Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00197 * 2 1 4 4 C 1.53007 * 109.46910 * 124.99659 * 3 2 1 5 5 O 1.42902 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00117 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47160 * 330.00669 * 6 5 4 8 8 C 1.53003 * 109.46793 * 90.00447 * 6 5 4 9 9 C 1.50696 * 109.47207 * 210.00550 * 6 5 4 10 10 O 1.21280 * 120.00345 * 355.00117 * 9 6 5 11 11 N 1.34776 * 119.99642 * 175.00123 * 9 6 5 12 12 C 1.46499 * 119.99813 * 179.97438 * 11 9 6 13 13 C 1.53003 * 109.47255 * 174.94756 * 12 11 9 14 14 N 1.46499 * 115.55055 * 80.39082 * 13 12 11 15 15 C 1.36931 * 120.00114 * 65.27431 * 14 13 12 16 16 H 1.07998 * 120.00050 * 355.17817 * 15 14 13 17 17 C 1.38816 * 120.00251 * 175.17311 * 15 14 13 18 18 N 1.31615 * 120.00049 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99682 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46850 * 269.99205 * 19 17 15 21 21 H 1.48491 * 109.47489 * 29.99453 * 19 17 15 22 22 H 1.48502 * 109.47125 * 149.99757 * 19 17 15 23 23 C 1.52997 * 117.50130 * 226.06160 * 13 12 11 24 24 C 1.53002 * 117.49723 * 294.72143 * 13 12 11 25 25 H 1.07995 * 120.00107 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99727 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99606 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47376 * 4.99984 * 3 2 1 29 29 H 1.08997 * 109.47325 * 244.99612 * 3 2 1 30 30 H 1.09005 * 109.46648 * 60.00409 * 4 3 2 31 31 H 1.08993 * 109.47552 * 300.00147 * 4 3 2 32 32 H 1.08999 * 109.47086 * 60.00178 * 8 6 5 33 33 H 1.08996 * 109.46724 * 180.02562 * 8 6 5 34 34 H 1.09003 * 109.46926 * 300.00013 * 8 6 5 35 35 H 0.96999 * 120.00099 * 359.97438 * 11 9 6 36 36 H 1.08998 * 109.47727 * 54.94984 * 12 11 9 37 37 H 1.08997 * 109.47569 * 294.94589 * 12 11 9 38 38 H 0.97001 * 120.00098 * 245.27738 * 14 13 12 39 39 H 0.97002 * 119.99905 * 179.97438 * 18 17 15 40 40 H 1.09000 * 117.50034 * 215.00089 * 23 13 12 41 41 H 1.09008 * 117.49740 * 0.02562 * 23 13 12 42 42 H 1.08997 * 117.50134 * 359.97438 * 24 13 12 43 43 H 1.08999 * 117.49829 * 144.97366 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 8 3.7500 2.5702 1.1814 6 6 4.6887 2.6995 2.2511 7 1 4.3357 2.1353 3.1144 8 6 6.0471 2.1540 1.8062 9 6 4.8285 4.1529 2.6239 10 8 4.2581 5.0032 1.9740 11 7 5.5876 4.5077 3.6796 12 6 5.7240 5.9206 4.0417 13 6 6.5274 6.0396 5.3383 14 7 7.9816 5.9393 5.1921 15 6 8.6680 6.9005 4.4992 16 1 8.1306 7.6898 3.9946 17 6 10.0545 6.8604 4.4452 18 7 10.7141 7.7840 3.7787 19 14 10.9840 5.4948 5.3174 20 1 11.2981 5.9183 6.7057 21 1 10.1464 4.2692 5.3513 22 1 12.2465 5.2116 4.5887 23 6 5.9893 6.9792 6.4192 24 6 5.9039 5.4630 6.6111 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9313 30 1 3.7399 0.5064 1.0921 31 1 2.4773 1.2355 2.1131 32 1 6.4001 2.7182 0.9429 33 1 6.7630 2.2521 2.6222 34 1 5.9459 1.1027 1.5365 35 1 6.0435 3.8275 4.1996 36 1 4.7352 6.3560 4.1858 37 1 6.2421 6.4520 3.2433 38 1 8.4584 5.1921 5.5861 39 1 11.6830 7.7562 3.7413 40 1 6.7172 7.5228 7.0215 41 1 5.0625 7.5124 6.2067 42 1 4.9213 4.9993 6.5247 43 1 6.5757 5.0087 7.3394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499176310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = -27.494802 kcal Electronic energy + Delta-G solvation = -22000.944563 eV Core-core repulsion = 18662.085089 eV Total energy + Delta-G solvation = -3338.859474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84014 -38.22004 -37.37682 -35.31749 -33.89322 -33.05663 -31.64991 -30.38602 -29.22528 -26.80524 -24.21104 -23.60576 -23.01024 -21.98152 -20.34241 -19.92368 -19.18346 -17.69921 -17.14719 -17.03716 -16.20772 -15.63907 -15.37622 -15.04677 -14.53837 -14.35596 -14.17134 -13.77473 -13.71447 -13.26611 -12.89197 -12.77126 -12.52607 -12.36314 -12.12665 -11.92547 -11.71818 -11.43382 -11.26892 -11.18221 -11.08737 -11.01095 -10.49861 -10.22495 -9.98645 -9.71742 -9.66300 -9.56369 -9.32807 -8.90078 -8.67410 -7.39941 -5.83730 -3.22348 1.88964 2.83071 2.97623 3.28047 3.32313 3.38821 3.82800 4.34614 4.50430 4.62141 4.69212 4.77058 4.86726 4.89064 4.94834 5.00826 5.07588 5.13647 5.15735 5.36468 5.47311 5.49916 5.52245 5.59750 5.65701 5.70649 5.78373 5.95139 6.04614 6.14850 6.27261 6.29137 6.36433 6.40416 6.59063 6.65852 6.74731 6.97791 7.79298 7.92438 8.34635 8.48567 9.11187 9.82456 10.00319 11.33958 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.003312 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.902519 B = 8452.763361 C = 8960.528618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.074 3.926 7 H 0.083 0.917 8 C -0.171 4.171 9 C 0.510 3.490 10 O -0.526 6.526 11 N -0.712 5.712 12 C 0.149 3.851 13 C 0.132 3.868 14 N -0.715 5.715 15 C -0.244 4.244 16 H 0.093 0.907 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.291 1.291 23 C -0.180 4.180 24 C -0.189 4.189 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.365 0.635 39 H 0.261 0.739 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 -16.811 -0.702 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.012 3.988 7 H 0.100 0.900 8 C -0.229 4.229 9 C 0.294 3.706 10 O -0.402 6.402 11 N -0.364 5.364 12 C 0.024 3.976 13 C 0.039 3.961 14 N -0.356 5.356 15 C -0.373 4.373 16 H 0.111 0.889 17 C -0.188 4.188 18 N -0.575 5.575 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.205 1.205 22 H -0.217 1.217 23 C -0.220 4.220 24 C -0.227 4.227 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.199 0.801 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.335 -15.817 -1.474 22.786 hybrid contribution 1.185 -1.514 1.061 2.196 sum -15.151 -17.331 -0.413 23.024 Atomic orbital electron populations 1.23913 0.95915 1.02058 1.00697 1.22815 0.96023 0.98007 1.00283 1.20643 0.98008 0.95859 0.98578 1.22519 0.93819 0.86506 0.98424 1.88043 1.54305 1.37134 1.48020 1.21885 0.91288 0.94408 0.91208 0.89959 1.22236 0.95406 1.01638 1.03595 1.20264 0.79486 0.90207 0.80626 1.90708 1.46335 1.51915 1.51218 1.45845 1.49868 1.09772 1.30871 1.21251 0.98551 0.80619 0.97220 1.20061 0.85245 1.03164 0.87630 1.42144 0.99833 1.28037 1.65594 1.18984 0.89306 1.04326 1.24698 0.88925 1.24679 0.96097 0.97941 1.00061 1.69694 1.07150 1.34952 1.45718 0.86563 0.79870 0.82362 0.79683 1.21090 1.20502 1.21696 1.23357 1.02458 0.91865 1.04322 1.23134 1.01562 0.97546 1.00432 0.88352 0.88356 0.87215 0.90416 0.89923 0.93098 0.93193 0.90809 0.90633 0.91511 0.76800 0.91791 0.90077 0.80096 0.92922 0.88353 0.89507 0.89181 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 14.32 29.01 0.42 -0.88 16 2 C -0.15 -1.12 9.52 -36.03 -0.34 -1.47 16 3 C -0.09 -0.84 6.03 -27.88 -0.17 -1.01 16 4 C 0.06 0.62 5.73 37.16 0.21 0.84 16 5 O -0.36 -4.90 9.53 -55.09 -0.52 -5.42 16 6 C 0.07 0.92 3.13 -27.88 -0.09 0.83 16 7 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 8 C -0.17 -1.89 9.48 37.16 0.35 -1.54 16 9 C 0.51 8.34 7.18 -10.99 -0.08 8.26 16 10 O -0.53 -10.96 16.50 -14.30 -0.24 -11.20 16 11 N -0.71 -10.91 5.48 -60.30 -0.33 -11.24 16 12 C 0.15 2.65 5.73 -4.04 -0.02 2.63 16 13 C 0.13 2.38 2.15 -131.82 -0.28 2.09 16 14 N -0.71 -15.76 5.29 -47.23 -0.25 -16.01 16 15 C -0.24 -6.58 10.04 -15.06 -0.15 -6.73 16 16 H 0.09 2.74 8.00 -52.49 -0.42 2.32 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 19 Si 0.88 21.24 27.78 -169.99 -4.72 16.52 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.15 6.45 56.52 0.36 -5.78 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 C -0.18 -2.94 10.11 -26.70 -0.27 -3.21 16 24 C -0.19 -2.71 10.14 -26.69 -0.27 -2.98 16 25 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 26 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 27 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 28 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.40 5.20 8.26 -40.82 -0.34 4.86 16 36 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.08 1.74 7.73 -51.93 -0.40 1.33 16 38 H 0.36 7.84 5.87 -40.82 -0.24 7.60 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 41 H 0.09 1.27 8.08 -51.92 -0.42 0.85 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -33.25 364.46 -7.82 -41.07 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.23 Total: 11.61 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.79 Total: -3.02 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.20 Total: -55.06 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.76 Total: -16.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -7.82 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499176310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.577 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds