.47554 * 150.00006 * 6 5 4 10 10 O 1.21286 * 119.99782 * 4.99717 * 9 6 5 11 11 N 1.34772 * 120.00570 * 184.99938 * 9 6 5 12 12 C 1.46492 * 120.00366 * 179.97438 * 11 9 6 13 13 C 1.53008 * 109.47453 * 173.87615 * 12 11 9 14 14 N 1.46503 * 115.54357 * 324.34396 * 13 12 11 15 15 C 1.36940 * 120.00221 * 294.65647 * 14 13 12 16 16 H 1.08000 * 119.99525 * 354.23766 * 15 14 13 17 17 C 1.38803 * 120.00252 * 174.23144 * 15 14 13 18 18 N 1.31627 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00325 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47570 * 119.99870 * 19 17 15 22 22 H 1.48503 * 109.47144 * 240.00246 * 19 17 15 23 23 C 1.52994 * 117.49928 * 110.01197 * 13 12 11 24 24 C 1.52997 * 117.50122 * 178.67268 * 13 12 11 25 25 H 1.08005 * 120.00007 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00127 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00371 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.47017 * 4.99796 * 3 2 1 29 29 H 1.08996 * 109.47704 * 245.00126 * 3 2 1 30 30 H 1.08997 * 109.46867 * 60.00137 * 4 3 2 31 31 H 1.09002 * 109.47158 * 300.00086 * 4 3 2 32 32 H 1.08994 * 109.47153 * 59.99920 * 8 6 5 33 33 H 1.09001 * 109.46825 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.46651 * 299.99464 * 8 6 5 35 35 H 0.97003 * 119.99782 * 0.02562 * 11 9 6 36 36 H 1.08999 * 109.47208 * 53.87437 * 12 11 9 37 37 H 1.09001 * 109.47565 * 293.87169 * 12 11 9 38 38 H 0.97002 * 120.00038 * 114.93780 * 14 13 12 39 39 H 0.97001 * 119.99715 * 179.97438 * 18 17 15 40 40 H 1.09000 * 117.49673 * 215.00331 * 23 13 12 41 41 H 1.09001 * 117.49991 * 0.02562 * 23 13 12 42 42 H 1.09000 * 117.49898 * 359.97438 * 24 13 12 43 43 H 1.08996 * 117.49736 * 144.97028 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7490 2.5710 1.1820 6 6 4.6884 2.6998 2.2511 7 1 5.0654 1.7142 2.5243 8 6 4.0003 3.3359 3.4607 9 6 5.8354 3.5718 1.8097 10 8 5.8045 4.1107 0.7236 11 7 6.8957 3.7529 2.6217 12 6 8.0110 4.6001 2.1924 13 6 9.0029 4.7611 3.3462 14 7 8.4097 4.8331 4.6838 15 6 7.6108 5.8926 5.0224 16 1 7.4928 6.7200 4.3385 17 6 6.9527 5.9029 6.2445 18 7 7.0962 4.8941 7.0777 19 14 5.8624 7.3477 6.7061 20 1 5.8686 8.3441 5.6050 21 1 4.4753 6.8686 6.9329 22 1 6.3771 7.9795 7.9476 23 6 10.3610 4.0695 3.2119 24 6 10.2611 5.5917 3.0856 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6212 1.4028 -0.9313 30 1 3.7398 0.5067 1.0921 31 1 2.4771 1.2357 2.1130 32 1 3.1707 2.7052 3.7800 33 1 4.7170 3.4345 4.2760 34 1 3.6234 4.3215 3.1875 35 1 6.9207 3.3215 3.4902 36 1 7.6318 5.5793 1.8999 37 1 8.5135 4.1366 1.3434 38 1 8.5862 4.1325 5.3310 39 1 6.6366 4.9015 7.9319 40 1 10.8133 3.6682 4.1189 41 1 10.5481 3.5002 2.3015 42 1 10.3824 6.0232 2.0920 43 1 10.6472 6.1921 3.9092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499176308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -31.793065 kcal Electronic energy + Delta-G solvation = -22364.398313 eV Core-core repulsion = 19025.352453 eV Total energy + Delta-G solvation = -3339.045860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59320 -38.01604 -37.19580 -35.18482 -33.61449 -33.13873 -31.41648 -29.72864 -29.05317 -26.57106 -24.03814 -23.85212 -22.79067 -21.86459 -20.19073 -19.69266 -19.11344 -17.20118 -16.94263 -16.84383 -15.93500 -15.48866 -15.30750 -14.83505 -14.46838 -14.29613 -13.80446 -13.59217 -13.36041 -13.19228 -13.11277 -12.60699 -12.24444 -12.13528 -11.99972 -11.90443 -11.32225 -11.19520 -11.05122 -11.02394 -10.96668 -10.92966 -10.34822 -10.23299 -9.82685 -9.80873 -9.57555 -9.35458 -9.14505 -8.89488 -8.38954 -7.15232 -5.90602 -3.21771 1.99165 3.05810 3.23162 3.36179 3.44402 3.46090 4.09263 4.40585 4.53156 4.74667 4.88096 4.94979 5.06982 5.17337 5.21156 5.21858 5.28591 5.31106 5.31808 5.46253 5.55073 5.62488 5.77409 5.81002 5.89619 5.92902 5.99274 6.11025 6.21578 6.36931 6.38873 6.43100 6.45006 6.50560 6.59570 6.75502 7.01095 7.19455 7.67132 8.11976 8.27420 8.74372 9.39369 9.90409 10.26852 11.30720 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.004206 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.005325 B = 6655.240504 C = 7884.286145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.359 6.359 6 C 0.076 3.924 7 H 0.081 0.919 8 C -0.171 4.171 9 C 0.512 3.488 10 O -0.541 6.541 11 N -0.696 5.696 12 C 0.154 3.846 13 C 0.128 3.872 14 N -0.689 5.689 15 C -0.232 4.232 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.186 4.186 24 C -0.192 4.192 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -9.848 -9.497 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.277 6.277 6 C 0.014 3.986 7 H 0.099 0.901 8 C -0.228 4.228 9 C 0.296 3.704 10 O -0.418 6.418 11 N -0.349 5.349 12 C 0.028 3.972 13 C 0.034 3.966 14 N -0.329 5.329 15 C -0.363 4.363 16 H 0.089 0.911 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.219 1.219 23 C -0.224 4.224 24 C -0.232 4.232 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.427 -9.165 -10.361 14.860 hybrid contribution -0.467 0.190 1.293 1.388 sum -5.894 -8.975 -9.068 14.054 Atomic orbital electron populations 1.23892 0.95895 1.01981 1.01004 1.22829 0.96012 0.98087 1.00004 1.20644 0.97956 0.95725 0.98721 1.22495 0.94099 0.86430 0.98274 1.88011 1.53899 1.36810 1.49019 1.21872 0.89435 0.98977 0.88278 0.90086 1.22233 1.01760 1.02004 0.96834 1.20221 0.82959 0.82249 0.84937 1.90662 1.79664 1.49388 1.22086 1.45674 1.18558 1.49865 1.20797 1.21052 0.86734 0.94517 0.94940 1.20223 0.85836 1.02385 0.88140 1.41807 1.56863 1.26913 1.07283 1.19184 1.19278 0.97305 1.00530 0.91078 1.24717 1.00470 0.97987 0.97201 1.69664 1.47111 1.31099 1.10001 0.86173 0.80307 0.82012 0.78098 1.20449 1.21734 1.21857 1.23191 1.01194 0.95655 1.02324 1.23365 1.04875 0.93080 1.01899 0.88398 0.88414 0.87217 0.90546 0.89950 0.93256 0.93088 0.91863 0.89520 0.91237 0.75421 0.91528 0.92489 0.77711 0.93454 0.89091 0.89392 0.89880 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.09 -0.97 6.03 -27.88 -0.17 -1.14 16 4 C 0.06 0.75 5.73 37.16 0.21 0.96 16 5 O -0.36 -5.71 9.53 -55.09 -0.52 -6.24 16 6 C 0.08 1.17 3.13 -27.88 -0.09 1.08 16 7 H 0.08 1.04 7.79 -51.92 -0.40 0.63 16 8 C -0.17 -2.61 9.48 37.16 0.35 -2.26 16 9 C 0.51 9.60 7.18 -10.99 -0.08 9.52 16 10 O -0.54 -12.01 16.49 -14.31 -0.24 -12.24 16 11 N -0.70 -12.63 5.35 -60.30 -0.32 -12.95 16 12 C 0.15 2.82 5.71 -4.04 -0.02 2.80 16 13 C 0.13 2.38 2.45 -131.82 -0.32 2.05 16 14 N -0.69 -15.44 4.49 -47.23 -0.21 -15.65 16 15 C -0.23 -5.92 9.82 -15.06 -0.15 -6.07 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -25.71 13.07 55.49 0.73 -24.99 16 19 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C -0.19 -2.91 10.11 -26.70 -0.27 -3.18 16 24 C -0.19 -3.24 10.18 -26.70 -0.27 -3.51 16 25 H 0.10 0.64 8.06 -52.48 -0.42 0.21 16 26 H 0.10 0.75 7.84 -52.48 -0.41 0.34 16 27 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.09 1.44 7.92 -51.93 -0.41 1.03 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 7.36 7.58 -40.82 -0.31 7.05 16 36 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 37 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 38 H 0.39 9.21 8.04 -40.82 -0.33 8.88 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.19 8.06 -51.93 -0.42 0.78 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -29.83 366.79 -8.16 -37.99 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -7.26 Total: 14.77 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.83 Total: -2.78 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.19 Total: -53.59 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.76 Total: -18.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.83 -8.16 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499176308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.199 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds