Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47304 * 2 1 4 4 C 1.42897 * 114.00189 * 183.97445 * 3 2 1 5 5 H 1.08997 * 109.46853 * 330.40603 * 4 3 2 6 6 C 1.50699 * 109.47087 * 90.40668 * 4 3 2 7 7 O 1.21285 * 119.99913 * 5.00233 * 6 4 3 8 8 N 1.34776 * 120.00217 * 185.00047 * 6 4 3 9 9 C 1.46501 * 120.00182 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.88303 * 328.88188 * 9 8 6 11 11 C 1.55156 * 111.00480 * 205.00057 * 9 8 6 12 12 C 1.54320 * 102.94071 * 277.42660 * 11 9 8 13 13 N 1.47023 * 107.27570 * 337.80913 * 12 11 9 14 14 C 1.36936 * 125.64706 * 178.98584 * 13 12 11 15 15 H 1.08003 * 119.99359 * 179.97438 * 14 13 12 16 16 C 1.38800 * 120.00337 * 359.97184 * 14 13 12 17 17 N 1.31622 * 120.00213 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00046 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46858 * 60.00804 * 18 16 14 20 20 H 1.48501 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47543 * 300.00371 * 18 16 14 22 22 C 1.47422 * 108.69972 * 358.93783 * 13 12 11 23 23 C 1.53001 * 109.47276 * 210.40746 * 4 3 2 24 24 C 1.52997 * 117.50181 * 132.11570 * 23 4 3 25 25 C 1.52995 * 60.00001 * 252.50963 * 24 23 4 26 26 H 1.08998 * 109.47023 * 60.00081 * 1 2 3 27 27 H 1.08998 * 109.47555 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47396 * 300.00241 * 1 2 3 29 29 H 1.08996 * 109.47256 * 239.99350 * 2 1 3 30 30 H 1.09005 * 109.46640 * 119.99881 * 2 1 3 31 31 H 0.96998 * 119.99642 * 0.02562 * 8 6 4 32 32 H 1.09004 * 110.71963 * 35.79321 * 11 9 8 33 33 H 1.08997 * 110.71930 * 158.88899 * 11 9 8 34 34 H 1.09004 * 109.88183 * 97.22544 * 12 11 9 35 35 H 1.09003 * 109.88211 * 218.23234 * 12 11 9 36 36 H 0.97005 * 119.99861 * 179.97438 * 17 16 14 37 37 H 1.08991 * 110.36733 * 265.29103 * 22 13 12 38 38 H 1.09002 * 110.36421 * 142.96582 * 22 13 12 39 39 H 1.09004 * 115.54909 * 277.82302 * 23 4 3 40 40 H 1.09002 * 117.49484 * 359.97438 * 24 23 4 41 41 H 1.09004 * 117.49862 * 145.01708 * 24 23 4 42 42 H 1.08996 * 117.49985 * 252.50711 * 25 24 23 43 43 H 1.09004 * 117.51976 * 107.48274 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4279 1.4611 -0.0905 5 1 3.8922 0.5878 0.3676 6 6 3.8340 1.5440 -1.5394 7 8 2.9859 1.6005 -2.4045 8 7 5.1395 1.5554 -1.8737 9 6 5.5343 1.6354 -3.2823 10 1 4.7961 1.1503 -3.9208 11 6 6.9445 1.0261 -3.5001 12 6 7.8858 2.1853 -3.1106 13 7 7.1186 3.4328 -3.2394 14 6 7.5876 4.6900 -2.9661 15 1 6.9423 5.5466 -3.0935 16 6 8.8923 4.8634 -2.5254 17 7 9.6790 3.8195 -2.3705 18 14 9.5323 6.5785 -2.1532 19 1 8.7073 7.1931 -1.0823 20 1 10.9448 6.4928 -1.7029 21 1 9.4539 7.4130 -3.3790 22 6 5.7611 3.1062 -3.7127 23 6 3.8859 2.7247 0.6407 24 6 5.0579 2.5915 1.6151 25 6 3.6388 2.7970 2.1488 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 5.8178 1.5098 -1.1818 32 1 7.0988 0.1676 -2.8465 33 1 7.0861 0.7449 -4.5437 34 1 8.2206 2.0607 -2.0807 35 1 8.7458 2.2054 -3.7800 36 1 10.5909 3.9408 -2.0628 37 1 5.7055 3.1969 -4.7974 38 1 5.0271 3.7577 -3.2384 39 1 3.8062 3.6515 0.0726 40 1 5.5023 1.6035 1.7357 41 1 5.7496 3.4308 1.6881 42 1 3.3969 3.7715 2.5730 43 1 3.1496 1.9446 2.6202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567890694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -52.531167 kcal Electronic energy + Delta-G solvation = -23240.981509 eV Core-core repulsion = 19901.036377 eV Total energy + Delta-G solvation = -3339.945132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32561 -39.52814 -38.36080 -37.48695 -35.37084 -33.63463 -32.30078 -31.07186 -29.53008 -28.21313 -26.34671 -23.91197 -23.17339 -22.78912 -22.01366 -21.62474 -21.16469 -19.08445 -18.60992 -17.98585 -17.17902 -16.66770 -16.61645 -16.12147 -16.01390 -15.70434 -15.22624 -15.08444 -14.61880 -14.06753 -13.95895 -13.84138 -13.56896 -13.37349 -12.90580 -12.89433 -12.79550 -12.41585 -12.39058 -12.30482 -12.13992 -12.06633 -12.00761 -11.81092 -11.64073 -11.58560 -11.34360 -11.10387 -10.70591 -10.26708 -10.06750 -8.85483 -7.84008 -5.18084 1.46274 1.48114 1.51304 1.54629 2.06483 2.45755 2.49772 3.15978 3.34702 3.54786 3.66751 3.76083 3.82746 3.83484 4.01605 4.07536 4.16996 4.19666 4.29398 4.31248 4.47709 4.54453 4.67442 4.73644 4.79615 4.84081 4.87935 4.97540 5.01323 5.03083 5.04581 5.14064 5.26004 5.26804 5.44471 5.56259 5.68228 5.77895 6.07939 6.20812 6.58821 7.12973 7.22075 7.77771 8.42318 9.25543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.004835 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.957693 B = 5789.841249 C = 6609.334201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.374 6.374 4 C 0.119 3.881 5 H 0.114 0.886 6 C 0.491 3.509 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.139 3.861 10 H 0.099 0.901 11 C -0.133 4.133 12 C 0.185 3.815 13 N -0.618 5.618 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.054 4.054 17 N -0.943 5.943 18 Si 0.972 3.028 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.123 3.877 23 C -0.175 4.175 24 C -0.160 4.160 25 C -0.143 4.143 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.409 0.591 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.009 0.991 36 H 0.248 0.752 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -10.662 9.138 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.292 6.292 4 C 0.058 3.942 5 H 0.131 0.869 6 C 0.277 3.723 7 O -0.454 6.454 8 N -0.345 5.345 9 C 0.033 3.967 10 H 0.117 0.883 11 C -0.172 4.172 12 C 0.060 3.940 13 N -0.345 5.345 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.248 4.248 17 N -0.592 5.592 18 Si 0.801 3.199 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.003 4.003 23 C -0.194 4.194 24 C -0.197 4.197 25 C -0.180 4.180 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.244 0.756 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.342 -10.379 8.603 18.278 hybrid contribution 1.110 1.173 -0.086 1.617 sum -11.233 -9.206 8.517 16.836 Atomic orbital electron populations 1.21725 0.92571 1.03448 1.02539 1.22799 0.96870 0.82666 1.00591 1.88001 1.19083 1.28360 1.93716 1.21420 0.83563 0.99402 0.89858 0.86891 1.21807 0.82353 0.75386 0.92719 1.90651 1.51379 1.51147 1.52255 1.45815 1.07062 1.72975 1.08655 1.21956 0.96737 0.95324 0.82705 0.88294 1.23082 0.92642 0.98262 1.03165 1.20952 0.91721 0.83258 0.98048 1.44663 1.08827 1.02980 1.78034 1.19269 0.95898 0.84361 1.37702 0.91228 1.25464 0.96562 1.00759 1.01999 1.70130 1.06984 1.28910 1.53188 0.85261 0.76991 0.79751 0.77945 1.20536 1.21621 1.20955 1.22025 0.86836 0.95095 0.96377 1.21936 1.06679 0.96968 0.93809 1.23147 0.91256 1.04581 1.00724 1.22943 0.98133 1.04407 0.92486 0.93511 0.88781 0.91374 0.94307 0.90738 0.75589 0.88615 0.89242 0.95823 0.97269 0.94283 0.95354 0.95851 0.89871 0.86441 0.88815 0.88022 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 0.97 6.43 71.98 0.46 1.44 16 3 O -0.37 -10.35 9.48 -129.99 -1.23 -11.59 16 4 C 0.12 3.10 2.69 29.85 0.08 3.18 16 5 H 0.11 2.19 7.60 -2.39 -0.02 2.17 16 6 C 0.49 16.33 7.13 87.66 0.63 16.95 16 7 O -0.57 -23.48 16.15 15.95 0.26 -23.22 16 8 N -0.69 -22.45 5.15 -435.96 -2.24 -24.69 16 9 C 0.14 4.89 3.43 46.38 0.16 5.05 16 10 H 0.10 3.37 7.54 -2.39 -0.02 3.35 16 11 C -0.13 -4.46 6.55 31.78 0.21 -4.25 16 12 C 0.18 8.57 5.36 86.73 0.47 9.04 16 13 N -0.62 -31.38 3.39 -692.00 -2.35 -33.73 16 14 C -0.24 -13.68 10.28 84.03 0.86 -12.82 16 15 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 16 C -0.05 -3.03 5.49 84.86 0.47 -2.56 16 17 N -0.94 -54.55 10.31 21.65 0.22 -54.33 16 18 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 C 0.12 5.37 6.93 86.86 0.60 5.98 16 23 C -0.17 -4.54 5.31 -10.80 -0.06 -4.60 16 24 C -0.16 -3.42 10.18 30.59 0.31 -3.11 16 25 C -0.14 -2.80 10.21 30.59 0.31 -2.49 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.41 12.35 8.67 -92.71 -0.80 11.54 16 32 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16 35 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 36 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 2.67 8.13 -2.39 -0.02 2.65 16 40 H 0.12 2.00 8.07 -2.39 -0.02 1.98 16 41 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 43 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -70.16 354.37 2.10 -68.06 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.18 Total: 22.11 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.24 Total: 9.97 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.37 Total: -112.75 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.98 Total: -34.81 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.16 2.10 -68.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567890694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.526 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds