Wall clock time and date at job start Tue Mar 31 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46889 * 2 1 4 4 O 1.42898 * 109.47444 * 240.00114 * 2 1 3 5 5 C 1.42906 * 113.99824 * 89.99957 * 4 2 1 6 6 C 1.53006 * 109.46752 * 180.02562 * 5 4 2 7 7 C 1.53003 * 117.49663 * 243.74346 * 6 5 4 8 8 C 1.53002 * 117.49643 * 175.08315 * 6 5 4 9 9 C 1.50698 * 109.47457 * 119.99862 * 2 1 3 10 10 O 1.21277 * 120.00152 * 120.00144 * 9 2 1 11 11 N 1.34782 * 119.99816 * 300.00199 * 9 2 1 12 12 C 1.46502 * 119.99528 * 179.97438 * 11 9 2 13 13 H 1.08996 * 110.64672 * 323.31826 * 12 11 9 14 14 C 1.55164 * 110.71825 * 199.97629 * 12 11 9 15 15 C 1.54912 * 101.58260 * 277.14538 * 14 12 11 16 16 N 1.47420 * 104.82909 * 322.99027 * 15 14 12 17 17 C 1.36942 * 125.64355 * 204.16222 * 16 15 14 18 18 H 1.08001 * 120.00182 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00006 * 359.96072 * 17 16 15 20 20 N 1.31619 * 120.00226 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47211 * 90.00378 * 21 19 17 23 23 H 1.48502 * 109.47302 * 210.00070 * 21 19 17 24 24 H 1.48499 * 109.47600 * 330.00480 * 21 19 17 25 25 C 1.47015 * 108.70786 * 24.13335 * 16 15 14 26 26 H 1.08999 * 109.46680 * 60.00294 * 1 2 3 27 27 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46987 * 299.99975 * 1 2 3 29 29 H 1.08993 * 109.47732 * 60.00254 * 5 4 2 30 30 H 1.09000 * 109.47141 * 299.99893 * 5 4 2 31 31 H 1.09002 * 115.55153 * 29.41552 * 6 5 4 32 32 H 1.08998 * 117.49856 * 0.02562 * 7 6 5 33 33 H 1.09000 * 117.49861 * 145.02337 * 7 6 5 34 34 H 1.08993 * 117.50251 * 214.97577 * 8 6 5 35 35 H 1.09003 * 117.49715 * 0.02562 * 8 6 5 36 36 H 0.96998 * 119.99910 * 0.02562 * 11 9 2 37 37 H 1.08996 * 110.99865 * 35.22048 * 14 12 11 38 38 H 1.08996 * 110.99895 * 159.07101 * 14 12 11 39 39 H 1.08994 * 110.36310 * 204.15180 * 15 14 12 40 40 H 1.08995 * 110.45736 * 81.87606 * 15 14 12 41 41 H 0.96994 * 120.00274 * 179.97438 * 20 19 17 42 42 H 1.09008 * 109.87838 * 239.51993 * 25 16 15 43 43 H 1.08994 * 109.88665 * 118.35842 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1831 -2.2940 6 6 2.7080 -0.6407 -3.4792 7 6 4.1061 -0.3225 -4.0132 8 6 2.8686 0.0767 -4.8210 9 6 2.0324 -0.7104 1.2304 10 8 2.7297 -1.6964 1.1192 11 7 1.7068 -0.2498 2.4546 12 6 2.1948 -0.9408 3.6507 13 1 2.2106 -2.0190 3.4921 14 6 1.3300 -0.5764 4.8864 15 6 1.9630 0.7683 5.3234 16 7 3.4072 0.6028 5.0782 17 6 4.4079 1.2928 5.7089 18 1 5.4399 1.0975 5.4576 19 6 4.0958 2.2436 6.6709 20 7 2.8381 2.4816 6.9773 21 14 5.4609 3.1844 7.5316 22 1 5.7686 4.4200 6.7675 23 1 5.0234 3.5470 8.9036 24 1 6.6761 2.3343 7.6080 25 6 3.5952 -0.4262 4.0452 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.9320 0.9515 -2.0450 30 1 1.2538 0.6548 -2.5588 31 1 2.3860 -1.6818 -3.5005 32 1 4.6642 0.4733 -3.5199 33 1 4.7037 -1.1543 -4.3862 34 1 2.6528 -0.4925 -5.7251 35 1 2.6129 1.1356 -4.8593 36 1 1.1488 0.5386 2.5435 37 1 0.2850 -0.4436 4.6063 38 1 1.4306 -1.3282 5.6690 39 1 1.7761 0.9492 6.3818 40 1 1.5678 1.5881 4.7236 41 1 2.6200 3.1457 7.6498 42 1 4.1929 -1.2463 4.4433 43 1 4.0894 0.0073 3.1758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566657589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:34 Heat of formation + Delta-G solvation = -30.851391 kcal Electronic energy + Delta-G solvation = -22406.997209 eV Core-core repulsion = 19067.992183 eV Total energy + Delta-G solvation = -3339.005026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92448 -38.46941 -37.29342 -36.43758 -33.88048 -32.25847 -31.02016 -29.10856 -27.29051 -27.20974 -24.74813 -23.88619 -22.64300 -21.07169 -20.50511 -20.20884 -19.73629 -17.37305 -17.18792 -16.67401 -16.01153 -15.86171 -15.17881 -14.68304 -14.54096 -14.33646 -13.92160 -13.74735 -13.27746 -13.08369 -12.73752 -12.51940 -12.40107 -12.00870 -11.82677 -11.67689 -11.61677 -11.19877 -11.06804 -10.88891 -10.76270 -10.71683 -10.52079 -10.39306 -10.12891 -9.90668 -9.84315 -9.59915 -9.26879 -8.73319 -8.60568 -6.84964 -5.67605 -3.08342 2.84799 2.92133 3.39158 3.44557 3.46510 3.50930 3.87684 4.48338 4.54783 4.61727 4.71365 4.79423 4.85112 4.98329 5.08296 5.20022 5.32714 5.34984 5.39785 5.43974 5.44382 5.49409 5.56893 5.63714 5.75778 5.83627 5.86345 5.93082 5.95887 6.26522 6.36309 6.48196 6.55778 6.73540 6.94840 7.10031 7.41226 7.61311 7.78260 7.84321 8.33233 8.50353 9.20837 9.81384 10.45899 11.36734 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.003423 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.036283 B = 8178.262129 C = 8821.278346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.353 6.353 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.514 3.486 10 O -0.525 6.525 11 N -0.708 5.708 12 C 0.133 3.867 13 H 0.088 0.912 14 C -0.152 4.152 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -3.123 -17.828 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.271 6.271 5 C 0.013 3.987 6 C -0.169 4.169 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.298 3.702 10 O -0.400 6.400 11 N -0.361 5.361 12 C 0.028 3.972 13 H 0.106 0.894 14 C -0.191 4.191 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.574 5.574 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.029 -3.895 -17.749 19.145 hybrid contribution 0.418 1.288 0.404 1.413 sum -5.611 -2.607 -17.346 18.416 Atomic orbital electron populations 1.22235 0.93694 1.03733 1.03064 1.21899 0.94934 0.96473 0.85782 0.89587 1.88030 1.86527 1.33877 1.18714 1.22111 0.99180 0.92031 0.85336 1.22099 1.00535 1.01044 0.93220 1.23089 0.90862 1.03661 1.03737 1.22990 1.02726 1.01045 0.94464 1.20235 0.80718 0.85011 0.84225 1.90700 1.36904 1.25926 1.86509 1.45926 1.53288 1.31879 1.05005 1.21996 0.95225 0.96220 0.83755 0.89434 1.23337 0.97867 1.02030 0.95912 1.21946 0.82584 0.89527 1.03295 1.44521 1.02617 1.43070 1.42807 1.19103 0.87144 1.13904 1.14612 0.90522 1.24769 0.96576 0.99645 0.99775 1.69774 1.15194 1.36671 1.35719 0.86061 0.80784 0.79787 0.78814 1.21703 1.21651 1.20685 1.21691 0.93826 0.92319 0.92140 0.91433 0.91095 0.90753 0.92984 0.92785 0.86740 0.88569 0.88552 0.88442 0.88701 0.76626 0.91692 0.90532 0.87400 0.97183 0.93773 0.95055 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.42 37.16 0.35 -1.29 16 2 C 0.07 0.90 3.14 -27.88 -0.09 0.81 16 3 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 4 O -0.35 -4.98 9.52 -55.14 -0.52 -5.50 16 5 C 0.09 0.95 6.03 37.16 0.22 1.17 16 6 C -0.15 -1.48 6.05 -90.61 -0.55 -2.03 16 7 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 8 C -0.18 -1.32 10.26 -26.69 -0.27 -1.59 16 9 C 0.51 8.51 7.23 -10.98 -0.08 8.43 16 10 O -0.53 -10.90 16.22 -14.35 -0.23 -11.14 16 11 N -0.71 -11.25 5.01 -52.03 -0.26 -11.51 16 12 C 0.13 2.42 3.25 -66.09 -0.21 2.20 16 13 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 14 C -0.15 -2.73 6.64 -24.58 -0.16 -2.89 16 15 C 0.15 3.50 5.87 -2.53 -0.01 3.49 16 16 N -0.60 -15.42 3.39 -170.08 -0.58 -15.99 16 17 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.81 6.98 -3.07 -0.02 2.79 16 26 H 0.07 0.53 7.87 -51.93 -0.41 0.13 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 29 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 30 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 5.53 8.03 -40.82 -0.33 5.20 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -32.87 351.92 -9.35 -42.22 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.24 Total: 2.97 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.35 Total: 2.51 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.28 Total: -53.40 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.76 Total: -16.64 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.87 -9.35 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566657589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.370 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds