Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47217 * 2 1 4 4 C 1.50700 * 109.47208 * 120.00348 * 2 1 3 5 5 H 1.08004 * 119.99899 * 120.00143 * 4 2 1 6 6 C 1.37878 * 120.00024 * 299.99989 * 4 2 1 7 7 N 1.31515 * 120.00132 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00119 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46894 * 89.99863 * 8 6 4 10 10 H 1.48498 * 109.47461 * 210.00129 * 8 6 4 11 11 H 1.48508 * 109.47243 * 330.00282 * 8 6 4 12 12 N 1.46504 * 109.46973 * 240.00412 * 2 1 3 13 13 C 1.46505 * 119.99904 * 293.72597 * 12 2 1 14 14 C 1.34777 * 120.00053 * 114.00960 * 12 2 1 15 15 O 1.21273 * 119.99705 * 184.41293 * 14 12 2 16 16 C 1.50699 * 120.00001 * 4.41196 * 14 12 2 17 17 C 1.53972 * 106.07782 * 57.00013 * 16 14 12 18 18 N 1.49177 * 102.85378 * 83.03006 * 17 16 14 19 19 C 1.48666 * 103.68988 * 42.29921 * 18 17 16 20 20 C 1.51752 * 106.37371 * 169.60751 * 16 14 12 21 21 H 1.09001 * 109.73498 * 11.46364 * 20 16 14 22 22 C 1.51773 * 115.30992 * 135.85863 * 20 16 14 23 23 C 1.52365 * 112.34002 * 329.01368 * 22 20 16 24 24 O 1.43412 * 107.77184 * 56.69201 * 23 22 20 25 25 C 1.40751 * 111.76074 * 289.92645 * 24 23 22 26 26 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47225 * 299.99703 * 1 2 3 28 28 H 1.08992 * 109.47346 * 60.00104 * 1 2 3 29 29 H 0.96999 * 120.00169 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46619 * 85.28468 * 13 12 2 31 31 H 1.08996 * 109.46849 * 205.28382 * 13 12 2 32 32 H 1.08996 * 109.47094 * 325.28979 * 13 12 2 33 33 H 1.09000 * 110.73428 * 201.36981 * 17 16 14 34 34 H 1.08994 * 110.73683 * 324.69051 * 17 16 14 35 35 H 1.00900 * 110.99922 * 283.05119 * 18 17 16 36 36 H 1.09007 * 110.36281 * 80.18146 * 19 18 17 37 37 H 1.09004 * 110.36342 * 202.38556 * 19 18 17 38 38 H 1.09001 * 108.90822 * 89.74659 * 22 20 16 39 39 H 1.09001 * 108.90904 * 208.27874 * 22 20 16 40 40 H 1.09003 * 109.80079 * 176.26095 * 23 22 20 41 41 H 1.09004 * 109.80155 * 297.12092 * 23 22 20 42 42 H 1.08999 * 108.31171 * 293.64879 * 25 24 23 43 43 H 1.08997 * 108.08185 * 176.23859 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2797 2.6543 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.7811 -2.1269 -1.3610 14 6 2.6907 -0.0056 -2.1425 15 8 3.0249 -0.5585 -3.1688 16 6 3.0270 1.4472 -1.9251 17 6 3.8366 1.5063 -0.6167 18 7 5.2193 1.1729 -1.0667 19 6 5.3730 1.9411 -2.3301 20 6 3.9904 1.8335 -3.0322 21 1 4.0204 1.0461 -3.7853 22 6 3.7108 3.1677 -3.6994 23 6 2.2255 3.5070 -3.7158 24 8 1.7568 3.4867 -2.3605 25 6 1.7244 2.1797 -1.8392 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9040 -0.5277 4.4375 30 1 0.7978 -2.2841 -1.8044 31 1 2.5456 -2.5488 -2.0134 32 1 1.8233 -2.6160 -0.3879 33 1 3.8016 2.5071 -0.1862 34 1 3.4734 0.7656 0.0956 35 1 5.3168 0.1823 -1.2316 36 1 5.6087 2.9832 -2.1141 37 1 6.1513 1.4978 -2.9513 38 1 4.2459 3.9505 -3.1618 39 1 4.0765 3.1329 -4.7256 40 1 2.0780 4.4990 -4.1426 41 1 1.6841 2.7666 -4.3048 42 1 0.9684 1.6129 -2.3826 43 1 1.4261 2.2403 -0.7925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = -40.522773 kcal Electronic energy + Delta-G solvation = -25201.327674 eV Core-core repulsion = 21861.903265 eV Total energy + Delta-G solvation = -3339.424409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50343 -38.42808 -36.78552 -36.16557 -32.77793 -32.53191 -31.34429 -30.24629 -27.85807 -26.18059 -25.51898 -24.46127 -23.43149 -22.17626 -21.50255 -19.51016 -18.34307 -17.18636 -16.67575 -16.31426 -16.20368 -15.53081 -15.26773 -14.99790 -14.59168 -14.15011 -13.88057 -13.44441 -13.31231 -13.06649 -12.72790 -12.63163 -12.35227 -12.20347 -12.12509 -11.80282 -11.74736 -11.33330 -11.07065 -10.98643 -10.91369 -10.78063 -10.58923 -10.15860 -10.03089 -9.85020 -9.51573 -9.41545 -9.19177 -8.81201 -8.39114 -7.93546 -6.33043 -4.37357 3.02504 3.09990 3.16799 3.24680 3.56596 4.05129 4.15654 4.42903 4.55256 4.78258 4.92292 4.95953 4.99234 5.14249 5.27775 5.37204 5.51578 5.58151 5.65224 5.72009 5.86965 5.90323 5.97079 5.98886 6.03262 6.06468 6.09973 6.14433 6.20621 6.25332 6.41875 6.45176 6.50766 6.58919 6.78433 6.91149 7.08845 7.22028 7.39334 7.57937 7.90635 8.32589 8.59997 8.71507 9.25082 10.78645 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.007760 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.006326 B = 3607.389085 C = 3849.346900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.207 3.793 3 H 0.067 0.933 4 C -0.539 4.539 5 H 0.085 0.915 6 C 0.083 3.917 7 N -0.882 5.882 8 Si 0.878 3.122 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.264 1.264 12 N -0.580 5.580 13 C 0.089 3.911 14 C 0.509 3.491 15 O -0.562 6.562 16 C -0.133 4.133 17 C 0.027 3.973 18 N -0.662 5.662 19 C 0.044 3.956 20 C -0.116 4.116 21 H 0.107 0.893 22 C -0.139 4.139 23 C 0.052 3.948 24 O -0.365 6.365 25 C 0.075 3.925 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.269 0.731 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.338 0.662 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 6.497 -11.043 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.084 0.916 4 C -0.576 4.576 5 H 0.103 0.897 6 C -0.122 4.122 7 N -0.518 5.518 8 Si 0.707 3.293 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.189 1.189 12 N -0.309 5.309 13 C -0.054 4.054 14 C 0.296 3.704 15 O -0.443 6.443 16 C -0.138 4.138 17 C -0.102 4.102 18 N -0.287 5.287 19 C -0.086 4.086 20 C -0.136 4.136 21 H 0.125 0.875 22 C -0.177 4.177 23 C -0.025 4.025 24 O -0.283 6.283 25 C -0.003 4.003 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.698 6.760 -10.738 12.708 hybrid contribution -1.272 -0.058 -0.487 1.364 sum -0.574 6.702 -11.225 13.086 Atomic orbital electron populations 1.22565 0.98861 1.01881 0.99362 1.19960 0.90746 0.94917 0.83911 0.91584 1.21058 1.33513 1.15039 0.88036 0.89705 1.24873 0.95229 0.96512 0.95618 1.69853 1.44026 1.39710 0.98164 0.87020 0.80879 0.83527 0.77829 1.20155 1.21737 1.18884 1.47849 1.53362 1.09288 1.20447 1.21544 0.99943 0.81057 1.02828 1.20550 0.77825 0.88880 0.83161 1.90549 1.55785 1.70462 1.27524 1.21503 0.98420 0.93967 0.99933 1.23990 0.86266 1.05029 0.94960 1.63446 1.26404 1.12298 1.26558 1.23526 0.95298 0.99690 0.90102 1.21933 0.95089 0.98895 0.97646 0.87523 1.21753 0.97535 0.97186 1.01217 1.22597 0.93812 1.01883 0.84176 1.87921 1.86097 1.26790 1.27444 1.21774 0.93535 0.83881 1.01124 0.92076 0.92886 0.94723 0.92071 0.93886 0.91818 0.89665 0.89640 0.85009 0.84646 0.90328 0.91252 0.91025 0.91111 0.88797 0.92963 0.93560 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 8.51 37.16 0.32 -2.97 16 2 C 0.21 4.27 0.38 -69.08 -0.03 4.24 16 3 H 0.07 1.37 1.51 -51.93 -0.08 1.29 16 4 C -0.54 -13.19 7.51 -34.44 -0.26 -13.45 16 5 H 0.09 2.30 7.06 -52.48 -0.37 1.92 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.88 -24.53 13.96 55.43 0.77 -23.76 16 8 Si 0.88 19.58 24.37 -169.99 -4.14 15.44 16 9 H -0.27 -6.01 6.87 56.52 0.39 -5.62 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.26 -5.48 6.37 56.52 0.36 -5.12 16 12 N -0.58 -11.35 2.66 -175.26 -0.47 -11.82 16 13 C 0.09 1.62 9.72 59.85 0.58 2.20 16 14 C 0.51 9.77 5.43 -10.99 -0.06 9.71 16 15 O -0.56 -11.71 14.42 5.56 0.08 -11.63 16 16 C -0.13 -2.28 0.76 -157.42 -0.12 -2.40 16 17 C 0.03 0.49 5.21 -2.05 -0.01 0.48 16 18 N -0.66 -11.25 7.62 -108.71 -0.83 -12.08 16 19 C 0.04 0.63 6.95 -1.55 -0.01 0.62 16 20 C -0.12 -1.75 2.86 -90.58 -0.26 -2.01 16 21 H 0.11 1.79 5.99 -51.93 -0.31 1.48 16 22 C -0.14 -1.73 5.59 -27.68 -0.15 -1.88 16 23 C 0.05 0.66 6.85 36.83 0.25 0.92 16 24 O -0.36 -5.80 10.84 -34.47 -0.37 -6.18 16 25 C 0.07 1.27 4.40 35.52 0.16 1.42 16 26 H 0.06 1.16 7.83 -51.93 -0.41 0.76 16 27 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.14 7.34 -51.93 -0.38 0.75 16 32 H 0.08 1.61 6.52 -51.93 -0.34 1.27 16 33 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 34 H 0.13 2.75 4.09 -51.93 -0.21 2.53 16 35 H 0.34 5.93 8.66 -39.29 -0.34 5.59 16 36 H 0.08 1.06 7.16 -51.93 -0.37 0.69 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.86 7.10 -51.93 -0.37 0.49 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.05 0.79 7.12 -51.93 -0.37 0.42 16 43 H 0.11 1.99 5.35 -51.93 -0.28 1.71 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -27.57 307.38 -6.12 -33.69 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.11 Total: 12.78 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 0.31 Total: -1.08 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.52 Total: -47.66 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.29 Total: -17.80 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.14 Total: 15.44 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.57 -6.12 -33.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.830 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds