Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00070 * 2 1 4 4 N 1.34776 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.48152 * 127.83547 * 0.03192 * 4 2 1 6 6 C 1.54389 * 104.61636 * 140.39186 * 5 4 2 7 7 C 1.54285 * 104.96352 * 23.86091 * 6 5 4 8 8 C 1.53001 * 110.34700 * 241.03027 * 7 6 5 9 9 C 1.50698 * 110.34397 * 118.87057 * 7 6 5 10 10 O 1.21279 * 119.99976 * 358.92408 * 9 7 6 11 11 N 1.34774 * 120.00243 * 178.91937 * 9 7 6 12 12 C 1.46505 * 119.99875 * 5.19453 * 11 9 7 13 13 C 1.46496 * 120.00086 * 185.19660 * 11 9 7 14 14 H 1.08997 * 109.47442 * 359.97438 * 13 11 9 15 15 C 1.52999 * 109.47427 * 120.00448 * 13 11 9 16 16 C 1.50701 * 109.46903 * 239.99966 * 13 11 9 17 17 H 1.07994 * 120.00157 * 335.16762 * 16 13 11 18 18 C 1.37880 * 119.99711 * 155.16787 * 16 13 11 19 19 N 1.31512 * 120.00355 * 355.15928 * 18 16 13 20 20 Si 1.86809 * 119.99734 * 175.15747 * 18 16 13 21 21 H 1.48494 * 109.47149 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46775 * 239.99923 * 20 18 16 23 23 H 1.48500 * 109.46840 * 120.00299 * 20 18 16 24 24 C 1.48141 * 127.83804 * 179.97438 * 4 2 1 25 25 H 1.09003 * 109.47712 * 240.00602 * 1 2 3 26 26 H 1.09005 * 109.47549 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47176 * 120.00511 * 1 2 3 28 28 H 1.08997 * 110.41029 * 21.60527 * 5 4 2 29 29 H 1.09001 * 110.50286 * 259.22025 * 5 4 2 30 30 H 1.09007 * 110.34156 * 264.99087 * 6 5 4 31 31 H 1.08998 * 110.34289 * 142.73540 * 6 5 4 32 32 H 1.09002 * 109.46392 * 298.52552 * 8 7 6 33 33 H 1.09000 * 109.47074 * 58.51943 * 8 7 6 34 34 H 1.08995 * 109.47572 * 178.52553 * 8 7 6 35 35 H 1.08993 * 109.47022 * 274.87801 * 12 11 9 36 36 H 1.09004 * 109.46697 * 34.87956 * 12 11 9 37 37 H 1.09000 * 109.46930 * 154.87702 * 12 11 9 38 38 H 1.09007 * 109.46908 * 295.10629 * 15 13 11 39 39 H 1.08997 * 109.47294 * 55.10498 * 15 13 11 40 40 H 1.09004 * 109.47302 * 175.11321 * 15 13 11 41 41 H 0.97004 * 119.99709 * 5.16861 * 19 18 16 42 42 H 1.08997 * 110.40533 * 100.82857 * 24 4 2 43 43 H 1.08994 * 110.40958 * 338.39623 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6219 -2.5392 0.0005 6 6 2.5413 -3.3344 -0.9514 7 6 3.8774 -2.5630 -0.9514 8 6 4.2051 -2.0667 -2.3611 9 6 4.9886 -3.4399 -0.4341 10 8 4.7492 -4.5729 -0.0740 11 7 6.2483 -2.9649 -0.3718 12 6 6.5195 -1.5627 -0.6984 13 6 7.3464 -3.8508 0.0225 14 1 6.9544 -4.8473 0.2255 15 6 8.3723 -3.9268 -1.1101 16 6 8.0078 -3.3092 1.2636 17 1 7.9494 -2.2550 1.4904 18 6 8.6875 -4.1598 2.1096 19 7 8.6787 -5.4556 1.8856 20 14 9.6209 -3.4713 3.5740 21 1 9.4757 -1.9938 3.6034 22 1 11.0583 -3.8247 3.4553 23 1 9.0711 -4.0483 4.8270 24 6 3.6484 -1.3693 0.0001 25 1 -0.3635 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 0.5991 -2.5330 -0.3762 29 1 1.6542 -2.9647 1.0035 30 1 2.1175 -3.3583 -1.9554 31 1 2.6886 -4.3476 -0.5773 32 1 4.3122 -2.9200 -3.0308 33 1 3.3993 -1.4246 -2.7167 34 1 5.1372 -1.5021 -2.3400 35 1 6.6470 -1.4588 -1.7759 36 1 5.6836 -0.9450 -0.3701 37 1 7.4297 -1.2413 -0.1922 38 1 7.9175 -4.3987 -1.9812 39 1 8.7000 -2.9207 -1.3716 40 1 9.2301 -4.5153 -0.7846 41 1 8.2580 -5.8066 1.0851 42 1 3.9991 -1.6105 1.0035 43 1 4.1543 -0.4805 -0.3768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518825644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = -61.513802 kcal Electronic energy + Delta-G solvation = -23746.503349 eV Core-core repulsion = 20406.168701 eV Total energy + Delta-G solvation = -3340.334648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71545 -39.13176 -37.13391 -35.56623 -33.64195 -32.48561 -30.14678 -29.97183 -28.89412 -26.55769 -26.31687 -24.84769 -23.63051 -22.57254 -20.22675 -19.60365 -18.30007 -17.04410 -16.83859 -16.80618 -15.65883 -15.53648 -15.07986 -14.62770 -14.17585 -13.92210 -13.76471 -13.51098 -13.36395 -12.96467 -12.74078 -12.62650 -12.57280 -12.27095 -12.24065 -11.81942 -11.62570 -11.52247 -11.28837 -11.21556 -11.06129 -10.79852 -10.75845 -10.59163 -10.17758 -10.14939 -9.99724 -9.00310 -8.92510 -8.81013 -8.40822 -7.60773 -6.42800 -4.17259 2.51727 2.80529 3.23922 3.40428 3.43415 3.56331 3.78648 4.30563 4.47522 4.50680 4.71211 4.79507 5.00223 5.02900 5.14271 5.19034 5.22954 5.33313 5.39835 5.46390 5.53672 5.66045 5.73392 5.78698 5.83727 5.87758 5.90823 6.11092 6.12195 6.24389 6.32353 6.41517 6.47953 6.67901 7.03276 7.20538 7.45463 7.53827 7.92441 8.03624 8.26761 8.43309 8.74615 8.91987 9.55391 10.94598 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.004849 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.145600 B = 5772.712844 C = 6151.452988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.530 3.470 3 O -0.550 6.550 4 N -0.623 5.623 5 C 0.101 3.899 6 C -0.123 4.123 7 C -0.094 4.094 8 C -0.146 4.146 9 C 0.517 3.483 10 O -0.546 6.546 11 N -0.583 5.583 12 C 0.069 3.931 13 C 0.238 3.762 14 H 0.066 0.934 15 C -0.144 4.144 16 C -0.606 4.606 17 H 0.055 0.945 18 C 0.026 3.974 19 N -0.904 5.904 20 Si 1.074 2.926 21 H -0.289 1.289 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.116 3.884 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.273 0.727 42 H 0.079 0.921 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 7.662 -7.300 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.320 3.680 3 O -0.428 6.428 4 N -0.357 5.357 5 C -0.022 4.022 6 C -0.161 4.161 7 C -0.098 4.098 8 C -0.203 4.203 9 C 0.302 3.698 10 O -0.425 6.425 11 N -0.313 5.313 12 C -0.074 4.074 13 C 0.138 3.862 14 H 0.084 0.916 15 C -0.203 4.203 16 C -0.644 4.644 17 H 0.073 0.927 18 C -0.180 4.180 19 N -0.540 5.540 20 Si 0.903 3.097 21 H -0.215 1.215 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.006 4.006 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.004 7.297 -5.771 15.989 hybrid contribution -0.807 0.448 -1.375 1.656 sum -13.811 7.745 -7.146 17.372 Atomic orbital electron populations 1.21883 0.91424 1.05287 1.04184 1.20438 0.90248 0.81759 0.75563 1.90729 1.70849 1.30557 1.50618 1.49117 1.07728 1.05924 1.72975 1.22488 0.97914 0.81131 1.00644 1.22629 0.92397 1.01056 1.00052 1.21664 0.95432 0.95633 0.97122 1.22080 1.02914 1.01638 0.93642 1.20022 0.83616 0.87492 0.78645 1.90624 1.82356 1.20035 1.49464 1.48137 1.07379 1.10795 1.64947 1.22055 1.02895 0.83186 0.99309 1.19107 0.82679 0.91806 0.92604 0.91649 1.22174 1.00408 1.00032 0.97663 1.22109 1.36850 0.96570 1.08913 0.92704 1.25804 0.96246 0.94406 1.01548 1.70715 1.42591 1.12326 1.28329 0.83474 0.76271 0.74660 0.75344 1.21510 1.21258 1.21277 1.22493 0.80937 0.97545 0.99646 0.89430 0.88985 0.89485 0.90069 0.90501 0.90599 0.87638 0.91974 0.92025 0.90564 0.93420 0.91904 0.90026 0.96065 0.94034 0.92290 0.91586 0.90325 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.30 36.00 0.33 -0.99 16 2 C 0.53 6.84 8.02 -10.99 -0.09 6.75 16 3 O -0.55 -9.39 17.35 5.56 0.10 -9.30 16 4 N -0.62 -7.89 3.32 -169.33 -0.56 -8.45 16 5 C 0.10 1.06 6.92 -2.41 -0.02 1.04 16 6 C -0.12 -1.53 6.24 -25.33 -0.16 -1.69 16 7 C -0.09 -1.38 0.68 -154.27 -0.10 -1.49 16 8 C -0.15 -1.83 7.98 37.16 0.30 -1.54 16 9 C 0.52 10.29 6.37 -10.99 -0.07 10.22 16 10 O -0.55 -12.97 14.60 5.56 0.08 -12.89 16 11 N -0.58 -12.06 2.75 -175.27 -0.48 -12.54 16 12 C 0.07 1.15 7.67 59.85 0.46 1.61 16 13 C 0.24 5.89 2.35 -69.08 -0.16 5.73 16 14 H 0.07 1.87 5.44 -51.93 -0.28 1.59 16 15 C -0.14 -3.18 9.25 37.16 0.34 -2.84 16 16 C -0.61 -16.28 8.10 -34.44 -0.28 -16.56 16 17 H 0.05 1.46 6.74 -52.49 -0.35 1.10 16 18 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 19 N -0.90 -26.93 13.63 55.43 0.76 -26.17 16 20 Si 1.07 24.85 29.91 -169.99 -5.08 19.76 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.12 1.70 4.61 -2.42 -0.01 1.69 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 27 H 0.09 0.52 7.95 -51.93 -0.41 0.10 16 28 H 0.08 0.59 7.30 -51.93 -0.38 0.21 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.79 7.71 -51.92 -0.40 0.39 16 31 H 0.11 1.54 6.46 -51.93 -0.34 1.21 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.95 4.43 -51.93 -0.23 0.72 16 35 H 0.05 0.69 6.39 -51.93 -0.33 0.35 16 36 H 0.06 0.94 3.91 -51.93 -0.20 0.74 16 37 H 0.08 1.46 6.70 -51.93 -0.35 1.11 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.27 8.18 6.66 -40.82 -0.27 7.91 16 42 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 43 H 0.09 1.38 5.89 -51.93 -0.31 1.08 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -33.84 333.75 -6.12 -39.97 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.41 Total: 2.02 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 0.45 Total: 2.56 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.29 Total: -47.16 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.18 Total: -22.18 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.84 -6.12 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518825644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.547 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds