Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46986 * 2 1 4 4 O 1.42898 * 109.47257 * 120.00091 * 2 1 3 5 5 C 1.42901 * 114.00015 * 270.00199 * 4 2 1 6 6 C 1.52994 * 109.47180 * 180.02562 * 5 4 2 7 7 C 1.52993 * 117.51967 * 116.28228 * 6 5 4 8 8 C 1.52998 * 117.49943 * 184.91397 * 6 5 4 9 9 C 1.50701 * 109.47045 * 240.00048 * 2 1 3 10 10 O 1.21275 * 119.99947 * 245.00311 * 9 2 1 11 11 N 1.34777 * 120.00037 * 64.99924 * 9 2 1 12 12 C 1.46499 * 120.00053 * 179.97438 * 11 9 2 13 13 H 1.08999 * 110.63985 * 323.31568 * 12 11 9 14 14 C 1.55157 * 110.72190 * 199.97581 * 12 11 9 15 15 C 1.54915 * 101.58085 * 277.14144 * 14 12 11 16 16 N 1.47428 * 104.83185 * 322.98653 * 15 14 12 17 17 C 1.36934 * 125.64772 * 204.16705 * 16 15 14 18 18 H 1.08004 * 119.99878 * 161.48705 * 17 16 15 19 19 C 1.38808 * 119.99926 * 341.48139 * 17 16 15 20 20 N 1.31626 * 119.99766 * 157.61464 * 19 17 16 21 21 Si 1.86798 * 120.00249 * 337.61224 * 19 17 16 22 22 H 1.48501 * 109.47048 * 84.53810 * 21 19 17 23 23 H 1.48505 * 109.47327 * 204.53731 * 21 19 17 24 24 H 1.48503 * 109.47101 * 324.53637 * 21 19 17 25 25 C 1.47024 * 108.70097 * 24.13160 * 16 15 14 26 26 H 1.09000 * 109.47427 * 60.00068 * 1 2 3 27 27 H 1.09008 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47346 * 299.99669 * 1 2 3 29 29 H 1.09003 * 109.46896 * 59.99611 * 5 4 2 30 30 H 1.08999 * 109.46535 * 300.00060 * 5 4 2 31 31 H 1.09003 * 115.54951 * 330.57952 * 6 5 4 32 32 H 1.09002 * 117.49786 * 214.97175 * 7 6 5 33 33 H 1.09000 * 117.50089 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.49645 * 359.97153 * 8 6 5 35 35 H 1.09002 * 117.50260 * 144.99721 * 8 6 5 36 36 H 0.97006 * 119.99789 * 359.97438 * 11 9 2 37 37 H 1.08995 * 111.00342 * 35.21209 * 14 12 11 38 38 H 1.08996 * 111.00686 * 159.06428 * 14 12 11 39 39 H 1.09005 * 110.36047 * 204.15206 * 15 14 12 40 40 H 1.08998 * 110.46093 * 81.87833 * 15 14 12 41 41 H 0.97001 * 119.99421 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.88412 * 239.51949 * 25 16 15 43 43 H 1.09000 * 109.88300 * 118.35851 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7091 -0.6406 3.4788 7 6 4.1068 -0.3215 4.0129 8 6 2.8699 0.0767 4.8206 9 6 2.0323 -0.7104 -1.2305 10 8 2.6529 -1.7467 -1.1215 11 7 1.7919 -0.1942 -2.4520 12 6 2.2807 -0.8845 -3.6482 13 1 3.2555 -1.3346 -3.4606 14 6 2.3436 0.0876 -4.8558 15 6 0.8778 0.0575 -5.3561 16 7 0.4433 -1.3387 -5.1676 17 6 -0.5611 -1.9621 -5.8587 18 1 -0.6163 -3.0406 -5.8754 19 6 -1.5083 -1.2080 -6.5375 20 7 -2.1858 -1.7424 -7.5314 21 14 -1.8217 0.5651 -6.0404 22 1 -0.8328 1.4487 -6.7088 23 1 -3.1937 0.9590 -6.4499 24 1 -1.6876 0.6973 -4.5673 25 6 1.2677 -1.9509 -4.1154 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.2537 0.6546 2.5588 30 1 2.9319 0.9513 2.0449 31 1 2.3878 -1.6819 3.5001 32 1 4.7051 -1.1530 4.3856 33 1 4.6643 0.4750 3.5200 34 1 2.6135 1.1354 4.8592 35 1 2.6545 -0.4927 5.7247 36 1 1.2951 0.6345 -2.5392 37 1 2.6266 1.0904 -4.5358 38 1 3.0253 -0.2835 -5.6210 39 1 0.8312 0.3302 -6.4104 40 1 0.2589 0.7308 -4.7631 41 1 -2.8480 -1.2155 -8.0055 42 1 1.7975 -2.8154 -4.5154 43 1 0.6369 -2.2543 -3.2798 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566657592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -28.066661 kcal Electronic energy + Delta-G solvation = -22552.454465 eV Core-core repulsion = 19213.570194 eV Total energy + Delta-G solvation = -3338.884271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06766 -38.61791 -37.56308 -36.56726 -33.99500 -32.32017 -31.30983 -29.47620 -27.97536 -27.35384 -24.68319 -23.83661 -22.71373 -21.16424 -20.98382 -20.60792 -19.81591 -17.49646 -17.31920 -16.69577 -16.15069 -15.84074 -15.34439 -15.23289 -14.68973 -14.41492 -14.20359 -13.74196 -13.39331 -13.28034 -13.03872 -12.70781 -12.45117 -12.24441 -11.90210 -11.76043 -11.67890 -11.49886 -11.26614 -11.16974 -11.02253 -10.96217 -10.79044 -10.58475 -10.18358 -10.03975 -9.93166 -9.47948 -9.37546 -8.84468 -8.70229 -7.05294 -5.94845 -3.24959 2.70610 2.82435 3.29934 3.42089 3.42663 3.46016 3.77473 4.46159 4.52501 4.54698 4.61859 4.72263 4.76488 4.89233 4.96816 4.99731 5.00517 5.14181 5.28167 5.28726 5.32867 5.41011 5.46249 5.54286 5.55504 5.56536 5.76288 5.86361 5.89628 6.00653 6.01138 6.13814 6.29310 6.51609 6.60831 6.66749 6.85083 6.96375 7.62506 7.72551 8.31227 8.36236 8.83708 9.68225 10.16587 11.21551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.003505 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.821758 B = 7985.919671 C = 8299.277289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.515 3.485 10 O -0.520 6.520 11 N -0.713 5.713 12 C 0.132 3.868 13 H 0.096 0.904 14 C -0.138 4.138 15 C 0.109 3.891 16 N -0.608 5.608 17 C -0.239 4.239 18 H 0.092 0.908 19 C 0.019 3.981 20 N -0.909 5.909 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.279 1.279 25 C 0.126 3.874 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.263 0.737 42 H 0.043 0.957 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 9.423 19.937 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.300 3.700 10 O -0.395 6.395 11 N -0.366 5.366 12 C 0.028 3.972 13 H 0.113 0.887 14 C -0.176 4.176 15 C -0.016 4.016 16 N -0.335 5.335 17 C -0.366 4.366 18 H 0.110 0.890 19 C -0.179 4.179 20 N -0.553 5.553 21 Si 0.716 3.284 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.205 1.205 25 C 0.000 4.000 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.452 8.401 19.857 23.961 hybrid contribution -0.763 1.724 0.176 1.893 sum 9.689 10.125 20.033 24.448 Atomic orbital electron populations 1.22243 0.93310 1.04312 1.03080 1.21880 0.95238 0.96002 0.85715 0.89918 1.88055 1.86461 1.33857 1.18684 1.22105 0.99149 0.91956 0.85397 1.22104 1.00405 1.01189 0.93232 1.23068 0.90875 1.03601 1.03826 1.22979 1.02598 1.01047 0.94558 1.20253 0.79955 0.85695 0.84146 1.90712 1.39537 1.22799 1.86428 1.45940 1.57686 1.27740 1.05283 1.22007 0.98009 0.93783 0.83437 0.88651 1.23057 0.99078 0.98579 0.96932 1.21975 0.91724 0.88228 0.99716 1.44801 1.39102 1.08576 1.41021 1.18664 1.01912 0.92446 1.23599 0.89025 1.25011 0.97592 0.97577 0.97698 1.69852 1.27723 1.37413 1.20314 0.86938 0.76270 0.86561 0.78668 1.21280 1.23122 1.20464 1.21760 0.92397 0.94390 0.91442 0.90695 0.90740 0.91366 0.92708 0.93159 0.86625 0.88534 0.88696 0.88720 0.88380 0.76774 0.91009 0.89457 0.92028 0.96013 0.92743 0.93943 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.07 0.88 3.13 -27.88 -0.09 0.79 16 3 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 4 O -0.35 -4.74 9.53 -55.09 -0.52 -5.27 16 5 C 0.09 0.87 6.03 37.15 0.22 1.10 16 6 C -0.15 -1.38 6.06 -90.63 -0.55 -1.93 16 7 C -0.18 -1.38 10.18 -26.73 -0.27 -1.66 16 8 C -0.17 -1.20 10.25 -26.73 -0.27 -1.47 16 9 C 0.51 8.02 7.18 -10.98 -0.08 7.94 16 10 O -0.52 -10.25 16.23 -14.30 -0.23 -10.48 16 11 N -0.71 -10.42 5.08 -52.03 -0.26 -10.69 16 12 C 0.13 2.17 3.25 -66.09 -0.21 1.96 16 13 H 0.10 1.54 7.69 -51.93 -0.40 1.14 16 14 C -0.14 -2.13 6.64 -24.58 -0.16 -2.29 16 15 C 0.11 2.23 4.68 -2.52 -0.01 2.22 16 16 N -0.61 -14.58 3.21 -170.06 -0.55 -15.12 16 17 C -0.24 -6.82 10.57 -15.06 -0.16 -6.98 16 18 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 19 C 0.02 0.56 5.43 -17.43 -0.09 0.47 16 20 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 21 Si 0.89 22.12 24.27 -169.99 -4.13 17.99 16 22 H -0.29 -6.79 6.49 56.52 0.37 -6.43 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.28 -6.73 6.66 56.52 0.38 -6.35 16 25 C 0.13 2.61 6.98 -3.06 -0.02 2.59 16 26 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 27 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.05 0.44 7.87 -51.93 -0.41 0.04 16 30 H 0.05 0.43 7.82 -51.93 -0.41 0.02 16 31 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.40 4.98 8.40 -40.82 -0.34 4.64 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.36 6.64 -51.93 -0.34 1.02 16 40 H 0.02 0.46 5.57 -51.93 -0.29 0.17 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -34.30 347.53 -8.28 -42.58 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.25 Total: 1.87 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.35 Total: 1.21 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.03 Total: -53.13 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.76 Total: -15.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.13 Total: 17.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.30 -8.28 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566657592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.511 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds