Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47136 * 2 1 4 4 C 1.42904 * 114.00221 * 185.14383 * 3 2 1 5 5 H 1.09002 * 109.47132 * 337.68810 * 4 3 2 6 6 C 1.50697 * 109.47106 * 217.68539 * 4 3 2 7 7 O 1.21284 * 120.00401 * 355.00250 * 6 4 3 8 8 N 1.34779 * 119.99811 * 174.99964 * 6 4 3 9 9 C 1.46502 * 119.99975 * 180.02562 * 8 6 4 10 10 H 1.08989 * 110.88950 * 328.88185 * 9 8 6 11 11 C 1.55156 * 111.00138 * 204.99918 * 9 8 6 12 12 C 1.54323 * 102.94494 * 277.42511 * 11 9 8 13 13 N 1.47023 * 107.27208 * 337.81476 * 12 11 9 14 14 C 1.36933 * 125.64915 * 178.98489 * 13 12 11 15 15 H 1.07993 * 120.00219 * 185.71051 * 14 13 12 16 16 C 1.38818 * 119.99952 * 5.71308 * 14 13 12 17 17 N 1.31617 * 119.99890 * 353.75374 * 16 14 13 18 18 Si 1.86800 * 119.99868 * 173.75608 * 16 14 13 19 19 H 1.48507 * 109.46777 * 94.98965 * 18 16 14 20 20 H 1.48499 * 109.47306 * 214.98627 * 18 16 14 21 21 H 1.48491 * 109.47385 * 334.99156 * 18 16 14 22 22 C 1.47427 * 108.70287 * 358.93174 * 13 12 11 23 23 C 1.52997 * 109.46951 * 97.68798 * 4 3 2 24 24 C 1.53007 * 117.51859 * 347.10371 * 23 4 3 25 25 C 1.52996 * 60.00029 * 107.47978 * 24 23 4 26 26 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46694 * 299.99616 * 1 2 3 28 28 H 1.08998 * 109.46872 * 59.99690 * 1 2 3 29 29 H 1.09000 * 109.47133 * 240.00458 * 2 1 3 30 30 H 1.09000 * 109.47390 * 120.00382 * 2 1 3 31 31 H 0.97004 * 120.00126 * 0.02562 * 8 6 4 32 32 H 1.08998 * 110.72433 * 35.79456 * 11 9 8 33 33 H 1.09001 * 110.71830 * 158.88794 * 11 9 8 34 34 H 1.09004 * 109.88086 * 97.22775 * 12 11 9 35 35 H 1.08996 * 109.88765 * 218.23483 * 12 11 9 36 36 H 0.97001 * 119.99585 * 180.02562 * 17 16 14 37 37 H 1.08996 * 110.36987 * 265.29423 * 22 13 12 38 38 H 1.08992 * 110.36322 * 142.96948 * 22 13 12 39 39 H 1.09002 * 115.55363 * 201.39801 * 23 4 3 40 40 H 1.09007 * 117.49380 * 214.97279 * 24 23 4 41 41 H 1.08995 * 117.49641 * 359.97438 * 24 23 4 42 42 H 1.08999 * 117.49783 * 252.50487 * 25 24 23 43 43 H 1.09004 * 117.49924 * 107.49095 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4259 1.4619 -0.1170 5 1 3.8935 0.5321 0.2071 6 6 3.9113 2.5965 0.7479 7 8 3.1128 3.3005 1.3291 8 7 5.2327 2.8289 0.8756 9 6 5.7046 3.9315 1.7169 10 1 4.9882 4.7528 1.7190 11 6 7.1063 4.4173 1.2622 12 6 8.0585 3.4127 1.9446 13 7 7.3356 2.8320 3.0856 14 6 7.8254 1.8806 3.9400 15 1 7.1833 1.4499 4.6939 16 6 9.1474 1.4698 3.8371 17 7 9.8953 1.9016 2.8439 18 14 9.8648 0.3041 5.1083 19 1 9.7629 -1.0922 4.6127 20 1 11.2915 0.6435 5.3419 21 1 9.1103 0.4339 6.3806 22 6 5.9966 3.4446 3.1582 23 6 3.7968 1.7378 -1.5755 24 6 2.7075 1.5392 -2.6316 25 6 3.1548 2.9518 -2.2502 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8714 2.2660 0.4105 32 1 7.2005 4.3625 0.1777 33 1 7.2955 5.4317 1.6135 34 1 8.3339 2.6267 1.2414 35 1 8.9534 3.9282 2.2932 36 1 10.8189 1.6142 2.7718 37 1 6.0019 4.2872 3.8496 38 1 5.2574 2.7051 3.4658 39 1 4.8205 1.4893 -1.8555 40 1 3.0148 1.1599 -3.6063 41 1 1.7266 1.2115 -2.2874 42 1 2.4680 3.5536 -1.6551 43 1 3.7562 3.5019 -2.9739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567890693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -31.200854 kcal Electronic energy + Delta-G solvation = -23102.984394 eV Core-core repulsion = 19763.964213 eV Total energy + Delta-G solvation = -3339.020180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10103 -38.39817 -36.92329 -36.11100 -33.67462 -31.90598 -31.43002 -29.30741 -28.20392 -26.76119 -24.41654 -23.12052 -22.37972 -21.75656 -20.32775 -20.07573 -19.63479 -17.36418 -16.92235 -16.75026 -16.39708 -15.64642 -15.02028 -14.66647 -14.60134 -14.19765 -13.86938 -13.61081 -13.27241 -12.74343 -12.66012 -12.42701 -12.20628 -11.94162 -11.80325 -11.58960 -11.44487 -11.27059 -10.99931 -10.88259 -10.70142 -10.65329 -10.47554 -10.32771 -10.13711 -9.96894 -9.83083 -9.67437 -9.14973 -8.71549 -8.49189 -6.82452 -5.74724 -3.06127 2.90553 3.05324 3.38052 3.44633 3.46590 3.61110 4.05808 4.49057 4.53105 4.77804 4.79908 4.92813 5.02533 5.17363 5.19579 5.25300 5.32342 5.36337 5.44582 5.50860 5.52856 5.58920 5.75622 5.77718 5.79940 5.85352 5.94653 6.05575 6.14033 6.21769 6.38842 6.50209 6.53513 6.70037 6.97976 7.12112 7.49543 7.58312 7.78320 7.92143 8.23476 8.58276 9.20507 9.80695 10.47208 11.37581 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.004312 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.451371 B = 6491.339484 C = 7002.162754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.103 3.897 5 H 0.091 0.909 6 C 0.518 3.482 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.130 3.870 10 H 0.090 0.910 11 C -0.153 4.153 12 C 0.176 3.824 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.125 3.875 23 C -0.181 4.181 24 C -0.167 4.167 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.251 0.749 37 H 0.028 0.972 38 H 0.041 0.959 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 -1.617 -11.422 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.041 3.959 5 H 0.108 0.892 6 C 0.303 3.697 7 O -0.408 6.408 8 N -0.351 5.351 9 C 0.024 3.976 10 H 0.108 0.892 11 C -0.192 4.192 12 C 0.051 3.949 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.740 3.260 19 H -0.218 1.218 20 H -0.216 1.216 21 H -0.207 1.207 22 C -0.002 4.002 23 C -0.200 4.200 24 C -0.203 4.203 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.236 0.764 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.472 -1.049 -10.930 17.380 hybrid contribution 1.114 -1.224 0.446 1.715 sum -12.357 -2.274 -10.484 16.364 Atomic orbital electron populations 1.21721 0.93584 1.02093 1.03252 1.22634 0.95745 0.83818 1.00323 1.88009 1.18828 1.26152 1.94112 1.21339 0.83540 0.98090 0.92911 0.89155 1.20190 0.82720 0.85353 0.81458 1.90680 1.54492 1.48363 1.47236 1.45727 1.06149 1.33907 1.49323 1.22130 0.95459 0.88487 0.91502 0.89226 1.23213 0.94929 1.00728 1.00294 1.21168 0.92196 0.92844 0.88708 1.44475 1.10852 1.45528 1.32227 1.19055 0.93938 1.13069 1.09343 0.90584 1.24786 0.96366 1.00631 0.98553 1.69962 1.07743 1.48303 1.30930 0.86143 0.78537 0.80229 0.81139 1.21779 1.21644 1.20666 1.21947 0.88819 0.96226 0.93238 1.22709 0.98954 1.05934 0.92374 1.22931 0.99190 1.00130 0.98093 1.22890 1.03394 0.90894 1.02920 0.91136 0.91634 0.91958 0.93030 0.93132 0.76387 0.91605 0.90957 0.94026 0.93487 0.93825 0.95403 0.94062 0.86441 0.88931 0.88036 0.88219 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.54 5.64 37.16 0.21 0.75 16 3 O -0.35 -4.94 8.22 -55.09 -0.45 -5.40 16 4 C 0.10 1.39 2.97 -27.89 -0.08 1.30 16 5 H 0.09 1.10 7.73 -51.93 -0.40 0.70 16 6 C 0.52 8.76 6.93 -10.99 -0.08 8.69 16 7 O -0.53 -10.95 16.15 -14.30 -0.23 -11.18 16 8 N -0.70 -11.57 5.15 -51.73 -0.27 -11.84 16 9 C 0.13 2.35 3.43 -65.78 -0.23 2.12 16 10 H 0.09 1.60 7.54 -51.94 -0.39 1.21 16 11 C -0.15 -2.70 6.55 -24.90 -0.16 -2.86 16 12 C 0.18 4.05 5.37 -3.06 -0.02 4.03 16 13 N -0.60 -15.12 3.39 -170.07 -0.58 -15.69 16 14 C -0.23 -6.24 10.27 -15.06 -0.15 -6.40 16 15 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -26.40 10.35 55.49 0.57 -25.82 16 18 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.12 2.69 6.93 -2.52 -0.02 2.67 16 23 C -0.18 -2.02 5.76 -90.62 -0.52 -2.54 16 24 C -0.17 -1.64 9.58 -26.73 -0.26 -1.89 16 25 C -0.16 -1.84 9.86 -26.73 -0.26 -2.11 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.46 7.60 -51.93 -0.39 0.07 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 6.21 8.67 -40.82 -0.35 5.86 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.04 1.04 7.54 -51.93 -0.39 0.64 16 35 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.10 1.03 6.25 -51.93 -0.32 0.71 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -32.08 349.76 -9.25 -41.33 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.26 Total: 3.91 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.28 Total: 2.52 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.27 Total: -53.35 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.68 Total: -16.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.08 -9.25 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567890693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.126 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds