Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42905 * 109.47234 * 2 1 4 4 C 1.42899 * 113.99973 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47044 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99779 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00049 * 180.02562 * 5 4 3 8 8 C 1.46952 * 120.44253 * 359.97438 * 7 5 4 9 9 C 1.53585 * 108.54440 * 125.78229 * 8 7 5 10 10 H 1.09009 * 110.59786 * 172.73822 * 9 8 7 11 11 C 1.53365 * 108.69236 * 294.32520 * 9 8 7 12 12 C 1.53013 * 109.24900 * 60.26303 * 11 9 8 13 13 C 1.53014 * 109.79617 * 60.59018 * 12 11 9 14 14 C 1.53372 * 109.26466 * 299.42408 * 13 12 11 15 15 H 1.08995 * 110.59658 * 178.10818 * 14 13 12 16 16 C 1.46940 * 120.44242 * 179.97438 * 7 5 4 17 17 N 1.47575 * 107.77187 * 51.11514 * 9 8 7 18 18 C 1.36935 * 121.61164 * 120.51895 * 17 9 8 19 19 H 1.07993 * 120.00203 * 332.31324 * 18 17 9 20 20 C 1.38813 * 119.99323 * 152.31463 * 18 17 9 21 21 N 1.31617 * 120.00439 * 341.73189 * 20 18 17 22 22 Si 1.86800 * 119.99788 * 161.73794 * 20 18 17 23 23 H 1.48498 * 109.47374 * 94.97137 * 22 20 18 24 24 H 1.48492 * 109.47350 * 214.97483 * 22 20 18 25 25 H 1.48503 * 109.47011 * 334.97730 * 22 20 18 26 26 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46965 * 299.99574 * 1 2 3 28 28 H 1.09000 * 109.47644 * 59.99411 * 1 2 3 29 29 H 1.09005 * 109.47468 * 240.00316 * 2 1 3 30 30 H 1.09000 * 109.47644 * 120.00589 * 2 1 3 31 31 H 1.08995 * 109.47382 * 59.99944 * 4 3 2 32 32 H 1.09007 * 109.47060 * 300.00307 * 4 3 2 33 33 H 1.08994 * 109.62113 * 245.50336 * 8 7 5 34 34 H 1.09001 * 109.62308 * 6.06687 * 8 7 5 35 35 H 1.08997 * 109.51214 * 180.19985 * 11 9 8 36 36 H 1.09003 * 109.50430 * 300.29440 * 11 9 8 37 37 H 1.09007 * 109.41417 * 180.68014 * 12 11 9 38 38 H 1.08993 * 109.42290 * 300.55012 * 12 11 9 39 39 H 1.08990 * 109.50794 * 179.49149 * 13 12 11 40 40 H 1.08991 * 109.50627 * 59.36321 * 13 12 11 41 41 H 1.09001 * 109.62710 * 114.52026 * 16 7 5 42 42 H 1.09003 * 109.79114 * 354.03691 * 16 7 5 43 43 H 0.96999 * 119.99932 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9610 3.7728 0.0005 7 7 5.1209 3.2663 -0.0008 8 6 6.1690 2.2363 -0.0019 9 6 7.1133 2.5015 -1.1838 10 1 7.9752 1.8354 -1.1430 11 6 6.3354 2.2977 -2.4897 12 6 5.1613 3.2780 -2.5358 13 6 5.6841 4.7152 -2.4883 14 6 6.4599 4.9286 -1.1826 15 1 6.8710 5.9372 -1.1413 16 6 5.5108 4.6831 -0.0007 17 7 7.5310 3.9154 -1.1182 18 6 8.8486 4.2700 -1.0034 19 1 9.5484 3.6004 -0.5257 20 6 9.2848 5.4902 -1.5012 21 7 8.5540 6.1411 -2.3813 22 14 10.9090 6.2084 -0.9220 23 1 11.9836 5.8359 -1.8769 24 1 10.7995 7.6876 -0.8526 25 1 11.2353 5.6724 0.4239 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8332 0.9767 -0.8907 32 1 3.8340 0.9763 0.8892 33 1 6.7292 2.2831 0.9319 34 1 5.7145 1.2516 -0.1103 35 1 6.9948 2.4794 -3.3384 36 1 5.9589 1.2757 -2.5334 37 1 4.5994 3.1272 -3.4575 38 1 4.5088 3.1023 -1.6807 39 1 4.8449 5.4094 -2.5304 40 1 6.3450 4.8904 -3.3371 41 1 6.0194 4.9228 0.9330 42 1 4.6250 5.3096 -0.1064 43 1 8.8590 6.9936 -2.7294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499543948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -29.868974 kcal Electronic energy + Delta-G solvation = -24275.086665 eV Core-core repulsion = 20936.124240 eV Total energy + Delta-G solvation = -3338.962426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64933 -38.27979 -37.13456 -34.02244 -32.72590 -32.05993 -31.49604 -30.47257 -28.07516 -26.37468 -25.33038 -23.57538 -22.90838 -21.54757 -21.21214 -19.53650 -18.32287 -17.33350 -16.72068 -16.35457 -16.06062 -15.22802 -14.82215 -14.69050 -14.12459 -13.87007 -13.65144 -13.50221 -12.92017 -12.76693 -12.68152 -12.60215 -12.43155 -12.08282 -11.81146 -11.51975 -11.41030 -11.30982 -11.18267 -10.93290 -10.71316 -10.34256 -10.19214 -10.03287 -9.96360 -9.74943 -9.58469 -9.45484 -9.18817 -8.53795 -7.88325 -6.64796 -5.85197 -3.28826 2.91647 3.00900 3.33369 3.41939 3.43157 3.96882 4.41811 4.75113 4.88159 5.00166 5.10727 5.16941 5.20397 5.23490 5.29652 5.49076 5.61020 5.64104 5.70070 5.75484 5.83313 5.89362 5.96678 6.01675 6.14506 6.29001 6.43941 6.44566 6.50654 6.58879 6.70703 6.86490 6.91910 7.03429 7.07519 7.14597 7.49923 7.60354 7.72476 7.87080 8.33543 8.54742 9.10095 9.72489 10.34065 11.21449 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036962 B = 0.004633 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.353552 B = 6041.536114 C = 6098.321967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.044 3.956 5 C 0.515 3.485 6 O -0.533 6.533 7 N -0.590 5.590 8 C 0.093 3.907 9 C 0.151 3.849 10 H 0.079 0.921 11 C -0.124 4.124 12 C -0.140 4.140 13 C -0.113 4.113 14 C 0.178 3.822 15 H 0.116 0.884 16 C 0.094 3.906 17 N -0.578 5.578 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.894 5.894 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.279 1.279 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -11.771 3.921 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.303 3.697 6 O -0.410 6.410 7 N -0.324 5.324 8 C -0.032 4.032 9 C 0.043 3.957 10 H 0.097 0.903 11 C -0.163 4.163 12 C -0.178 4.178 13 C -0.152 4.152 14 C 0.071 3.929 15 H 0.134 0.866 16 C -0.029 4.029 17 N -0.299 5.299 18 C -0.382 4.382 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.128 -10.973 3.859 14.786 hybrid contribution 1.165 0.049 0.049 1.167 sum -7.963 -10.924 3.909 14.072 Atomic orbital electron populations 1.21720 0.93565 1.02024 1.03430 1.22523 0.95856 0.83749 1.00072 1.88021 1.18907 1.25960 1.95392 1.22327 0.83366 0.95654 1.02230 1.19830 0.82700 0.90205 0.77011 1.90694 1.48966 1.51632 1.49696 1.48117 1.04335 1.08596 1.71391 1.22436 0.90142 0.89400 1.01193 1.21197 0.94377 0.89120 0.91010 0.90293 1.21989 0.97821 0.96667 0.99862 1.22118 0.97811 0.96975 1.00851 1.21780 0.98251 0.94037 1.01094 1.21139 0.86081 0.96351 0.89295 0.86624 1.22513 0.99553 0.79739 1.01100 1.44397 1.02511 0.98293 1.84662 1.19120 0.84860 1.02883 1.31351 0.91500 1.25020 0.97783 0.99931 0.96641 1.69986 1.38758 1.16295 1.28777 0.86304 0.83554 0.78450 0.78562 1.21573 1.21572 1.20466 0.91138 0.91770 0.91690 0.93262 0.93367 0.90347 0.90672 0.91350 0.91319 0.92099 0.94299 0.95028 0.90557 0.94410 0.90902 0.92111 0.90101 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.97 16 2 C 0.05 0.57 6.66 37.15 0.25 0.81 16 3 O -0.36 -5.45 9.88 -55.14 -0.54 -6.00 16 4 C 0.04 0.61 4.73 36.01 0.17 0.78 16 5 C 0.51 9.25 5.10 -10.98 -0.06 9.20 16 6 O -0.53 -11.64 15.90 -14.35 -0.23 -11.86 16 7 N -0.59 -10.50 1.65 -172.27 -0.28 -10.78 16 8 C 0.09 1.46 5.80 -3.49 -0.02 1.44 16 9 C 0.15 2.82 3.61 -66.85 -0.24 2.58 16 10 H 0.08 1.42 8.03 -51.92 -0.42 1.00 16 11 C -0.12 -2.25 5.59 -26.54 -0.15 -2.40 16 12 C -0.14 -2.71 5.55 -26.72 -0.15 -2.86 16 13 C -0.11 -2.47 5.56 -26.53 -0.15 -2.62 16 14 C 0.18 4.02 2.65 -66.86 -0.18 3.84 16 15 H 0.12 2.96 5.90 -51.93 -0.31 2.66 16 16 C 0.09 1.88 5.88 -3.51 -0.02 1.86 16 17 N -0.58 -13.21 2.53 -155.45 -0.39 -13.60 16 18 C -0.25 -6.42 9.72 -15.06 -0.15 -6.57 16 19 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 20 C 0.01 0.14 4.99 -17.43 -0.09 0.05 16 21 N -0.89 -24.36 10.98 55.49 0.61 -23.75 16 22 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 32 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.84 5.90 -51.93 -0.31 0.53 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.46 2.48 -52.49 -0.13 1.33 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.80 7.98 -51.93 -0.41 1.38 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.66 7.00 -51.93 -0.36 1.30 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -30.28 326.62 -8.29 -38.57 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.95 Total: 1.66 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.39 Total: 5.15 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.07 Total: -48.14 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.77 Total: -17.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.28 -8.29 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499543948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.698 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds