Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.69753 * 2 1 4 4 C 1.53396 * 109.67034 * 239.48761 * 2 1 3 5 5 N 1.46854 * 108.77429 * 289.68724 * 4 2 1 6 6 C 1.34780 * 120.37512 * 122.40697 * 5 4 2 7 7 O 1.21274 * 120.00374 * 355.11041 * 6 5 4 8 8 C 1.50707 * 119.99760 * 175.10360 * 6 5 4 9 9 H 1.08997 * 109.46578 * 42.14482 * 8 6 5 10 10 N 1.46893 * 109.46981 * 162.14453 * 8 6 5 11 11 C 1.52995 * 109.47117 * 282.14410 * 8 6 5 12 12 C 1.52996 * 109.47038 * 174.51247 * 11 8 6 13 13 C 1.50705 * 109.47308 * 179.97438 * 12 11 8 14 14 H 1.07995 * 119.99889 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99910 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00401 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99925 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46991 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47397 * 119.99682 * 17 15 13 20 20 H 1.48495 * 109.47147 * 240.00050 * 17 15 13 21 21 C 1.46852 * 119.24151 * 302.38426 * 5 4 2 22 22 C 1.53393 * 108.77525 * 57.62278 * 21 5 4 23 23 H 1.08993 * 109.67536 * 70.31002 * 22 21 5 24 24 C 1.53003 * 109.67228 * 190.84359 * 22 21 5 25 25 C 1.51294 * 108.42198 * 310.56991 * 22 21 5 26 26 O 1.20760 * 120.80990 * 232.68108 * 25 22 21 27 27 H 1.09001 * 109.47351 * 304.26862 * 1 2 3 28 28 H 1.09001 * 109.47303 * 64.27195 * 1 2 3 29 29 H 1.08997 * 109.47405 * 184.26838 * 1 2 3 30 30 H 1.09007 * 109.58220 * 169.90401 * 4 2 1 31 31 H 1.09001 * 109.70729 * 49.55115 * 4 2 1 32 32 H 1.00903 * 111.00807 * 59.99986 * 10 8 6 33 33 H 1.00902 * 111.00366 * 183.95917 * 10 8 6 34 34 H 1.08997 * 109.47486 * 294.50851 * 11 8 6 35 35 H 1.09001 * 109.47349 * 54.51378 * 11 8 6 36 36 H 1.09003 * 109.47325 * 300.00108 * 12 11 8 37 37 H 1.08997 * 109.47387 * 59.99738 * 12 11 8 38 38 H 0.97000 * 120.00290 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.58616 * 297.83062 * 21 5 4 40 40 H 1.09001 * 109.58536 * 177.41167 * 21 5 4 41 41 H 1.09004 * 109.46653 * 178.96359 * 24 22 21 42 42 H 1.08997 * 109.46945 * 298.96179 * 24 22 21 43 43 H 1.08998 * 109.47432 * 58.96412 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0464 -0.7334 -1.2444 5 7 1.7644 -2.1672 -1.0990 6 6 1.0254 -2.8136 -2.0224 7 8 0.5151 -2.1950 -2.9322 8 6 0.8332 -4.3051 -1.9244 9 1 0.6485 -4.5801 -0.8860 10 7 -0.3145 -4.7061 -2.7488 11 6 2.0929 -5.0155 -2.4239 12 6 1.9523 -6.5221 -2.1977 13 6 3.1928 -7.2220 -2.6903 14 1 4.0008 -6.6494 -3.1211 15 6 3.2965 -8.5932 -2.5899 16 7 2.3133 -9.2903 -2.0639 17 14 4.8344 -9.4606 -3.1997 18 1 5.7855 -8.4580 -3.7435 19 1 5.4720 -10.1883 -2.0732 20 1 4.4682 -10.4249 -4.2679 21 6 2.2972 -2.8888 0.0637 22 6 1.7872 -2.2109 1.3417 23 1 0.7186 -2.3945 1.4531 24 6 2.5355 -2.7683 2.5543 25 6 2.0394 -0.7235 1.2272 26 8 2.6284 -0.1273 2.0967 27 1 -0.3634 0.5786 0.8493 28 1 -0.3634 0.4461 -0.9258 29 1 -0.3634 -1.0248 0.0765 30 1 3.1214 -0.5801 -1.3390 31 1 1.5432 -0.3501 -2.1321 32 1 -0.1676 -4.4618 -3.7167 33 1 -0.5042 -5.6922 -2.6496 34 1 2.2234 -4.8185 -3.4879 35 1 2.9599 -4.6453 -1.8768 36 1 1.8217 -6.7192 -1.1336 37 1 1.0853 -6.8923 -2.7448 38 1 2.3861 -10.2550 -1.9936 39 1 3.3866 -2.8594 0.0442 40 1 1.9572 -3.9241 0.0386 41 1 2.1836 -2.2713 3.4583 42 1 2.3517 -3.8397 2.6336 43 1 3.6043 -2.5909 2.4347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579429153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -89.769734 kcal Electronic energy + Delta-G solvation = -23266.496971 eV Core-core repulsion = 19924.937054 eV Total energy + Delta-G solvation = -3341.559917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93084 -39.34877 -36.62537 -35.66888 -33.98058 -32.89341 -32.61511 -29.95017 -27.83970 -26.76747 -26.01777 -24.52612 -23.49969 -22.13582 -20.66855 -19.51406 -18.42740 -17.58317 -16.55664 -16.29257 -16.06720 -15.43278 -15.21436 -14.95983 -14.75613 -14.45535 -14.07488 -13.89062 -13.38719 -13.23792 -12.88384 -12.74801 -12.60407 -12.36944 -12.31302 -12.16586 -11.84399 -11.72359 -11.60338 -11.43805 -11.19582 -11.11069 -10.97008 -10.69810 -10.05256 -9.96930 -9.58737 -9.30688 -9.22742 -8.78236 -8.48542 -8.25409 -6.12894 -4.16086 1.69785 2.79163 2.85001 3.23404 3.31902 3.35394 3.73147 4.34001 4.37110 4.43870 4.48964 4.72635 4.80209 4.89764 5.04003 5.10356 5.23675 5.27831 5.30935 5.39437 5.46218 5.50288 5.57930 5.62027 5.66829 5.69061 5.72915 5.77993 5.96725 6.02086 6.20928 6.36676 6.46545 6.80196 7.19649 7.28109 7.45631 7.50826 7.57051 7.83388 7.84745 8.25807 8.30092 8.90057 9.49402 10.97959 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.004316 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.073295 B = 6485.858540 C = 7205.375508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.153 4.153 3 H 0.103 0.897 4 C 0.120 3.880 5 N -0.618 5.618 6 C 0.531 3.469 7 O -0.532 6.532 8 C 0.073 3.927 9 H 0.098 0.902 10 N -0.830 5.830 11 C -0.139 4.139 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.114 3.886 22 C -0.157 4.157 23 H 0.110 0.890 24 C -0.139 4.139 25 C 0.371 3.629 26 O -0.451 6.451 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.346 0.654 33 H 0.355 0.645 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 15.034 6.260 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 H 0.121 0.879 4 C -0.003 4.003 5 N -0.353 5.353 6 C 0.320 3.680 7 O -0.407 6.407 8 C -0.042 4.042 9 H 0.116 0.884 10 N -0.362 5.362 11 C -0.179 4.179 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.176 4.176 23 H 0.128 0.872 24 C -0.197 4.197 25 C 0.245 3.755 26 O -0.323 6.323 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.730 16.003 6.700 17.562 hybrid contribution 1.572 -1.248 -0.755 2.144 sum -1.159 14.755 5.945 15.950 Atomic orbital electron populations 1.21681 0.91924 1.03016 1.02758 1.22358 0.98891 1.00958 0.95140 0.87909 1.21590 1.00689 0.80322 0.97728 1.48052 1.53708 1.09183 1.24348 1.20937 0.76120 0.90179 0.80795 1.90627 1.47443 1.68683 1.33919 1.21540 0.92985 0.89766 0.99945 0.88415 1.58752 1.39215 1.24239 1.14036 1.22418 0.94913 0.99926 1.00637 1.19103 0.97495 0.87393 0.97239 1.21201 1.02521 0.91901 1.40574 0.92675 1.24997 0.96385 0.97657 0.95161 1.69949 1.31692 1.06789 1.44709 0.86548 0.83263 0.79681 0.78601 1.19755 1.20921 1.20939 1.21913 0.99473 0.97335 0.82180 1.22294 1.03503 0.94274 0.97568 0.87204 1.21629 1.00542 1.01420 0.96107 1.24784 0.74318 0.90845 0.85536 1.90384 1.31602 1.70168 1.40189 0.92356 0.91018 0.91740 0.91016 0.87651 0.84122 0.83000 0.92606 0.92393 0.96334 0.96386 0.92903 0.90264 0.87316 0.91735 0.91080 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.04 37.16 0.34 -0.93 16 2 C -0.15 -1.47 3.20 -91.27 -0.29 -1.76 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.12 1.28 5.82 -3.64 -0.02 1.25 16 5 N -0.62 -7.56 2.64 -172.63 -0.46 -8.02 16 6 C 0.53 8.13 6.94 -10.98 -0.08 8.05 16 7 O -0.53 -9.56 15.62 5.56 0.09 -9.47 16 8 C 0.07 1.15 2.35 -68.87 -0.16 0.98 16 9 H 0.10 1.44 6.50 -51.93 -0.34 1.10 16 10 N -0.83 -13.46 8.92 -5.66 -0.05 -13.51 16 11 C -0.14 -2.57 4.55 -26.74 -0.12 -2.69 16 12 C 0.02 0.57 4.75 -27.88 -0.13 0.44 16 13 C -0.52 -13.88 9.11 -34.44 -0.31 -14.20 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.11 1.23 4.93 -3.65 -0.02 1.21 16 22 C -0.16 -1.53 2.86 -91.27 -0.26 -1.79 16 23 H 0.11 0.99 7.59 -51.93 -0.39 0.60 16 24 C -0.14 -1.31 8.58 37.16 0.32 -0.99 16 25 C 0.37 4.04 5.90 -28.45 -0.17 3.88 16 26 O -0.45 -6.11 16.86 6.00 0.10 -6.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.66 7.20 -51.93 -0.37 0.29 16 30 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.11 1.21 6.94 -51.93 -0.36 0.85 16 32 H 0.35 5.70 8.60 -39.29 -0.34 5.37 16 33 H 0.35 5.77 7.57 -39.29 -0.30 5.48 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.02 7.25 -51.93 -0.38 0.65 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.43 6.88 -51.93 -0.36 0.08 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.11 1.22 5.17 -51.93 -0.27 0.95 16 41 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -30.79 342.71 -7.31 -38.10 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.87 Total: 7.56 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.01 Total: -5.02 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.23 Total: -46.12 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.19 Total: -15.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -7.31 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579429153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.667 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds