Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47307 * 2 1 4 4 N 1.46898 * 109.47480 * 240.00372 * 2 1 3 5 5 C 1.46900 * 111.00393 * 72.13145 * 4 2 1 6 6 C 1.53041 * 109.46215 * 247.60448 * 5 4 2 7 7 C 1.53189 * 109.31516 * 178.60059 * 6 5 4 8 8 N 1.46926 * 108.76623 * 54.65011 * 7 6 5 9 9 C 1.36934 * 120.62831 * 126.40621 * 8 7 6 10 10 H 1.07997 * 120.00659 * 333.13512 * 9 8 7 11 11 C 1.38811 * 119.99763 * 153.13665 * 9 8 7 12 12 N 1.31619 * 120.00197 * 336.16138 * 11 9 8 13 13 Si 1.86803 * 120.00121 * 156.17256 * 11 9 8 14 14 H 1.48500 * 109.47094 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47432 * 119.99706 * 13 11 9 16 16 H 1.48507 * 109.46902 * 239.99652 * 13 11 9 17 17 C 1.46924 * 118.74110 * 306.38783 * 8 7 6 18 18 C 1.53037 * 109.46062 * 127.54436 * 5 4 2 19 19 C 1.52999 * 109.47377 * 119.99958 * 2 1 3 20 20 H 1.09001 * 115.55930 * 37.27504 * 19 2 1 21 21 C 1.53069 * 117.51432 * 251.57571 * 19 2 1 22 22 C 1.52987 * 59.98641 * 252.52199 * 21 19 2 23 23 H 1.09001 * 117.50134 * 252.50202 * 22 21 19 24 24 C 1.50703 * 117.50030 * 107.50107 * 22 21 19 25 25 O 1.20826 * 119.99845 * 337.57869 * 24 22 21 26 26 O 1.34225 * 119.99888 * 157.30277 * 24 22 21 27 27 H 1.08998 * 109.47325 * 300.92857 * 1 2 3 28 28 H 1.09006 * 109.47161 * 60.92901 * 1 2 3 29 29 H 1.08998 * 109.46692 * 180.92907 * 1 2 3 30 30 H 1.00902 * 110.99508 * 308.18183 * 4 2 1 31 31 H 1.08996 * 109.45780 * 7.57363 * 5 4 2 32 32 H 1.09003 * 109.49731 * 298.56521 * 6 5 4 33 33 H 1.08997 * 109.49994 * 58.65644 * 6 5 4 34 34 H 1.09005 * 109.59850 * 294.86522 * 7 6 5 35 35 H 1.08995 * 109.70471 * 174.50382 * 7 6 5 36 36 H 0.97000 * 120.00014 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.58672 * 293.82347 * 17 8 7 38 38 H 1.08995 * 109.58773 * 173.39051 * 17 8 7 39 39 H 1.08998 * 109.49907 * 301.33933 * 18 5 4 40 40 H 1.09003 * 109.49739 * 61.43858 * 18 5 4 41 41 H 1.09001 * 117.49294 * 145.03099 * 21 19 2 42 42 H 1.09005 * 117.53417 * 359.97438 * 21 19 2 43 43 H 0.96706 * 117.00041 * 180.27373 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.7986 0.1197 -2.4034 6 6 0.7528 -0.5588 -3.2911 7 6 0.4991 0.3080 -4.5284 8 7 1.7822 0.5652 -5.1965 9 6 1.9455 0.2818 -6.5262 10 1 1.3518 -0.4918 -6.9905 11 6 2.8742 0.9887 -7.2776 12 7 3.2510 2.1909 -6.8965 13 14 3.5890 0.2341 -8.8297 14 1 3.0066 -1.1160 -9.0373 15 1 3.2660 1.0974 -9.9940 16 1 5.0633 0.1209 -8.6914 17 6 2.8866 1.1325 -4.4109 18 6 3.1132 0.2565 -3.1747 19 6 2.0400 -0.7212 1.2492 20 1 1.4591 -1.5891 1.5613 21 6 2.6803 0.1324 2.3467 22 6 3.5533 -0.7674 1.4699 23 1 3.9680 -1.6660 1.9268 24 6 4.4274 -0.0991 0.4402 25 8 4.1524 1.0076 0.0409 26 8 5.5145 -0.7311 -0.0293 27 1 -0.3634 0.5282 0.8815 28 1 -0.3634 0.4994 -0.8982 29 1 -0.3633 -1.0275 0.0167 30 1 1.5912 -1.6012 -1.2926 31 1 1.4427 1.1085 -2.1141 32 1 1.1187 -1.5376 -3.6013 33 1 -0.1762 -0.6773 -2.7335 34 1 0.0486 1.2535 -4.2263 35 1 -0.1706 -0.2139 -5.2118 36 1 3.9002 2.6848 -7.4214 37 1 2.6307 2.1451 -4.0992 38 1 3.7930 1.1522 -5.0160 39 1 3.8645 0.7185 -2.5342 40 1 3.4568 -0.7300 -3.4860 41 1 2.5203 -0.1743 3.3804 42 1 2.7387 1.2079 2.1789 43 1 6.0466 -0.2607 -0.6857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593219685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = -49.330671 kcal Electronic energy + Delta-G solvation = -23564.450611 eV Core-core repulsion = 20224.644263 eV Total energy + Delta-G solvation = -3339.806348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40629 -38.45948 -37.26947 -35.65484 -34.83602 -32.36364 -30.50566 -29.68900 -28.06446 -25.41778 -24.78986 -23.35987 -22.10465 -21.21672 -20.98240 -20.11432 -18.99136 -17.89609 -16.82449 -16.37138 -15.73689 -15.11718 -14.83605 -14.66365 -14.43372 -13.74383 -13.70985 -13.41467 -13.11403 -12.93850 -12.77817 -12.25999 -12.21169 -12.14358 -11.74982 -11.41839 -11.25164 -11.16147 -10.98230 -10.75740 -10.66819 -10.61851 -10.37834 -10.20439 -10.11708 -10.06887 -9.91677 -9.58383 -9.35215 -8.41905 -7.99746 -6.64579 -5.75419 -3.12035 2.33295 3.13285 3.40653 3.49137 3.51829 3.64196 4.39328 4.45560 4.55321 4.74478 4.87139 5.08268 5.25553 5.30141 5.38252 5.42887 5.46528 5.52130 5.55578 5.67604 5.78607 5.85744 5.90200 5.96173 6.04945 6.17084 6.25461 6.38302 6.56797 6.68387 6.72001 6.78079 6.80572 6.93672 7.02225 7.42488 7.46020 7.70422 7.76254 7.86616 8.19175 8.48716 9.25619 9.91203 10.48616 11.33299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.004621 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.533236 B = 6058.030872 C = 6777.329520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.095 0.905 4 N -0.681 5.681 5 C 0.103 3.897 6 C -0.151 4.151 7 C 0.149 3.851 8 N -0.591 5.591 9 C -0.255 4.255 10 H 0.065 0.935 11 C 0.004 3.996 12 N -0.896 5.896 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.172 3.828 18 C -0.119 4.119 19 C -0.105 4.105 20 H 0.113 0.887 21 C -0.145 4.145 22 C -0.153 4.153 23 H 0.125 0.875 24 C 0.522 3.478 25 O -0.506 6.506 26 O -0.518 6.518 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.334 0.666 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.015 0.985 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 -6.411 19.033 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.007 4.007 3 H 0.113 0.887 4 N -0.310 5.310 5 C -0.005 4.005 6 C -0.191 4.191 7 C 0.022 3.978 8 N -0.314 5.314 9 C -0.384 4.384 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.046 3.954 18 C -0.159 4.159 19 C -0.124 4.124 20 H 0.131 0.869 21 C -0.182 4.182 22 C -0.172 4.172 23 H 0.143 0.857 24 C 0.365 3.635 25 O -0.394 6.394 26 O -0.330 6.330 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.033 -5.982 19.194 20.131 hybrid contribution -0.175 -0.216 -1.357 1.385 sum -1.208 -6.199 17.837 18.922 Atomic orbital electron populations 1.22536 0.97176 1.01813 1.02390 1.21366 0.92212 0.98762 0.88376 0.88657 1.60714 1.62381 1.05772 1.02088 1.21425 0.96022 0.95177 0.87918 1.22610 0.97332 1.00600 0.98588 1.20812 0.89384 0.95465 0.92142 1.44090 1.06467 1.74405 1.06400 1.19175 1.20942 1.13101 0.85230 0.91763 1.24943 1.02226 0.94720 0.97574 1.70143 1.34149 1.09210 1.40437 0.86355 0.79152 0.78975 0.83117 1.20255 1.21847 1.21541 1.20738 0.92783 0.92415 0.89474 1.22134 0.95538 1.00842 0.97397 1.22480 0.91164 1.01447 0.97303 0.86865 1.23200 1.00497 0.98710 0.95834 1.21523 0.92581 1.02908 1.00233 0.85673 1.21783 0.78554 0.83320 0.79887 1.90689 1.70477 1.20865 1.57320 1.84410 1.38349 1.52132 1.58104 0.92400 0.91953 0.92770 0.84808 0.92483 0.92021 0.93560 0.96811 0.92950 0.93767 0.96685 0.90251 0.92915 0.93011 0.87518 0.87431 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.97 37.16 0.33 -1.62 16 2 C 0.10 1.27 1.61 -67.72 -0.11 1.16 16 3 H 0.10 1.43 6.23 -51.93 -0.32 1.11 16 4 N -0.68 -9.70 5.14 -99.70 -0.51 -10.21 16 5 C 0.10 1.81 1.94 -67.67 -0.13 1.68 16 6 C -0.15 -2.65 5.14 -26.61 -0.14 -2.78 16 7 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 8 N -0.59 -15.25 2.99 -172.32 -0.52 -15.76 16 9 C -0.25 -7.20 9.54 -15.06 -0.14 -7.34 16 10 H 0.06 1.79 7.93 -52.49 -0.42 1.37 16 11 C 0.00 0.13 4.73 -17.43 -0.08 0.04 16 12 N -0.90 -26.76 11.57 55.49 0.64 -26.12 16 13 Si 0.89 22.07 29.62 -169.99 -5.03 17.03 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C 0.17 4.29 5.36 -3.71 -0.02 4.27 16 18 C -0.12 -2.44 5.69 -26.61 -0.15 -2.60 16 19 C -0.11 -1.02 5.33 -90.59 -0.48 -1.51 16 20 H 0.11 0.90 8.13 -51.93 -0.42 0.48 16 21 C -0.14 -1.26 9.70 -26.70 -0.26 -1.52 16 22 C -0.15 -1.58 6.28 -91.78 -0.58 -2.15 16 23 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 24 C 0.52 6.98 6.93 36.01 0.25 7.23 16 25 O -0.51 -8.26 14.58 -18.75 -0.27 -8.54 16 26 O -0.52 -6.27 13.42 -39.24 -0.53 -6.80 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.33 4.46 8.08 -39.29 -0.32 4.14 16 31 H 0.06 1.08 7.09 -51.93 -0.37 0.71 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.70 7.22 -51.93 -0.38 0.32 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 2.20 6.19 -51.93 -0.32 1.88 16 39 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 1.08 7.78 -51.93 -0.40 0.67 16 43 H 0.41 3.82 9.10 45.56 0.41 4.23 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -32.24 339.78 -8.84 -41.08 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.20 Total: 6.13 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.53 Total: -1.93 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.39 Total: -52.09 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.80 Total: -15.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.24 -8.84 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds