Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47304 * 2 1 4 4 C 1.42897 * 114.00189 * 183.97445 * 3 2 1 5 5 H 1.08997 * 109.46853 * 330.40603 * 4 3 2 6 6 C 1.50699 * 109.47087 * 90.40668 * 4 3 2 7 7 O 1.21285 * 119.99913 * 5.00233 * 6 4 3 8 8 N 1.34776 * 120.00217 * 185.00047 * 6 4 3 9 9 C 1.46501 * 120.00182 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.88303 * 328.88188 * 9 8 6 11 11 C 1.55156 * 111.00480 * 205.00057 * 9 8 6 12 12 C 1.54320 * 102.94071 * 277.42660 * 11 9 8 13 13 N 1.47023 * 107.27570 * 337.80913 * 12 11 9 14 14 C 1.36936 * 125.64706 * 178.98584 * 13 12 11 15 15 H 1.08003 * 119.99359 * 179.97438 * 14 13 12 16 16 C 1.38800 * 120.00337 * 359.97184 * 14 13 12 17 17 N 1.31622 * 120.00213 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00046 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46858 * 60.00804 * 18 16 14 20 20 H 1.48501 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47543 * 300.00371 * 18 16 14 22 22 C 1.47422 * 108.69972 * 358.93783 * 13 12 11 23 23 C 1.53001 * 109.47276 * 210.40746 * 4 3 2 24 24 C 1.52997 * 117.50181 * 132.11570 * 23 4 3 25 25 C 1.52995 * 60.00001 * 252.50963 * 24 23 4 26 26 H 1.08998 * 109.47023 * 60.00081 * 1 2 3 27 27 H 1.08998 * 109.47555 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47396 * 300.00241 * 1 2 3 29 29 H 1.08996 * 109.47256 * 239.99350 * 2 1 3 30 30 H 1.09005 * 109.46640 * 119.99881 * 2 1 3 31 31 H 0.96998 * 119.99642 * 0.02562 * 8 6 4 32 32 H 1.09004 * 110.71963 * 35.79321 * 11 9 8 33 33 H 1.08997 * 110.71930 * 158.88899 * 11 9 8 34 34 H 1.09004 * 109.88183 * 97.22544 * 12 11 9 35 35 H 1.09003 * 109.88211 * 218.23234 * 12 11 9 36 36 H 0.97005 * 119.99861 * 179.97438 * 17 16 14 37 37 H 1.08991 * 110.36733 * 265.29103 * 22 13 12 38 38 H 1.09002 * 110.36421 * 142.96582 * 22 13 12 39 39 H 1.09004 * 115.54909 * 277.82302 * 23 4 3 40 40 H 1.09002 * 117.49484 * 359.97438 * 24 23 4 41 41 H 1.09004 * 117.49862 * 145.01708 * 24 23 4 42 42 H 1.08996 * 117.49985 * 252.50711 * 25 24 23 43 43 H 1.09004 * 117.51976 * 107.48274 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4279 1.4611 -0.0905 5 1 3.8922 0.5878 0.3676 6 6 3.8340 1.5440 -1.5394 7 8 2.9859 1.6005 -2.4045 8 7 5.1395 1.5554 -1.8737 9 6 5.5343 1.6354 -3.2823 10 1 4.7961 1.1503 -3.9208 11 6 6.9445 1.0261 -3.5001 12 6 7.8858 2.1853 -3.1106 13 7 7.1186 3.4328 -3.2394 14 6 7.5876 4.6900 -2.9661 15 1 6.9423 5.5466 -3.0935 16 6 8.8923 4.8634 -2.5254 17 7 9.6790 3.8195 -2.3705 18 14 9.5323 6.5785 -2.1532 19 1 8.7073 7.1931 -1.0823 20 1 10.9448 6.4928 -1.7029 21 1 9.4539 7.4130 -3.3790 22 6 5.7611 3.1062 -3.7127 23 6 3.8859 2.7247 0.6407 24 6 5.0579 2.5915 1.6151 25 6 3.6388 2.7970 2.1488 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 5.8178 1.5098 -1.1818 32 1 7.0988 0.1676 -2.8465 33 1 7.0861 0.7449 -4.5437 34 1 8.2206 2.0607 -2.0807 35 1 8.7458 2.2054 -3.7800 36 1 10.5909 3.9408 -2.0628 37 1 5.7055 3.1969 -4.7974 38 1 5.0271 3.7577 -3.2384 39 1 3.8062 3.6515 0.0726 40 1 5.5023 1.6035 1.7357 41 1 5.7496 3.4308 1.6881 42 1 3.3969 3.7715 2.5730 43 1 3.1496 1.9446 2.6202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567890694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -32.819246 kcal Electronic energy + Delta-G solvation = -23240.126736 eV Core-core repulsion = 19901.036377 eV Total energy + Delta-G solvation = -3339.090359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03792 -38.17340 -36.88927 -36.50183 -33.65742 -31.86484 -31.38419 -29.28669 -28.11088 -26.72743 -24.41038 -23.01539 -22.29649 -21.56289 -20.49024 -20.06240 -19.70702 -17.65095 -17.04879 -16.65062 -15.74365 -15.57741 -15.20041 -14.77295 -14.59751 -14.04069 -13.75941 -13.65399 -13.23785 -13.05719 -12.63945 -12.37950 -11.98292 -11.89779 -11.80115 -11.54731 -11.49582 -11.11327 -10.95617 -10.88762 -10.71076 -10.57844 -10.39838 -10.31512 -10.16467 -10.11993 -9.95748 -9.67471 -9.03431 -8.72057 -8.50032 -6.82000 -5.72192 -3.04545 2.83278 3.20064 3.39893 3.44681 3.45528 3.54955 4.13130 4.49904 4.62297 4.78599 4.83935 4.94828 5.02376 5.12417 5.18829 5.27788 5.33050 5.47191 5.48334 5.51065 5.58287 5.64735 5.78265 5.83000 5.84028 5.90861 6.02307 6.12845 6.16698 6.20818 6.37829 6.48715 6.53439 6.70497 6.99799 7.11407 7.52920 7.55451 7.78863 7.91488 8.24536 8.55894 9.21967 9.81909 10.47968 11.39656 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.004835 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.957693 B = 5789.841249 C = 6609.334201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.110 3.890 5 H 0.081 0.919 6 C 0.493 3.507 7 O -0.536 6.536 8 N -0.699 5.699 9 C 0.127 3.873 10 H 0.088 0.912 11 C -0.154 4.154 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.224 4.224 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.924 5.924 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.126 3.874 23 C -0.151 4.151 24 C -0.166 4.166 25 C -0.163 4.163 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.403 0.597 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.252 0.748 37 H 0.027 0.973 38 H 0.042 0.958 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -9.327 7.691 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.048 3.952 5 H 0.098 0.902 6 C 0.278 3.722 7 O -0.413 6.413 8 N -0.350 5.350 9 C 0.022 3.978 10 H 0.106 0.894 11 C -0.193 4.193 12 C 0.052 3.948 13 N -0.329 5.329 14 C -0.352 4.352 15 H 0.093 0.907 16 C -0.204 4.204 17 N -0.572 5.572 18 Si 0.741 3.259 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.001 4.001 23 C -0.170 4.170 24 C -0.203 4.203 25 C -0.200 4.200 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.237 0.763 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.817 -9.035 7.147 16.503 hybrid contribution 0.994 0.723 0.395 1.291 sum -10.823 -8.312 7.542 15.591 Atomic orbital electron populations 1.21698 0.93576 1.02002 1.03244 1.22547 0.95926 0.83863 0.99790 1.88010 1.18759 1.26312 1.93872 1.21443 0.83408 0.98098 0.92249 0.90162 1.21104 0.82939 0.76789 0.91411 1.90675 1.50468 1.49402 1.50757 1.45843 1.06726 1.73328 1.09126 1.22138 0.96136 0.97974 0.81599 0.89358 1.23224 0.95000 0.99641 1.01391 1.21153 0.91567 0.81945 1.00141 1.44451 1.07362 1.03044 1.78091 1.19003 0.95525 0.83139 1.37551 0.90664 1.24748 0.96424 0.97338 1.01850 1.69941 1.07140 1.27374 1.52728 0.86223 0.77808 0.83737 0.78139 1.21251 1.21639 1.21244 1.21929 0.88771 0.92912 0.96531 1.22060 1.04131 0.98279 0.92537 1.23088 0.91301 1.03897 1.01988 1.22840 0.98925 1.03323 0.94902 0.91544 0.91285 0.91969 0.93187 0.93631 0.76276 0.91707 0.91009 0.93613 0.93818 0.93802 0.95560 0.93980 0.86657 0.88543 0.87560 0.88478 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.64 6.43 37.16 0.24 0.87 16 3 O -0.35 -5.12 9.48 -55.09 -0.52 -5.64 16 4 C 0.11 1.51 2.69 -27.88 -0.08 1.44 16 5 H 0.08 0.91 7.60 -51.93 -0.39 0.51 16 6 C 0.49 8.36 7.13 -10.99 -0.08 8.28 16 7 O -0.54 -10.94 16.15 -14.31 -0.23 -11.17 16 8 N -0.70 -11.64 5.15 -51.73 -0.27 -11.91 16 9 C 0.13 2.30 3.43 -65.78 -0.23 2.08 16 10 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 11 C -0.15 -2.72 6.55 -24.90 -0.16 -2.88 16 12 C 0.18 4.07 5.36 -3.07 -0.02 4.05 16 13 N -0.60 -15.04 3.39 -170.08 -0.58 -15.62 16 14 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -26.33 10.31 55.49 0.57 -25.76 16 18 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 23 C -0.15 -2.03 5.31 -90.62 -0.48 -2.51 16 24 C -0.17 -1.91 10.18 -26.74 -0.27 -2.19 16 25 C -0.16 -1.78 10.21 -26.74 -0.27 -2.05 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.40 6.35 8.67 -40.82 -0.35 5.99 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16 35 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.78 8.13 -51.93 -0.42 1.36 16 40 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -31.78 354.37 -9.31 -41.10 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.37 Total: 4.67 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.23 Total: 2.10 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.27 Total: -53.28 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.75 Total: -16.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.78 -9.31 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567890694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.279 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds