Wall clock time and date at job start Tue Mar 31 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99879 * 2 1 4 4 N 1.34778 * 119.99671 * 180.02562 * 2 1 3 5 5 C 1.48147 * 127.83927 * 0.02562 * 4 2 1 6 6 C 1.54389 * 104.61546 * 140.39380 * 5 4 2 7 7 C 1.54283 * 104.95818 * 23.86958 * 6 5 4 8 8 C 1.52996 * 110.34248 * 241.01745 * 7 6 5 9 9 C 1.50706 * 110.34379 * 118.86856 * 7 6 5 10 10 O 1.21285 * 119.99852 * 358.93983 * 9 7 6 11 11 N 1.34779 * 120.00250 * 178.94068 * 9 7 6 12 12 C 1.46507 * 119.99889 * 5.11967 * 11 9 7 13 13 C 1.46494 * 120.00072 * 185.12191 * 11 9 7 14 14 H 1.09003 * 109.47064 * 359.97438 * 13 11 9 15 15 C 1.53002 * 109.47104 * 239.99848 * 13 11 9 16 16 C 1.50698 * 109.47188 * 119.99940 * 13 11 9 17 17 H 1.08001 * 120.00186 * 5.28438 * 16 13 11 18 18 C 1.37876 * 120.00111 * 185.28139 * 16 13 11 19 19 N 1.31520 * 120.00178 * 185.42697 * 18 16 13 20 20 Si 1.86802 * 120.00147 * 5.43336 * 18 16 13 21 21 H 1.48501 * 109.46855 * 270.00013 * 20 18 16 22 22 H 1.48503 * 109.46924 * 29.99431 * 20 18 16 23 23 H 1.48494 * 109.47420 * 149.99592 * 20 18 16 24 24 C 1.48145 * 127.83468 * 179.97438 * 4 2 1 25 25 H 1.09005 * 109.47436 * 270.00095 * 1 2 3 26 26 H 1.08997 * 109.47376 * 29.99761 * 1 2 3 27 27 H 1.08998 * 109.47602 * 150.00011 * 1 2 3 28 28 H 1.09001 * 110.40906 * 21.61418 * 5 4 2 29 29 H 1.08995 * 110.40628 * 259.18226 * 5 4 2 30 30 H 1.08992 * 110.34707 * 264.99871 * 6 5 4 31 31 H 1.09002 * 110.34182 * 142.73482 * 6 5 4 32 32 H 1.08998 * 109.47813 * 298.52952 * 8 7 6 33 33 H 1.08999 * 109.46852 * 58.52935 * 8 7 6 34 34 H 1.09005 * 109.46972 * 178.52435 * 8 7 6 35 35 H 1.09001 * 109.46896 * 274.88911 * 12 11 9 36 36 H 1.09005 * 109.46762 * 34.88367 * 12 11 9 37 37 H 1.08996 * 109.47107 * 154.88603 * 12 11 9 38 38 H 1.08995 * 109.47205 * 294.76283 * 15 13 11 39 39 H 1.09002 * 109.46837 * 54.76376 * 15 13 11 40 40 H 1.08995 * 109.46924 * 174.76242 * 15 13 11 41 41 H 0.96997 * 119.99740 * 354.99394 * 19 18 16 42 42 H 1.09001 * 110.40591 * 100.81882 * 24 4 2 43 43 H 1.08995 * 110.40786 * 338.38911 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.6219 -2.5393 -0.0017 6 6 2.5413 -3.3336 -0.9542 7 6 3.8774 -2.5622 -0.9534 8 6 4.2053 -2.0649 -2.3627 9 6 4.9886 -3.4395 -0.4368 10 8 4.7492 -4.5731 -0.0780 11 7 6.2483 -2.9645 -0.3736 12 6 6.5196 -1.5623 -0.7000 13 6 7.3462 -3.8503 0.0216 14 1 6.9540 -4.8469 0.2243 15 6 8.0167 -3.3004 1.2821 16 6 8.3574 -3.9251 -1.0933 17 1 8.2424 -3.3038 -1.9692 18 6 9.4293 -4.7867 -0.9951 19 7 10.3680 -4.7761 -1.9162 20 14 9.5482 -5.9693 0.4460 21 1 10.2862 -5.3203 1.5592 22 1 8.1824 -6.3320 0.9026 23 1 10.2702 -7.1956 0.0218 24 6 3.6485 -1.3693 -0.0011 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 0.5991 -2.5327 -0.3784 29 1 1.6557 -2.9642 1.0015 30 1 2.1176 -3.3566 -1.9582 31 1 2.6887 -4.3471 -0.5810 32 1 4.3125 -2.9175 -3.0332 33 1 3.3995 -1.4224 -2.7178 34 1 5.1374 -1.5002 -2.3410 35 1 6.6477 -1.4583 -1.7775 36 1 5.6834 -0.9446 -0.3723 37 1 7.4295 -1.2407 -0.1932 38 1 8.4894 -2.3449 1.0549 39 1 7.2666 -3.1587 2.0602 40 1 8.7716 -4.0058 1.6293 41 1 10.2708 -4.2148 -2.7013 42 1 3.9992 -1.6113 1.0021 43 1 4.1543 -0.4802 -0.3774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518825653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:59 Heat of formation + Delta-G solvation = -54.997482 kcal Electronic energy + Delta-G solvation = -23727.571434 eV Core-core repulsion = 20387.519355 eV Total energy + Delta-G solvation = -3340.052079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79672 -39.21481 -37.20873 -35.62649 -33.58720 -32.49011 -30.52606 -30.08754 -29.23484 -26.59410 -26.40316 -24.80725 -23.66675 -22.57906 -19.95267 -19.59335 -18.22908 -17.54094 -17.14772 -16.80689 -15.78209 -15.63136 -15.16421 -14.76593 -14.29290 -14.01738 -13.89669 -13.60254 -13.18039 -12.91894 -12.88135 -12.67622 -12.60211 -12.28983 -12.22037 -12.17394 -11.92603 -11.62568 -11.41133 -11.26397 -11.18158 -10.89377 -10.69411 -10.49334 -10.08773 -10.03236 -9.75337 -9.14300 -8.93608 -8.88150 -8.52191 -7.84017 -6.49103 -4.18593 2.45357 2.73469 3.13147 3.33303 3.44767 3.57282 3.70674 4.24031 4.42166 4.43942 4.64008 4.75515 4.87980 4.99896 5.12362 5.14033 5.15450 5.24277 5.33561 5.40323 5.53451 5.60098 5.67475 5.77119 5.80588 5.83959 5.91108 6.05632 6.12655 6.19503 6.25332 6.31650 6.37280 6.51503 6.85192 7.10776 7.35008 7.38055 7.78874 7.97113 8.21881 8.31197 8.68992 8.87874 9.51907 10.88523 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.004483 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.532632 B = 6243.846870 C = 6404.995989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.530 3.470 3 O -0.550 6.550 4 N -0.622 5.622 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.093 4.093 8 C -0.147 4.147 9 C 0.519 3.481 10 O -0.549 6.549 11 N -0.581 5.581 12 C 0.074 3.926 13 C 0.228 3.772 14 H 0.062 0.938 15 C -0.159 4.159 16 C -0.602 4.602 17 H 0.061 0.939 18 C 0.033 3.967 19 N -0.908 5.908 20 Si 1.049 2.951 21 H -0.282 1.282 22 H -0.275 1.275 23 H -0.288 1.288 24 C 0.116 3.884 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.267 0.733 42 H 0.075 0.925 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.558 6.760 3.301 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.320 3.680 3 O -0.427 6.427 4 N -0.357 5.357 5 C -0.022 4.022 6 C -0.162 4.162 7 C -0.097 4.097 8 C -0.204 4.204 9 C 0.305 3.695 10 O -0.428 6.428 11 N -0.311 5.311 12 C -0.070 4.070 13 C 0.126 3.874 14 H 0.080 0.920 15 C -0.218 4.218 16 C -0.641 4.641 17 H 0.079 0.921 18 C -0.172 4.172 19 N -0.542 5.542 20 Si 0.878 3.122 21 H -0.209 1.209 22 H -0.201 1.201 23 H -0.214 1.214 24 C -0.006 4.006 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.415 5.696 4.184 18.795 hybrid contribution -0.802 1.207 -0.860 1.685 sum -18.217 6.903 3.324 19.762 Atomic orbital electron populations 1.21879 0.91394 1.04816 1.04736 1.20450 0.90257 0.81756 0.75498 1.90732 1.70772 1.30558 1.50686 1.49143 1.07652 1.05970 1.72954 1.22525 0.98083 0.81089 1.00538 1.22642 0.92333 1.00986 1.00239 1.21648 0.95298 0.95461 0.97338 1.22085 1.02904 1.01884 0.93518 1.20016 0.83524 0.87447 0.78500 1.90608 1.82581 1.19712 1.49889 1.47864 1.06989 1.11069 1.65131 1.22025 1.01817 0.82355 1.00777 1.19428 0.84346 0.90278 0.93340 0.92023 1.22415 0.99652 1.01613 0.98072 1.22244 1.10392 1.26609 1.04807 0.92086 1.25691 0.91793 0.97340 1.02415 1.70827 1.32413 1.40728 1.10261 0.83945 0.76557 0.76583 0.75074 1.20913 1.20053 1.21414 1.22483 0.81129 0.97764 0.99260 0.88857 0.88873 0.90099 0.89928 0.90555 0.90439 0.87586 0.91690 0.92046 0.90439 0.92614 0.92027 0.90559 0.92794 0.95029 0.92819 0.92253 0.90676 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.96 36.01 0.36 -0.86 16 2 C 0.53 6.39 8.02 -10.98 -0.09 6.30 16 3 O -0.55 -8.95 17.37 5.56 0.10 -8.85 16 4 N -0.62 -7.24 3.32 -169.33 -0.56 -7.80 16 5 C 0.10 0.95 6.91 -2.41 -0.02 0.93 16 6 C -0.12 -1.46 6.24 -25.33 -0.16 -1.62 16 7 C -0.09 -1.32 0.68 -154.28 -0.10 -1.43 16 8 C -0.15 -1.96 7.98 37.16 0.30 -1.66 16 9 C 0.52 9.90 6.37 -10.98 -0.07 9.83 16 10 O -0.55 -12.22 14.60 5.55 0.08 -12.14 16 11 N -0.58 -11.68 2.75 -175.25 -0.48 -12.16 16 12 C 0.07 1.22 7.95 59.85 0.48 1.69 16 13 C 0.23 5.41 2.20 -69.09 -0.15 5.26 16 14 H 0.06 1.62 5.41 -51.93 -0.28 1.34 16 15 C -0.16 -3.38 8.66 37.16 0.32 -3.06 16 16 C -0.60 -16.36 8.77 -34.44 -0.30 -16.67 16 17 H 0.06 1.77 7.79 -52.49 -0.41 1.36 16 18 C 0.03 0.93 5.43 -17.82 -0.10 0.83 16 19 N -0.91 -27.41 13.70 55.43 0.76 -26.65 16 20 Si 1.05 25.37 25.30 -169.99 -4.30 21.07 16 21 H -0.28 -6.39 6.81 56.52 0.38 -6.01 16 22 H -0.27 -6.42 6.36 56.52 0.36 -6.06 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 C 0.12 1.54 4.61 -2.43 -0.01 1.53 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.42 6.52 -51.93 -0.34 0.08 16 28 H 0.08 0.53 6.51 -51.93 -0.34 0.19 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.80 7.71 -51.93 -0.40 0.40 16 31 H 0.11 1.46 6.46 -51.93 -0.34 1.12 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.06 4.43 -51.93 -0.23 0.83 16 35 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 36 H 0.06 0.85 3.90 -51.93 -0.20 0.65 16 37 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 38 H 0.05 1.09 6.87 -51.93 -0.36 0.73 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 1.16 4.41 -51.93 -0.23 0.93 16 41 H 0.27 8.02 8.72 -40.82 -0.36 7.67 16 42 H 0.08 1.04 7.85 -51.93 -0.41 0.64 16 43 H 0.10 1.30 5.89 -51.93 -0.31 0.99 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -33.86 325.35 -5.30 -39.16 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.25 Total: 1.38 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 0.45 Total: 1.08 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.28 Total: -46.60 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.18 Total: -20.99 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.30 Total: 21.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.86 -5.30 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518825653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.837 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds