Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47103 * 2 1 4 4 C 1.50703 * 109.47328 * 239.99781 * 2 1 3 5 5 H 1.07994 * 120.00011 * 240.00202 * 4 2 1 6 6 C 1.37876 * 119.99816 * 59.99718 * 4 2 1 7 7 N 1.31509 * 119.99831 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99995 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46794 * 269.99357 * 8 6 4 10 10 H 1.48507 * 109.47401 * 29.99500 * 8 6 4 11 11 H 1.48499 * 109.47549 * 149.99782 * 8 6 4 12 12 N 1.46503 * 109.47228 * 119.99630 * 2 1 3 13 13 C 1.46505 * 119.99466 * 53.81144 * 12 2 1 14 14 C 1.34768 * 120.00167 * 233.81156 * 12 2 1 15 15 O 1.21286 * 119.99934 * 185.10134 * 14 12 2 16 16 C 1.50702 * 120.00397 * 5.09827 * 14 12 2 17 17 C 1.53971 * 106.07188 * 57.30858 * 16 14 12 18 18 N 1.49178 * 102.86135 * 83.03135 * 17 16 14 19 19 C 1.48671 * 103.68765 * 42.29646 * 18 17 16 20 20 C 1.51748 * 106.37130 * 169.91090 * 16 14 12 21 21 H 1.09001 * 109.73848 * 11.46705 * 20 16 14 22 22 C 1.51778 * 115.30441 * 135.86520 * 20 16 14 23 23 C 1.52359 * 112.34360 * 329.00639 * 22 20 16 24 24 O 1.43422 * 107.77065 * 56.69102 * 23 22 20 25 25 C 1.40750 * 111.76225 * 289.93543 * 24 23 22 26 26 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46878 * 300.00126 * 1 2 3 28 28 H 1.08996 * 109.47198 * 59.99970 * 1 2 3 29 29 H 0.97006 * 120.00089 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47298 * 95.05087 * 13 12 2 31 31 H 1.09002 * 109.47029 * 215.04061 * 13 12 2 32 32 H 1.08994 * 109.47422 * 335.05106 * 13 12 2 33 33 H 1.08999 * 110.73364 * 201.37356 * 17 16 14 34 34 H 1.09001 * 110.73660 * 324.68396 * 17 16 14 35 35 H 1.00897 * 110.99540 * 283.04985 * 18 17 16 36 36 H 1.08996 * 110.36816 * 80.17863 * 19 18 17 37 37 H 1.08998 * 110.36414 * 202.39349 * 19 18 17 38 38 H 1.09004 * 108.91082 * 89.74772 * 22 20 16 39 39 H 1.09003 * 108.90534 * 208.27081 * 22 20 16 40 40 H 1.08996 * 109.80538 * 176.25861 * 23 22 20 41 41 H 1.09003 * 109.80222 * 297.13115 * 23 22 20 42 42 H 1.09002 * 108.30686 * 293.64539 * 25 24 23 43 43 H 1.08995 * 108.08096 * 176.24080 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 2.1381 -0.8591 -3.5564 8 14 0.6258 1.2796 -2.6541 9 1 -0.8020 0.8742 -2.6994 10 1 0.8490 2.1772 -1.4922 11 1 0.9771 1.9952 -3.9070 12 7 2.0184 -0.6905 1.1962 13 6 1.5562 -2.0475 1.4986 14 6 2.8927 -0.0775 2.0184 15 8 3.3680 -0.6811 2.9570 16 6 3.2799 1.3578 1.7717 17 6 1.9668 2.1617 1.7839 18 7 1.7327 2.3934 3.2389 19 6 3.0804 2.7419 3.7609 20 6 4.0580 1.8072 2.9947 21 1 4.3023 0.9436 3.6133 22 6 5.3186 2.6014 2.7058 23 6 5.9728 2.1921 1.3920 24 8 4.9996 2.3503 0.3505 25 6 3.9731 1.3920 0.4455 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9040 -0.5276 -4.4375 30 1 2.2718 -2.7707 1.1074 31 1 1.4697 -2.1697 2.5783 32 1 0.5835 -2.2118 1.0351 33 1 2.0888 3.1081 1.2571 34 1 1.1538 1.5795 1.3501 35 1 1.3763 1.5614 3.6847 36 1 3.3106 3.7862 3.5500 37 1 3.1329 2.5516 4.8328 38 1 5.0660 3.6608 2.6595 39 1 6.0287 2.4447 3.5178 40 1 6.8334 2.8307 1.1933 41 1 6.2896 1.1505 1.4461 42 1 4.4029 0.4094 0.2506 43 1 3.2364 1.6076 -0.3283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -38.498368 kcal Electronic energy + Delta-G solvation = -25218.289595 eV Core-core repulsion = 21878.952971 eV Total energy + Delta-G solvation = -3339.336624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49341 -38.34897 -36.77669 -36.19039 -32.75150 -32.51387 -31.32909 -30.28759 -27.83961 -26.36623 -25.40477 -24.31870 -23.45073 -22.21177 -21.54063 -19.46032 -18.32254 -17.22283 -16.74828 -16.29456 -16.02863 -15.49961 -15.27184 -14.94004 -14.68095 -14.06397 -13.79726 -13.51437 -13.40092 -13.21382 -12.73266 -12.56798 -12.48174 -12.15556 -12.08062 -11.70043 -11.60411 -11.41993 -11.21832 -10.97020 -10.90159 -10.72164 -10.61304 -10.18837 -9.99279 -9.85126 -9.45354 -9.33354 -9.23001 -8.78467 -8.56612 -7.92499 -6.30089 -4.33568 3.04224 3.10054 3.17103 3.25207 3.57497 4.16850 4.22455 4.28733 4.57605 4.79707 4.95547 4.97454 4.98556 5.18672 5.31725 5.45690 5.47277 5.60431 5.70088 5.76848 5.86296 5.89684 5.94496 5.98796 6.02437 6.05191 6.07116 6.10180 6.16594 6.19887 6.35118 6.38627 6.44800 6.57941 6.67696 6.76868 7.15417 7.34159 7.39790 7.43380 7.93737 8.33411 8.61841 8.75520 9.28154 10.82322 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.008072 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.048812 B = 3467.833958 C = 3843.762604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.207 3.793 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.885 5.885 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.290 1.290 12 N -0.582 5.582 13 C 0.096 3.904 14 C 0.511 3.489 15 O -0.562 6.562 16 C -0.130 4.130 17 C 0.033 3.967 18 N -0.666 5.666 19 C 0.045 3.955 20 C -0.115 4.115 21 H 0.108 0.892 22 C -0.138 4.138 23 C 0.051 3.949 24 O -0.364 6.364 25 C 0.076 3.924 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.268 0.732 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.336 0.664 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 6.262 10.581 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.084 0.916 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.705 3.295 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.217 1.217 12 N -0.311 5.311 13 C -0.047 4.047 14 C 0.298 3.702 15 O -0.443 6.443 16 C -0.135 4.135 17 C -0.096 4.096 18 N -0.291 5.291 19 C -0.085 4.085 20 C -0.135 4.135 21 H 0.126 0.874 22 C -0.176 4.176 23 C -0.026 4.026 24 O -0.282 6.282 25 C -0.001 4.001 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.144 6.753 10.675 12.683 hybrid contribution -0.172 -0.511 -0.264 0.600 sum 0.972 6.242 10.411 12.177 Atomic orbital electron populations 1.22580 0.98717 1.01948 0.99606 1.19961 0.90895 0.94806 0.83823 0.91586 1.21121 1.33304 1.14841 0.88083 0.90112 1.24878 0.95383 0.96514 0.95637 1.69855 1.44325 1.39799 0.98122 0.87046 0.80916 0.83629 0.77891 1.20140 1.18840 1.21732 1.47839 1.43034 1.15741 1.24461 1.21453 1.00085 0.83316 0.99861 1.20509 0.78939 0.88765 0.82022 1.90555 1.54649 1.66815 1.32247 1.21492 0.99107 0.94515 0.98385 1.23803 0.95003 1.00183 0.90625 1.63531 1.22964 1.38950 1.03656 1.23523 0.87257 0.99140 0.98609 1.21921 0.95587 1.00442 0.95540 0.87426 1.21750 0.97005 1.00449 0.98435 1.22571 0.91693 1.01028 0.87281 1.87931 1.35246 1.55332 1.49711 1.21741 0.90819 0.93398 0.94155 0.91817 0.94324 0.92711 0.92149 0.93045 0.92427 0.90741 0.89101 0.87954 0.84921 0.90144 0.91098 0.91163 0.91175 0.88918 0.92880 0.92359 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 8.14 37.16 0.30 -2.95 16 2 C 0.21 4.29 0.37 -69.08 -0.03 4.26 16 3 H 0.07 1.37 1.50 -51.93 -0.08 1.29 16 4 C -0.54 -13.41 8.77 -34.44 -0.30 -13.71 16 5 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.88 -25.02 13.96 55.43 0.77 -24.25 16 8 Si 0.88 19.65 24.37 -169.99 -4.14 15.50 16 9 H -0.27 -6.01 6.87 56.52 0.39 -5.62 16 10 H -0.26 -5.47 6.53 56.52 0.37 -5.10 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.58 -11.38 2.65 -175.26 -0.46 -11.85 16 13 C 0.10 1.71 9.82 59.85 0.59 2.30 16 14 C 0.51 9.88 5.43 -10.99 -0.06 9.82 16 15 O -0.56 -11.80 14.59 5.55 0.08 -11.72 16 16 C -0.13 -2.24 0.76 -157.43 -0.12 -2.36 16 17 C 0.03 0.55 5.23 -2.05 -0.01 0.53 16 18 N -0.67 -9.84 7.62 -108.71 -0.83 -10.66 16 19 C 0.04 0.60 6.95 -1.54 -0.01 0.58 16 20 C -0.11 -1.73 2.86 -90.58 -0.26 -1.98 16 21 H 0.11 1.81 5.99 -51.93 -0.31 1.50 16 22 C -0.14 -1.78 5.59 -27.68 -0.15 -1.93 16 23 C 0.05 0.72 6.85 36.83 0.25 0.97 16 24 O -0.36 -6.45 10.84 -34.47 -0.37 -6.83 16 25 C 0.08 1.45 4.56 35.52 0.16 1.61 16 26 H 0.06 1.17 6.46 -51.93 -0.34 0.84 16 27 H 0.04 0.64 7.06 -51.93 -0.37 0.27 16 28 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 32 H 0.07 1.23 6.11 -51.93 -0.32 0.92 16 33 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 34 H 0.10 1.77 3.59 -51.93 -0.19 1.58 16 35 H 0.34 4.97 8.66 -39.29 -0.34 4.63 16 36 H 0.08 1.01 7.16 -51.93 -0.37 0.64 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.85 7.10 -51.93 -0.37 0.48 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.78 8.04 -51.93 -0.42 0.36 16 42 H 0.06 1.23 7.53 -51.93 -0.39 0.83 16 43 H 0.12 2.39 5.47 -51.93 -0.28 2.11 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -28.30 307.95 -6.10 -34.40 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.05 Total: 11.62 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.27 Total: -0.85 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.52 Total: -46.76 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.29 Total: -18.55 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.14 Total: 15.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.30 -6.10 -34.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.097 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds