Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47136 * 2 1 4 4 C 1.42904 * 114.00221 * 185.14383 * 3 2 1 5 5 H 1.09002 * 109.47132 * 337.68810 * 4 3 2 6 6 C 1.50697 * 109.47106 * 217.68539 * 4 3 2 7 7 O 1.21284 * 120.00401 * 355.00250 * 6 4 3 8 8 N 1.34779 * 119.99811 * 174.99964 * 6 4 3 9 9 C 1.46502 * 119.99975 * 180.02562 * 8 6 4 10 10 H 1.08989 * 110.88950 * 328.88185 * 9 8 6 11 11 C 1.55156 * 111.00138 * 204.99918 * 9 8 6 12 12 C 1.54323 * 102.94494 * 277.42511 * 11 9 8 13 13 N 1.47023 * 107.27208 * 337.81476 * 12 11 9 14 14 C 1.36933 * 125.64915 * 178.98489 * 13 12 11 15 15 H 1.07993 * 120.00219 * 185.71051 * 14 13 12 16 16 C 1.38818 * 119.99952 * 5.71308 * 14 13 12 17 17 N 1.31617 * 119.99890 * 353.75374 * 16 14 13 18 18 Si 1.86800 * 119.99868 * 173.75608 * 16 14 13 19 19 H 1.48507 * 109.46777 * 94.98965 * 18 16 14 20 20 H 1.48499 * 109.47306 * 214.98627 * 18 16 14 21 21 H 1.48491 * 109.47385 * 334.99156 * 18 16 14 22 22 C 1.47427 * 108.70287 * 358.93174 * 13 12 11 23 23 C 1.52997 * 109.46951 * 97.68798 * 4 3 2 24 24 C 1.53007 * 117.51859 * 347.10371 * 23 4 3 25 25 C 1.52996 * 60.00029 * 107.47978 * 24 23 4 26 26 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46694 * 299.99616 * 1 2 3 28 28 H 1.08998 * 109.46872 * 59.99690 * 1 2 3 29 29 H 1.09000 * 109.47133 * 240.00458 * 2 1 3 30 30 H 1.09000 * 109.47390 * 120.00382 * 2 1 3 31 31 H 0.97004 * 120.00126 * 0.02562 * 8 6 4 32 32 H 1.08998 * 110.72433 * 35.79456 * 11 9 8 33 33 H 1.09001 * 110.71830 * 158.88794 * 11 9 8 34 34 H 1.09004 * 109.88086 * 97.22775 * 12 11 9 35 35 H 1.08996 * 109.88765 * 218.23483 * 12 11 9 36 36 H 0.97001 * 119.99585 * 180.02562 * 17 16 14 37 37 H 1.08996 * 110.36987 * 265.29423 * 22 13 12 38 38 H 1.08992 * 110.36322 * 142.96948 * 22 13 12 39 39 H 1.09002 * 115.55363 * 201.39801 * 23 4 3 40 40 H 1.09007 * 117.49380 * 214.97279 * 24 23 4 41 41 H 1.08995 * 117.49641 * 359.97438 * 24 23 4 42 42 H 1.08999 * 117.49783 * 252.50487 * 25 24 23 43 43 H 1.09004 * 117.49924 * 107.49095 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4259 1.4619 -0.1170 5 1 3.8935 0.5321 0.2071 6 6 3.9113 2.5965 0.7479 7 8 3.1128 3.3005 1.3291 8 7 5.2327 2.8289 0.8756 9 6 5.7046 3.9315 1.7169 10 1 4.9882 4.7528 1.7190 11 6 7.1063 4.4173 1.2622 12 6 8.0585 3.4127 1.9446 13 7 7.3356 2.8320 3.0856 14 6 7.8254 1.8806 3.9400 15 1 7.1833 1.4499 4.6939 16 6 9.1474 1.4698 3.8371 17 7 9.8953 1.9016 2.8439 18 14 9.8648 0.3041 5.1083 19 1 9.7629 -1.0922 4.6127 20 1 11.2915 0.6435 5.3419 21 1 9.1103 0.4339 6.3806 22 6 5.9966 3.4446 3.1582 23 6 3.7968 1.7378 -1.5755 24 6 2.7075 1.5392 -2.6316 25 6 3.1548 2.9518 -2.2502 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8714 2.2660 0.4105 32 1 7.2005 4.3625 0.1777 33 1 7.2955 5.4317 1.6135 34 1 8.3339 2.6267 1.2414 35 1 8.9534 3.9282 2.2932 36 1 10.8189 1.6142 2.7718 37 1 6.0019 4.2872 3.8496 38 1 5.2574 2.7051 3.4658 39 1 4.8205 1.4893 -1.8555 40 1 3.0148 1.1599 -3.6063 41 1 1.7266 1.2115 -2.2874 42 1 2.4680 3.5536 -1.6551 43 1 3.7562 3.5019 -2.9739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567890693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = -51.119254 kcal Electronic energy + Delta-G solvation = -23103.848120 eV Core-core repulsion = 19763.964213 eV Total energy + Delta-G solvation = -3339.883907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33365 -39.68662 -38.46775 -36.98688 -35.38546 -33.66027 -32.32936 -31.08110 -29.58202 -28.25402 -26.35258 -23.94304 -23.25387 -22.87554 -21.95584 -21.57385 -20.99601 -18.99365 -18.24392 -17.95261 -17.55325 -17.05162 -16.58929 -15.95919 -15.79937 -15.58016 -15.51918 -14.96619 -14.70863 -14.04937 -13.85248 -13.60996 -13.53892 -13.42213 -13.13247 -12.92933 -12.78282 -12.43566 -12.30510 -12.28225 -12.17771 -12.07958 -12.00951 -11.79837 -11.60683 -11.57545 -11.31040 -10.77641 -10.70137 -10.37004 -10.05490 -8.85585 -7.86367 -5.19455 1.45659 1.47415 1.56485 1.59301 1.89164 2.49174 2.73984 3.00773 3.32922 3.61174 3.67492 3.72319 3.85956 3.90235 4.08102 4.15747 4.21716 4.25843 4.31906 4.37066 4.43164 4.48979 4.67824 4.75024 4.80448 4.83210 4.88942 4.98318 5.00228 5.02633 5.04883 5.19421 5.26603 5.34392 5.44873 5.56738 5.68992 5.76997 6.10144 6.20099 6.60446 7.11815 7.24989 7.76944 8.41931 9.24005 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.004312 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.451371 B = 6491.339484 C = 7002.162754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.377 6.377 4 C 0.106 3.894 5 H 0.103 0.897 6 C 0.516 3.484 7 O -0.573 6.573 8 N -0.694 5.694 9 C 0.142 3.858 10 H 0.098 0.902 11 C -0.132 4.132 12 C 0.184 3.816 13 N -0.620 5.620 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.055 4.055 17 N -0.943 5.943 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.275 1.275 22 C 0.123 3.877 23 C -0.184 4.184 24 C -0.148 4.148 25 C -0.174 4.174 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.409 0.591 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.012 0.988 36 H 0.248 0.752 37 H 0.030 0.970 38 H 0.025 0.975 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 -2.429 -12.838 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.044 3.956 5 H 0.121 0.879 6 C 0.303 3.697 7 O -0.452 6.452 8 N -0.346 5.346 9 C 0.036 3.964 10 H 0.116 0.884 11 C -0.171 4.171 12 C 0.059 3.941 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.249 4.249 17 N -0.592 5.592 18 Si 0.801 3.199 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.004 4.004 23 C -0.203 4.203 24 C -0.185 4.185 25 C -0.211 4.211 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.244 0.756 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.915 -1.870 -12.361 18.706 hybrid contribution 1.194 -0.975 0.932 1.801 sum -12.722 -2.845 -11.429 17.337 Atomic orbital electron populations 1.21743 0.92494 1.03493 1.02618 1.22866 0.96683 0.82489 1.01136 1.87992 1.18967 1.28290 1.94310 1.21329 0.83660 0.96829 0.93743 0.87937 1.20887 0.82219 0.85634 0.80997 1.90654 1.55434 1.50121 1.49010 1.45690 1.06445 1.33606 1.48810 1.21930 0.95926 0.89013 0.89557 0.88376 1.23067 0.92607 0.99822 1.01555 1.20962 0.92295 0.92937 0.87874 1.44695 1.12245 1.45308 1.32433 1.19330 0.94370 1.13771 1.09845 0.91015 1.25519 0.96645 1.02451 1.00301 1.70146 1.07598 1.49320 1.32110 0.85164 0.77354 0.78366 0.79041 1.21225 1.21860 1.20028 1.22046 0.86953 0.95616 0.95783 1.22732 1.00286 1.06241 0.91030 1.23001 0.98462 0.98512 0.98486 1.22856 1.03567 0.91404 1.03258 0.88700 0.93195 0.91647 0.90946 0.93495 0.75569 0.88626 0.89283 0.96226 0.96964 0.94270 0.95214 0.95614 0.84672 0.86515 0.88444 0.90912 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.87 5.64 71.98 0.41 1.28 16 3 O -0.38 -10.27 8.22 -129.99 -1.07 -11.34 16 4 C 0.11 2.73 2.97 29.85 0.09 2.81 16 5 H 0.10 2.35 7.73 -2.39 -0.02 2.33 16 6 C 0.52 17.18 6.93 87.66 0.61 17.79 16 7 O -0.57 -23.77 16.15 15.95 0.26 -23.51 16 8 N -0.69 -22.27 5.15 -435.96 -2.24 -24.51 16 9 C 0.14 4.98 3.43 46.38 0.16 5.14 16 10 H 0.10 3.38 7.54 -2.39 -0.02 3.36 16 11 C -0.13 -4.44 6.55 31.78 0.21 -4.23 16 12 C 0.18 8.52 5.37 86.73 0.47 8.99 16 13 N -0.62 -31.35 3.39 -691.99 -2.35 -33.69 16 14 C -0.24 -13.66 10.27 84.04 0.86 -12.80 16 15 H 0.07 3.96 7.84 -2.91 -0.02 3.94 16 16 C -0.06 -3.10 5.48 84.86 0.47 -2.63 16 17 N -0.94 -54.69 10.35 21.65 0.22 -54.46 16 18 Si 0.97 45.25 29.56 68.60 2.03 47.28 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.12 5.29 6.93 86.86 0.60 5.89 16 23 C -0.18 -3.69 5.76 -10.79 -0.06 -3.75 16 24 C -0.15 -2.50 9.58 30.60 0.29 -2.20 16 25 C -0.17 -3.61 9.86 30.59 0.30 -3.31 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.11 7.60 -2.39 -0.02 1.10 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.41 12.07 8.67 -92.71 -0.80 11.27 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.02 0.98 7.54 -2.39 -0.02 0.96 16 35 H 0.01 0.64 7.37 -2.39 -0.02 0.63 16 36 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.10 1.75 6.25 -2.39 -0.01 1.74 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.29 349.76 2.17 -68.12 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.19 Total: 20.82 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.14 Total: 11.31 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.37 Total: -112.67 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.81 Total: -34.85 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.29 2.17 -68.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567890693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.997 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds